BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71710.1
Length=2281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316139 jgi|Araly1|316139|fgenesh1_pm.C_scaffold_2001172 3175 0.0
> Ahg316139 jgi|Araly1|316139|fgenesh1_pm.C_scaffold_2001172
Length=1995
Score = 3175 bits (1719), Expect = 0.0
Identities = 1909/2001 (95%), Gaps = 12/2001 (1%)
Strand=Plus/Plus
Query 58 ATGTCTCCAGTTGAACCCGCCGGTATAATGAAGAAATCTCATCGTCAGAAATCTCAGAGA 117
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGTCTCCAGTTGAACCCGCCGGGATAATGAAGAAAACCCATCGTCAGAAATCTCAGAGA 60
Query 118 TTATGGGCAAAGCTAGTGATGAGAAAGTGGTTGAACATAAGTGGTAGAGATCCTGAGTAT 177
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATGGGCAAAGCTAGTAATGAGAAAGTGGTTGAACATAAGTGGTAGAGATCCTGAGTAT 120
Query 178 GGTGCTGATACTGATA-ACGAATCCGAAAACGAAGATGCTCGTGAAGACAACGATGACTC 236
|||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGTGCTGATACTGA-AGATGAATCCGAAAACGAAGATGTTCGTGAAGACAACGATGACTC 179
Query 237 TAGCTCCGATGAAGAAG-GTGGTAGTGGCTCGAGAGGAAGAGAATCAAAAGTTTATGAGA 295
||| ||||||||||||| | | | |||| |||||||||||||||||||||| |||||
Sbjct 180 TAGTTCCGATGAAGAAGAAT-CTTCTAGCTCAAGAGGAAGAGAATCAAAAGTTTGTGAGA 238
Query 296 ACGCGGAGGACGCAATCGCAGCCGCTTCAGCCGTTGTAGACGCAGCAGCAGCAGCGGCGG 355
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 239 ACGCGGAGGATGCAATCGCAGCCGCTTCCGCCGTTGTAGACGCAGCAGCAGCTGCGGCGG 298
Query 356 AGTTTATTAGCAATGATGCTCCAATGAAGTTAAGAAGAAGGAATTCAGAAACATTAAGAG 415
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 AGTTTATTAGCAATGAAGCTCCAATGAAGTTACGAAGAAGGAATTCAGAAACATTAAGAG 358
Query 416 CACAGTACATTAACAACAAAGAAATAAGAGTTTGTGTTGGTACGTGGAACGTTGGAGGAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CACAGTACATTAACAACAAAGAAATAAGAGTTTGTGTTGGTACGTGGAACGTTGGAGGAA 418
Query 476 TCTCACCACCATCTGATCTTGACATTGACGACTGGATTGAAATTAACCAACCAGCTGATA 535
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 419 TCTCACCACCATCTGATCTTGACATCGATGACTGGATTGAAATTAATCAACCAGCTGATA 478
Query 536 TCTACGTTCTTGGGTTACAAGAGATTGTTCCTTTAAATGCTGGAAACATTCTTGGAGCTG 595
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 479 TCTACGTTCTTGGTTTACAAGAGATTGTTCCGTTAAATGCTGGAAACATTCTTGGAGCGG 538
Query 596 AAGATGATCGTCCTGTTGCTAAATGGGAAGAAGTGATTAGAGAAGCATTGAACAGAGTTA 655
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGATAATCGTCCGGTTGCGAAATGGGAAGAAGTGATTAGAGAAGCATTGAACAGAGTTA 598
Query 656 GACCAAAACTCTCCGGGGTTAAGAGTTATAGTGATCCACCATCTCCGGGTAGGTTTAAAC 715
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 599 GACCAAAACTCTCTGGGGTTAAGAGTTATAGTGATCCACCATCTCCTGGTAGATTTAAAC 658
Query 716 CTTTTGAGGAAACACATGATATTATAGAGGAAGAAGTAGCTTTTGAGAGTGATAGTGATG 775
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTTTGAGGAAACACATGATGTTATAGAGGAAGAAGTAGCTTTTGAGAGTGATAGTGATG 718
Query 776 CTGGTGTTGAGATTCATCCGATTGACGAGGAGGAAGAAGAGGAAACCGATAGACTTTGGG 835
||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || ||||
Sbjct 719 CTGGTGTTGAGGTTCATCCGATTAACGAGGAAGAAGAAGAAGAAACCGATAGGCTCTGGG 778
Query 836 CG-TTAAAACATGACGGTGGAGTTATCGGCGAAGTTAAGACTCTTGTTGACCCGAATACC 894
|| ||||| |||||||||||||||||||| |||||| | ||||||||| |||||||||||
Sbjct 779 CGCTTAAA-CATGACGGTGGAGTTATCGGTGAAGTTCACACTCTTGTTAACCCGAATACC 837
Query 895 GGTTTGCCGGTTGTTGAGATCAAGAGACAGTTTTCGATTCCTAAGAAGCTAGACAGACAA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGTTTGCCGGTTGTTGAGATCAAGAGACAGTTTTCGATTCCTAAGAAGCTAGACAGACAA 897
Query 955 CTTTGTTTACGTGCTGATAGCTTTA-AGGGGA-TAAGCGACGATGATTCTACTCAAACCG 1012
||||||||||||||||||| |||| |||||| || ||| || ||||||| ||||||||
Sbjct 898 CTTTGTTTACGTGCTGATA-CTTTTGAGGGGAATAT-CGAAGAGGATTCTAGTCAAACCG 955
