BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71692.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476289 jgi|Araly1|476289|fgenesh2_kg.2__1419__AT1G71692.1 1485 0.0
> Ahg476289 jgi|Araly1|476289|fgenesh2_kg.2__1419__AT1G71692.1
Length=897
Score = 1485 bits (804), Expect = 0.0
Identities = 868/898 (97%), Gaps = 7/898 (1%)
Strand=Plus/Plus
Query 185 AGAGATGGCTCGTGGAAAGATTCAGCTTAAGAGGATTGAGAACCCGGTTCACAGACAAGT 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGAGATGGCTCGTGGAAAGATTCAGCTCAAGAGGATTGAGAACCCGGTTCACAGACAAGT 60
Query 245 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 120
Query 305 TGATGCCGAGATCGGTGTTGTGATCTTCTCTCCTCAGGGCAAGCTCTTTGAGCTCGCTAC 364
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TGACGCCGAGATCGGTGTTGTGATCTTCTCTCCACAGGGCAAGCTCTTTGAGCTCGCTAC 180
Query 365 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 240
Query 425 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTGATCCGAA 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTAATCCGAA 300
Query 485 AGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 360
Query 545 GTTTGGAGGAGGAGATGGGGCTATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTGGAGGAGGAGATGGGGCGATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 420
Query 605 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATGTTATGCTTCAAGAAATTCA 664
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATCTTATGCTTCAAGAAATTCA 480
Query 665 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 540
Query 725 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTCGCA---GTCATGGAGACAAACTA 781
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 541 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTTGCAACAGTCATGGAGACTAACTA 600
Query 782 TTCCTATCCGCTAACAATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTGAA 841
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 TTCCTATCCGCTAACCATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTAAA 660
Query 842 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 720
Query 902 CATAATTAAAATAAAGCCTGTGGAACTTCGCTAGGCAGTTGAAAATCTATCCGTATGTTT 961
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 721 CATAATTAAAATAAAGCCTGTGGAACTTTGCTAGGCAGTTGAAATTCTATCTGTATGTTT 780
Query 962 TAT--CCTCTTGTTTTACATTTGTTGGTGTGAAGATGAAATGACTGCAAGTGTGGTGTGT 1019
| | ||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 781 TTTTTCCTCTTGTTTTTCATTTGTTGGTGTGAACATGAAATGAGTACAAGTGTGGTGTGT 840
Query 1020 ACTTATAA-CTCTTTCTACTTTCTATCTATGTTTTGAATTTATGGATTATTTGGTTTT 1076
||||| || |||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 841 ACTTA-AAGCTCTTTCTGGTTTATATCTATGGTTTGAATTTATGGATTATTTGGTTTT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5