BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71697.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926523 jgi|Araly1|926523|scaffold_202084.1 1700 0.0
> Ahg926523 jgi|Araly1|926523|scaffold_202084.1
Length=1085
Score = 1700 bits (920), Expect = 0.0
Identities = 999/1038 (96%), Gaps = 2/1038 (0%)
Strand=Plus/Plus
Query 309 aaaaaaaTGGCGATCAAGACAAAGACTAGTCTAATTCCAAGTTGTTCATCACCTGAGGAT 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 16 AAAAAAATGGCGATCAAGACAAAGACTAGTCTGATTCCAAGTTGTTCATCACCGGAGGAT 75
Query 369 CTAAAACGCGTTTTGCAAACGCTAGGTTCGAGCTGGGGAGATGTAGTTGAAGATCTGGAG 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CTAAAACGCGTTTTGCAAACGCTAGGTTCGAGCTGGGGAGATGTAGTTGAAGATCTGGAA 135
Query 429 CGTCTTGAGGTTGTTCCGTTAAAAGGAGCTATGACTAACGAGGTTTATCAGATTAATTGG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGTCTTGAGGTTGTTCCGTTAAAAGGAGCTATGACTAACGAGGTTTATCAGATTAATTGG 195
Query 489 CCTACTTTAAACGGTGAAGATGTTCATCGGAAAGTTCTTGTTCGGATCTACGGTGACGGC 548
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 196 CCTACTTTAAACGGCGAAGATGTTCACCGGAAAGTTCTTGTTCGGATCTACGGTGACGGC 255
Query 549 GTTGACCTTTTCTTTAACAGAGGTGATGAAATCAAAACGTTTGAGTGTATGTCTCATCAT 608
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 256 GTTGACCTTTTCTTTAACAGAGATGATGAAATCAAAACCTTTGAGTGTATGTCTCATCAT 315
Query 609 GGTTATGGTCCTAAGCTTCTTGGTCGTTTCTCTGATGGTCGTCTTGAAGAATTCATACAC 668
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 316 GGTTATGGTCCTAAGCTTCTTGGTCGCTTCTCTGATGGTCGTCTTGAAGAATTTATCCAC 375
Query 669 GCCAGAACTCTTTCTGCAGATGATCTTCGTGTAGCAGAAACATCTGATTTCATCGCTGCG 728
|| ||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||
Sbjct 376 GCAAGAACTCTTTCTGCAGATGATCTTCGTATCGTAGAAACATCTGATTTCATTGCTGCG 435
Query 729 AAGCTAAGAGAGTTTCATAAGCTTGATATGCCTGGTCCAAAGAACGTTCTTCTCTGGGAA 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AAACTAAGAGAGTTTCATAAGCTTGATATGCCTGGTCCAAAGAACGTTCTTCTCTGGGAA 495
Query 789 AGACTTAGGACTTGGCTTAAGGAGGCTAAGAACTTGGCTTCACCTATAGAGATGGATAAG 848
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 496 AGACTCAGGACTTGGCTTAAGGAGGCTAAGAACTTGGCTTCACCAATAGAGATGGATGAG 555
Query 849 TATCGGTTGGAAGGTT-TGGAAAATGAAATCAATTTGTTGGAAGAGAGACTTACTCGGGA 907
|||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 556 TATCGGTTGG-ATGTTATGGAAGATGAAATCAATTTGTTGGAAGAGAGACTTACTAGGGA 614
Query 908 TGATCAAGAGATTGGTTTCTGTCACAACGATCTTCAGTATGGAAATGTCATGATTGATGA 967
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 615 TGATCAAGAGATTGGTTTCTGTCACAACGATCTTCAGTACGGAAATGTCATGATTGATGA 674
Query 968 AGTAACCAATGCCATTACCATCATAGACTATGAGTATTCGAGTTTCAACCCAATTGCTTA 1027
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGAAACCAACGCCATTACCATCATAGACTATGAGTATTCGAGTTTCAACCCAATTGCTTA 734
Query 1028 TGACATTGCAAACCACTTTTGTGAGATGGCTGCTAATTACCATTCAGACACTCCTCATGT 1087
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 735 TGACATTGCAAACCACTTCTGTGAAATGGCTGCTAATTACCATTCAGACACTCCTCATGT 794
Query 1088 TCTGGACTACACTCTATATCCAGGAGAAGGAGAAAGGAGAAGGTTCATTAGCACATATCT 1147
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 795 TCTGGATTACACTCTATATCCAGGAGAAGAAGAAAGGAGAAGGTTCATTAGAACATATCT 854
Query 1148 TGGCTCTACAGGGAATGCAACAAGTGATAAAGAAGTAGAGAGGTTATTGAAAGATGCAGA 1207
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 855 TGGCTCTACAGGGAATGCAACAAGTGAGGGAGAAATAGAGAGGTTATTGACTGATGCAGA 914
Query 1208 GAGCTACACTTTAGCAAACCATATCTTCTGGGGACTATGGGGAATCATCTCGGGACATGT 1267
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 915 GAGCTACACTTTAGCAAACCATATCTTCTGGGGATTATGGGGAATCATCTCGGGACATGT 974
Query 1268 GAACAAGATTGAGTTCGATTACATGGAATATGCAAGGCAGAGATTTGAACAGTACTGGCT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GAACAAGATTGAGTTCGATTACATGGAATATGCAAGGCAGAGATTTGAACAGTACTGGCT 1034
Query 1328 TAGAAAGCCTTTGCTTCT 1345
||||||||||||||||||
Sbjct 1035 TAGAAAGCCTTTGCTTCT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5