Query 1013 GTATGAAAACGATAAACCGGATGTTAAGCGGGAAAGAACGGATCGGTTTGAGTTGGCCTG 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 GTATGAAAACGATAAACCGGATGTTAAGCGGGAAAGAACGGATCGGTTTGAGCTGGCCTG 1015
Query 1073 AGCCACCATTGAACATGTTAGGACCTTGTGTTCTCGATAGACAGCCGTCGATAAAGACAG 1132
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 AGCCACCATTGAACATGTTAGGACCTTGCGTTCTCGATAGACAGCCGTCGATAAAGACAG 1075
Query 1133 TGAAGTCTTTAAAAACAGCCAAGTCTTTCAAGGCTTATAGTTCGTTTAAGTCTGTAGCCG 1192
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1076 TGAAGTCTTTAAAAACAGCAAAGTCTTTCAAGGCTTTTAGTTCGTTTAAGTCTGTAGCCG 1135
Query 1193 GAAACAACAACGGGATTCCCCCTGAGGTTTTAGCTCTAGCGGAAATGGACCTGAAGTTGC 1252
||| ||||||||||||||| || ||||| || |||||||||||||||||| || ||||||
Sbjct 1136 GAAGCAACAACGGGATTCCGCCGGAGGTATTGGCTCTAGCGGAAATGGACTTGCAGTTGC 1195
Query 1253 TAATGGAGAGGAAACGAAGACCGGCTTATGTGAGGCTAGTGAGTAAACAAATGGTTGGGA 1312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1196 TAATGGAGAGGAAACGAAGACCGGCTTATGTGAGGCTTGTGAGTAAACAAATGGTTGGGA 1255
Query 1313 TTCTTTTGACCATTTGGGTTAAACGAAG-CTTGCGGAAACATATTCAAAACGTACGAGTC 1371
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1256 TTCTTTTGACCATTTGGGTTAAACGAAGTCT-GCGAAAACATATTCAAAACGTACGAGTG 1314
Query 1372 TCTACTGTTGGTGTTGGCGTTATGGGATATATTGGTAACAAGGGAGCTGTGTCTGTGAGC 1431
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1315 TCTACTGTTGGAGTTGGCGTCATGGGATATATTGGTAACAAGGGAGCTGTATCTGTGAGC 1374
Query 1432 ATGTCGATAAACCAGACGTTCTTTTGTTTCATAAACACGCATTTAACGGCAGGAGAAAGA 1491
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1375 ATGTCGATAAACCAGACGTTCTTTTGTTTCATAAACACGCATTTAACGGCTGGAGAAAGA 1434
Query 1492 GAGGTTGATCAGATAAAGAGGAATGCTGATGTACACGAGATACATAAAAGAACAGTCTTT 1551
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GAGGTTGATCAGATCAAGAGGAATGCTGATGTACACGAGATACATAAAAGAACAGTCTTT 1494
Query 1552 CACTCTGTCTCAGCTCTTGGACTTCCCAAGCTTATCTATGATCACGAAAGAATAATCTGG 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CACTCTGTCTCAGCTCTTGGACTTCCCAAGCTTATCTATGATCACGAAAGAATAATCTGG 1554
Query 1612 CTAGGTGATCTCAACTATCGGCTTAGTTCATCGTATGAGAAAACCAGAGACCTCATTTCC 1671
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1555 TTAGGAGATCTCAACTATCGGCTTAATTCATCGTATGAGAAAACCAGAGACCTCATTTCC 1614
Query 1672 AAGAGAGAATGGTCTAAATTACTTGAATATGACCAGCTGGTAAAGGAATACAGAAAAGGT 1731
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAGAGAGAATGGTCCAAGTTACTAGAATATGACCAGCTGGTAAAGGAATACAGAAAAGGT 1674
Query 1732 AGAGCATTTGATGGATGGTCAGAAGGAACTCTACATTTTCCACCAACTTATAAGTACCAA 1791
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AGAGCATTTGACGGATGGTCAGAAGGAACTCTACATTTTCCACCAACTTATAAGTACCAA 1734
Query 1792 GCGAATTCCGATGAGTACACCGCAAACGATGGAAAGGCGCCGAAAAGAACACCAGCTTGG 1851
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1735 GCGAATTCCGATGAGTACACCGCAAACGATGGAAAGGCCCCGAAAAGAACACCAGCTTGG 1794
Query 1852 TGTGACAGAGTACTATCCTACGGGAAAGGAATGAGGTTGGTTCATTACAGGAGAACCGAA 1911
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1795 TGTGACAGAGTACTATCCTACGGGAAAGGAATGAGGTTGGTTCATTACAGGCGAACCGAA 1854
Query 1912 CAGAAATTCTCAGATCATCGTCCGGTTACAGCGATATACATGGCTGAAGTCGAAGTGTTT 1971
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1855 CAGAAATTCTCAGATCATCGTCCGGTCACAGCGATATACATGGCTGAAGTCGAAGTGTTT 1914
Query 1972 TCTGCGAGGAAACTTCAGCGAGCGTTGACATTTACGGATGCAGAGATTGAAGACGAGGGA 2031
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1915 TCTGCTAGGAAGCTTCAGCGAGCGTTGACATTCACGGATGCAGAGATTGAAGACGAGGGA 1974
Query 2032 CTTGTAGCCGTTCTCGTTTAA 2052
||||| |||||||||||||||
Sbjct 1975 CTTGTTGCCGTTCTCGTTTAA 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893502475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5