BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71730.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476296 jgi|Araly1|476296|fgenesh2_kg.2__1426__AT1G71730.1 745 0.0
> Ahg476296 jgi|Araly1|476296|fgenesh2_kg.2__1426__AT1G71730.1
Length=749
Score = 745 bits (403), Expect = 0.0
Identities = 674/793 (85%), Gaps = 65/793 (8%)
Strand=Plus/Plus
Query 79 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATCTGTTCACCAGAAAGTCTCTCCGAATC 138
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATTTGTTCACCAGAAAGTCTCTCCGAATC 60
Query 139 CCACAGAATCTAAGCATTACCGCTTCCCCG--T-T-AT----T-GATT-GGAGATGTCTC 188
| ||||| || ||||||||| |||| || | | || | |||| | | |||||||
Sbjct 61 CGACAGATTCCAAGCATTACATCTTCTACGATTCTCATAAACTCGATTAGCA-ATGTCTC 119
Query 189 CGGTCAAATCAAACCTTCATCAACGTCTCACTATTCGAAATCTAGTCTCTCAGAAGCGTC 248
||| ||| | || | | || || ||||||||||| |||||||| |||
Sbjct 120 TGGT--AAT-----C-TC-GGATC-TC-CA-TATTCGAAATCCAGTCTCTCCGAA----- 162
Query 249 ATCATCATCATCTAGCTCACTAATTTTCCAGATCCCAAACAACGCTTCATTCTTCCTGGA 308
| |||||||| |||||||||||| | || |||||| | |||| | ||||| |||
Sbjct 163 A-CATCATCAGCTAGCTCACTAACCTCCCGGATCCC--A-AACG---C---CTTCCAGGA 212
Query 309 AAATCAGAGGAGATACAGCACCGGCTCCAGCAGCGGTTCACC-GCCAGATGTAAACAAGG 367
|||||||| |||||| |||||| ||| |||||||| ||||| | ||||||||||||||
Sbjct 213 GAATCAGAGAAGATACGGCACCGACTCTAGCAGCGGCTCACCTG-TAGATGTAAACAAGG 271
Query 368 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 331
Query 428 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCGGAGTGCGCGAGAGACGCCGTGGCAG 487
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 332 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCAGAGTGCGCTAGAGCCGCCGTGGCAG 391
Query 488 AGGTTTTGGAGATGTTTC-AAGGTTTGCTCGGGAAAGTAACAGAGAAGGAGAAAGCTTCT 546
|||||||||||||||| | |||||||||| ||||||||||||||||| |||||||| |||
Sbjct 392 AGGTTTTGGAGATGTT-CGAAGGTTTGCTTGGGAAAGTAACAGAGAAAGAGAAAGCGTCT 450
Query 547 CTGCAACGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTGAACAGCTGAAC 606
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 451 CTGCAGCGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTCAACAGCTGAAC 510
Query 607 GAATGATCGAT---T-GCTGATTTT-GATTCCGTGGAGAAACGAAGAGGTTAGCAGAAAT 661
||||||||||| | | | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 511 GAATGATCGATCAATTGATCATTTTTGATTCTGTGGAGAAACGAAGAGGTTAGCAGAAAT 570
Query 662 TTTCCTCTTCTTCACCGAGCCATTGTTGTTAGCTGATTATCATCTGTGTGTGCCTT-AAT 720
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 571 TTTCCTCTTCTTCACTGAGCCATTGTTCTTAGCTGATTATCATCTGTGTGTGC-TTCAAT 629
Query 721 AAATCTACTCCATTTAGGTCAAATTCAGAGCATTTGCAATGCTTGTGAGTTGTGACTGTA 780
|||| | | || | ||||||||| | || ||||||||||| | |||||||| |
Sbjct 630 AAATTT--T--AT---G-TCAAATTCAAAACAATTGCAATGCTTAAGCCTTGTGACTACA 681
Query 781 C--TCTTTTGATTACAGGAAAAGAAAACTTGAAAC-AGTTTATTATAAGTTTCTATTGCA 837
| ||||||||||| ||||||| ||| |||||||| | |||||||| ||| ||||| ||
Sbjct 682 CACTCTTTTGATTAGAGGAAAA-AAA-CTTGAAACGA-TTTATTAT--GTTACTATTTCA 736
Query 838 GTGAGCTTCGTTG 850
|||||||||||||
Sbjct 737 GTGAGCTTCGTTG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5