BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71696.2
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908764 jgi|Araly1|908764|Al_scaffold_0002_1845 2338 0.0
> Ahg908764 jgi|Araly1|908764|Al_scaffold_0002_1845
Length=1476
Score = 2338 bits (1266), Expect = 0.0
Identities = 1410/1480 (95%), Gaps = 8/1480 (1%)
Strand=Plus/Plus
Query 110 ATGAGCAAGCTCAGATTCT-TCCAA-AGTCTCCTAATTTCGACTGTGATCTGCTTTTTCC 167
||||||||||| ||||| | | ||| ||||||||||||||||| | ||||||||||||||
Sbjct 1 ATGAGCAAGCTTAGATT-TGT-CAATAGTCTCCTAATTTCGACGGCGATCTGCTTTTTCC 58
Query 168 TCCCGTCGATCAACGCTAGAGGCGGCCACTCCGACCATATCCACCCAGGTGATGGGAATT 227
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 59 TTCCGTCGATCGCCGCTAGAGGTGGCCACTCCGACTATATCCACCCAGGTGATGGGAATT 118
Query 228 ATAGTTTTCATGGTATTGTGAGGCACTTATTTGCTCAAGAAGAGCCTAC-ACCGAGTTTG 286
|||||||||||||| || |||| || ||||||||||||||||| || | ||||||||||
Sbjct 119 CTAGTTTTCATGGTACTGCGAGGAACCTATTTGCTCAAGAAGAGACT-CGACCGAGTTTG 177
Query 287 GAATTAACTCGAGGATATATGACTAATGATGATCTTGAGAAAGCAATGAAGGATTTCACC 346
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAATTAACTCGAGGTTATATGACTAATGATGATCTTGAGAAAGCAATGAAGGATTTCACC 237
Query 347 AAGAGATGTAGTAAGATTTCGAGATTATACAGCATCGGAAAGAGTGTCAATGGATTTCCT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGAGATGTAGTAAGATTTCGAGATTATACAGCATCGGAAAGAGTGTCAATGGATTTCCT 297
Query 407 TTGTGGGTCATAGAGATTTCAGACAGGCCTGGAGAGATAGAGGCTGAACCTGCATTCAAG 466
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 TTGTGGGTCATAGAGATTTCAGACAGGCCTGGAGAGATAGAGGCTAAACCTGCATTCAAG 357
Query 467 TACATTGGGAATGTACATGGAGATGAACCTGTAGGGCGTGAGCTCTTATTACGCCTTGCA 526
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 358 TACATTGGGAATGTACATGGAGATGAACCTGTCGGGCGTGAGCTCTTATTACGTCTTGCT 417
Query 527 AACTGGATTTGTGATAACTATAAGAAGGATCCATTGGCCCAGATGATTGTAGAAAATGTT 586
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 418 AACTGGATTTGTGATAACTATAAGAAGGATCCGTTGGCTCAGATGATTGTAGAAAATGTT 477
Query 587 CACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAAT 646
|||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 478 CACCTTCACATAATGCCATCATTGAATCCAGATGGCTTTTCAACCAGGAAACGTAATAAT 537
Query 647 GCAAATAATGTGGATCTAAATCGCGACTTCCCTGATCAGTTCTT-TCCTTTCAATGACGA 705
||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||
Sbjct 538 GCAAACAATGTGGATCTAAATCGCGACTTCCCTGACCAGTTCTTCTCCTTT-AATGAAGA 596
Query 706 CTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATT 765
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 CTTGAGTTTGAGGCAACCGGAAACTAGGGCAATTATGACTTGGCTGAGAGATATACGATT 656
Query 766 CACAGCGTCGGCTACTCTGCACGGGGGTGCGCTGGTCGCAAATTTTCCATGGGATGGTAC 825
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CACAGCTTCGGCTACTCTGCACGGGGGTGCGCTGGTCGCAAATTTTCCATGGGATGGTAC 716
Query 826 AGAGGATAAAAGGAAATACTATTATGCATGTCCTGACGATGAGACATTCCGGTTCTTGGC 885
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 AGATGATAAGAGGAAATACTATTATGCATGTCCTGATGATGAGACATTCCGGTTCTTGGC 776
Query 886 ACGTATATATAGCAAATCTCACCGTAATATGTCTTTGAGCAAAGAATTTGAGGAAGGAAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACGTATATATAGCAAATCTCACCGTAATATGTCTTTGAGCAAAGAATTTGAGGAAGGAAT 836
Query 946 CACCAATGGAGCATCCTGGTACCCAATTTATGGTGGCATGCAAGACTGGAATTACATATA 1005
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 CACAAATGGAGCATCCTGGTACCCAATTTATGGTGGCATGCAAGACTGGAATTACATACA 896
Query 1006 TGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGA 1065
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 TGGAGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAGAGCCTCAGA 956
Query 1066 GCTTTCCACCATTTGGGATTATAATAGAAAGAGCATGCTGAATCTTGTTGCAAGCTTAGT 1125
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 957 GCTTCCCACCATTTGGGATTACAATAGAAAGAGCATGCTGAATCTTGTTGCAAGCCTAGT 1016
Query 1126 GAAGACAGGAGTTCATGGGCGGATCTTTTCATTAGACAAGGGAAAGCCACTGCCTGGGCT 1185
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1017 GAAGACAGGAGTTCATGGGAGGATCTTTTCATTAGACCAGGGAAAGCCACTGCCTGGCCT 1076
Query 1186 TGTTGTGGTCAAGGGAATTAATTATACGGTTAAAGCTCATCAAACATATGCAGACTATCA 1245
||| |||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1077 TGTCGTGGTCAATGGAATTAACTATACGGTTAAAGCTCATCAAACGTACGCAGACTATCA 1136
Query 1246 TCGGTTGCTTGTACCTGGACAGAAATATGAAGTCACAGCATCATCCCCAGGATACAAATC 1305
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCGGTTGCTTGCACCTGGACAGAAATATGAAGTCACAGCATCATCCCCAGGATACAAATC 1196
Query 1306 GAAAACAACAACTGTTTGGTTAGGTGAAAACGCTGTTACCGCTGATTTCATTCTCATCCC 1365
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1197 GAAAACAACAACTGTTTGGTTAGGTGACAACGCTGTTAGCGCTGATTTCATTCTCATCCC 1256
Query 1366 AGAAACAAGTTCCCGAGGCAATCAACTGAGAAGCAGCTGCGACTGTAGCTGTAAAAGCTG 1425
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAAACAAGTTCCCGAGGCAATCTACTGAGAAGCAGCTGCGACTGTAGCTGTAAAAGCTG 1316
Query 1426 CGGTCAGCCGCTTCTAACGCAATTTTTCACAGAGACAAATAATGGAATCACGCTTACCCT 1485
||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1317 CGGTCAGCCACTTCTAACGCAGTTTTTCACAGAGACAAATAATGGAATCACAATCACCCT 1376
Query 1486 ATTCGTGGTTGTAGTGTTCCTTTGTTTTTTGTTGCAAAGAAGGGTGAGATTCAACCTATG 1545
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1377 TTTCGTGGTTGTAGTGTTCCTGTGTTTTTTGTTGCAAAGAAGGGTGAGGTTTAACCTATG 1436
Query 1546 GAAGCAAAGACAATCCTCTAGAAGATCAATAACAGTATGA 1585
||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GAAGCAAAGACAATCCTCTAGAAGATCAATAACAGTATGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5