BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71692.1 Length=1082 Score E Sequences producing significant alignments: (Bits) Value Ahg476289 jgi|Araly1|476289|fgenesh2_kg.2__1419__AT1G71692.1 1485 0.0 > Ahg476289 jgi|Araly1|476289|fgenesh2_kg.2__1419__AT1G71692.1 Length=897 Score = 1485 bits (804), Expect = 0.0 Identities = 868/898 (97%), Gaps = 7/898 (1%) Strand=Plus/Plus Query 185 AGAGATGGCTCGTGGAAAGATTCAGCTTAAGAGGATTGAGAACCCGGTTCACAGACAAGT 244 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 AGAGATGGCTCGTGGAAAGATTCAGCTCAAGAGGATTGAGAACCCGGTTCACAGACAAGT 60 Query 245 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 120 Query 305 TGATGCCGAGATCGGTGTTGTGATCTTCTCTCCTCAGGGCAAGCTCTTTGAGCTCGCTAC 364 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 TGACGCCGAGATCGGTGTTGTGATCTTCTCTCCACAGGGCAAGCTCTTTGAGCTCGCTAC 180 Query 365 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 240 Query 425 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTGATCCGAA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTAATCCGAA 300 Query 485 AGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 544 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 360 Query 545 GTTTGGAGGAGGAGATGGGGCTATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 604 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTTGGAGGAGGAGATGGGGCGATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 420 Query 605 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATGTTATGCTTCAAGAAATTCA 664 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 421 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATCTTATGCTTCAAGAAATTCA 480 Query 665 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 540 Query 725 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTCGCA---GTCATGGAGACAAACTA 781 |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 541 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTTGCAACAGTCATGGAGACTAACTA 600 Query 782 TTCCTATCCGCTAACAATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTGAA 841 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 601 TTCCTATCCGCTAACCATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTAAA 660 Query 842 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 720 Query 902 CATAATTAAAATAAAGCCTGTGGAACTTCGCTAGGCAGTTGAAAATCTATCCGTATGTTT 961 |||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| Sbjct 721 CATAATTAAAATAAAGCCTGTGGAACTTTGCTAGGCAGTTGAAATTCTATCTGTATGTTT 780 Query 962 TAT--CCTCTTGTTTTACATTTGTTGGTGTGAAGATGAAATGACTGCAAGTGTGGTGTGT 1019 | | ||||||||||| |||||||||||||||| ||||||||| | |||||||||||||| Sbjct 781 TTTTTCCTCTTGTTTTTCATTTGTTGGTGTGAACATGAAATGAGTACAAGTGTGGTGTGT 840 Query 1020 ACTTATAA-CTCTTTCTACTTTCTATCTATGTTTTGAATTTATGGATTATTTGGTTTT 1076 ||||| || |||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 841 ACTTA-AAGCTCTTTCTGGTTTATATCTATGGTTTGAATTTATGGATTATTTGGTTTT 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40295923269 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5