BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71730.1 Length=850 Score E Sequences producing significant alignments: (Bits) Value Ahg476296 jgi|Araly1|476296|fgenesh2_kg.2__1426__AT1G71730.1 745 0.0 > Ahg476296 jgi|Araly1|476296|fgenesh2_kg.2__1426__AT1G71730.1 Length=749 Score = 745 bits (403), Expect = 0.0 Identities = 674/793 (85%), Gaps = 65/793 (8%) Strand=Plus/Plus Query 79 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATCTGTTCACCAGAAAGTCTCTCCGAATC 138 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATTTGTTCACCAGAAAGTCTCTCCGAATC 60 Query 139 CCACAGAATCTAAGCATTACCGCTTCCCCG--T-T-AT----T-GATT-GGAGATGTCTC 188 | ||||| || ||||||||| |||| || | | || | |||| | | ||||||| Sbjct 61 CGACAGATTCCAAGCATTACATCTTCTACGATTCTCATAAACTCGATTAGCA-ATGTCTC 119 Query 189 CGGTCAAATCAAACCTTCATCAACGTCTCACTATTCGAAATCTAGTCTCTCAGAAGCGTC 248 ||| ||| | || | | || || ||||||||||| |||||||| ||| Sbjct 120 TGGT--AAT-----C-TC-GGATC-TC-CA-TATTCGAAATCCAGTCTCTCCGAA----- 162 Query 249 ATCATCATCATCTAGCTCACTAATTTTCCAGATCCCAAACAACGCTTCATTCTTCCTGGA 308 | |||||||| |||||||||||| | || |||||| | |||| | ||||| ||| Sbjct 163 A-CATCATCAGCTAGCTCACTAACCTCCCGGATCCC--A-AACG---C---CTTCCAGGA 212 Query 309 AAATCAGAGGAGATACAGCACCGGCTCCAGCAGCGGTTCACC-GCCAGATGTAAACAAGG 367 |||||||| |||||| |||||| ||| |||||||| ||||| | |||||||||||||| Sbjct 213 GAATCAGAGAAGATACGGCACCGACTCTAGCAGCGGCTCACCTG-TAGATGTAAACAAGG 271 Query 368 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 331 Query 428 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCGGAGTGCGCGAGAGACGCCGTGGCAG 487 |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| Sbjct 332 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCAGAGTGCGCTAGAGCCGCCGTGGCAG 391 Query 488 AGGTTTTGGAGATGTTTC-AAGGTTTGCTCGGGAAAGTAACAGAGAAGGAGAAAGCTTCT 546 |||||||||||||||| | |||||||||| ||||||||||||||||| |||||||| ||| Sbjct 392 AGGTTTTGGAGATGTT-CGAAGGTTTGCTTGGGAAAGTAACAGAGAAAGAGAAAGCGTCT 450 Query 547 CTGCAACGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTGAACAGCTGAAC 606 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 451 CTGCAGCGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTCAACAGCTGAAC 510 Query 607 GAATGATCGAT---T-GCTGATTTT-GATTCCGTGGAGAAACGAAGAGGTTAGCAGAAAT 661 ||||||||||| | | | ||||| ||||| |||||||||||||||||||||||||||| Sbjct 511 GAATGATCGATCAATTGATCATTTTTGATTCTGTGGAGAAACGAAGAGGTTAGCAGAAAT 570 Query 662 TTTCCTCTTCTTCACCGAGCCATTGTTGTTAGCTGATTATCATCTGTGTGTGCCTT-AAT 720 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||| Sbjct 571 TTTCCTCTTCTTCACTGAGCCATTGTTCTTAGCTGATTATCATCTGTGTGTGC-TTCAAT 629 Query 721 AAATCTACTCCATTTAGGTCAAATTCAGAGCATTTGCAATGCTTGTGAGTTGTGACTGTA 780 |||| | | || | ||||||||| | || ||||||||||| | |||||||| | Sbjct 630 AAATTT--T--AT---G-TCAAATTCAAAACAATTGCAATGCTTAAGCCTTGTGACTACA 681 Query 781 C--TCTTTTGATTACAGGAAAAGAAAACTTGAAAC-AGTTTATTATAAGTTTCTATTGCA 837 | ||||||||||| ||||||| ||| |||||||| | |||||||| ||| ||||| || Sbjct 682 CACTCTTTTGATTAGAGGAAAA-AAA-CTTGAAACGA-TTTATTAT--GTTACTATTTCA 736 Query 838 GTGAGCTTCGTTG 850 ||||||||||||| Sbjct 737 GTGAGCTTCGTTG 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31451406525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5