BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71695.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926520 jgi|Araly1|926520|scaffold_202081.1 1738 0.0
> Ahg926520 jgi|Araly1|926520|scaffold_202081.1
Length=1123
Score = 1738 bits (941), Expect = 0.0
Identities = 1053/1107 (95%), Gaps = 7/1107 (1%)
Strand=Plus/Plus
Query 94 aaaaaaaacaaaaaaaaaTGACAAAGGCTTATTCAACACGTGTCCTCACGTTTCTGATAT 153
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 9 AAAAAAAAC--CAAAAAATGGCAAAGGCTTATTCAACACGTGTCCTCACGTTTCTGATGT 66
Query 154 TGATCTCGCTAATGGCGGTGACACTGAACCTTTT-TCCCACGGTAGAGGCAAAGAAGCGG 212
|||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||
Sbjct 67 TGATCTCGCTAATGGCGGTGACACTGAACCTTTTGT-CCACCGCAGAGGCAAAGAAGCGG 125
Query 213 AGTAGAGATGCTCCTATAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCG 272
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AGAAGAGATGTTCCTATAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCG 185
Query 273 AAAGTCGAAAACATCATCAGAAAAGAGCTCAAGAAAGTCTTCAAGCGAGATATTGGTTTA 332
|||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 186 AAAGTCGAAAACATTATCAAAAAAGAGCTCAAGAAAGTCTTCAAGAGAGACATTGGTTTA 245
Query 333 GCCGCTGCCATCCTTCGTATACATTTCCATGATTGCTTCGTTCAGGGATGTGAAGCATCA 392
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCCGCAGCCATCCTTCGTATACATTTCCATGATTGCTTCGTTCAGGGATGTGAAGCATCA 305
Query 393 GTGCTGCTAGCTGGATCAGCCAGTGGACCAGGAGAACAATCATCAATCCCAAATCTGACA 452
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 306 GTGCTGCTAGCTGGATCAGCCAGTGGACCAGGAGAACAATCATCAATCCCGAACCTGACA 365
Query 453 CTACGACAACAAGCCTTTGTCGTCATTAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGC 512
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 366 CTACGTCAACAAGCCTTTGTCGTCATCAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGT 425
Query 513 GGTCAAGTCGTCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA 572
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 426 GGTCAAGTCGTCTCTTGCTCCGATATCCTCGCTCTCGCCGCCCGCGACTCCGTCGTCCTA 485
Query 573 TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCGTTCGCGAGC 632
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 486 TCAGGAGGGCCAGACTATGCTGTGCCACTTGGCCGACGCGACTCTCTGGCGTTCGCGAGC 545
Query 633 CAGGAAACGACGTTAAATAACTTACCACCACCGTTCTTCAACGCGAGTCAGCTCATCGCC 692
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 546 CAGGAAACGACGTTAAATAACTTACCACCACCGTTCGCCAACGCGAGCCAGCTCATCGCC 605
Query 693 GACTTCGCCAACAGAAACCTCAACATCACCGACTTAGTAGCACTTTCCGGTGGTCACACC 752
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GACTTCGCCAGCAGAAACCTCAACATCACCGACTTAGTAGCACTTTCCGGTGGTCACACC 665
Query 753 ATCGGAATCGCGCATTGTCCGTCTTTCACAGACCGACTCTACCCGAACCAAGACCCAACC 812
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 666 ATCGGAATTGCGCATTGTCCATCTTTCACAGACCGGCTCTACCCGAACCAAGACCCAACC 725
Query 813 ATGAACCAGTTCTTCGCCAACAGCCTCAAACGCACTTGTCCCACCGCAAACTCGAGCAAC 872
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 726 ATGAACCAGTTCTTCGCCAACAGCCTCAAACGCACTTGTCCCACCGCGAACTCGAGCAAC 785
Query 873 ACGCAAGTGAATGACATAAGGAGTCCTGACGTGTTCGACAACAAGTACTACGTTGATCTC 932
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 786 ACGCAAGTGAATGACATAAGGAGTCCTGACGTGTTTGACAACAAGTACTATGTTGATCTC 845
Query 933 ATGAACCGACAAGGGCTATTCACTTCTGACCAGGATCTCTTCGTGGATAAGAGGACACGT 992
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 846 ATGAACCGACAAGGGCTGTTCACTTCTGACCAGGATCTGTTCGTGGACAAGAGGACACGT 905
Query 993 GGCATTGTGGAAAGCTTTGCGATCGACCAGCAGCTGTTTTTTGATTATTTTACTGTGGCG 1052
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| |||||
Sbjct 906 GGCATTGTGGAGAGCTTTGCGATCGACCAACAGCTGTTTTTCGATCATTTTACGGTGGCC 965
Query 1053 ATGATCAAGATGGGTCAGATGAGTGTCTTAACTGGAACACAAGGAGAGATTCGTTCCAAT 1112
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 966 ATGATCAAGATGGGTCAGATGAGTGTCTTGACGGGGACACAAGGAGAGATTCGTTCCAAC 1025
Query 1113 TGTTCAGCCAGAAACACCCAAAGTTTCATGTCCGTTTTGGAAGAAGGCATAGAGGAAGCT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TGTTCAGCCAGAAACACCCAAAGTTTCATGTCCGTTTTGGAAGAAGGCATAGAGGAAGCT 1085
Query 1173 ATT-T--CCATGATCTAAATAACCATA 1196
|| | ||||||||||||||||||||
Sbjct 1086 GTTGTTTCCATGATCTAAATAACCATA 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5