BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71740.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926527 jgi|Araly1|926527|scaffold_202088.1                        597    2e-170


> Ahg926527 jgi|Araly1|926527|scaffold_202088.1
Length=436

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 371/394 (94%), Gaps = 3/394 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTCAGACCGTTCCACCATCTCGAACGAAGCCGCTTACAATTTTCAAGATGGGTTTA  60
            ||||||||| ||| |||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct  21   ATGGCTCAGTCCGCTCCATCATCTCGAACGAAGCGGCTTACAGTTTTCAAGATGGGTTTA  80

Query  61   GCCTCTGCAAGCGTCCGATTGGTTAACCTTGCTTCTCATTCGAAGAGGAAGCTTCGTCGT  120
            ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||
Sbjct  81   GCCTCTGCAAGCGTCCGTTTGGTTAGCCTCGCTTCTCATTCGAAGAGGAAGCTTTGTCGT  140

Query  121  TGGGCTGCCTGTTATGGCTCTAGAGATTATGAACCTGTTATATATCTCCAAAACGACATG  180
            |||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct  141  TGGGTTACCTGTTATGGCTCTAGAGATTATGAACCTGTTATACATCTCCAAAATGACACG  200

Query  181  ACGATGATGAACAATGGTGGTGTTTATGA---ATACAACGGAGACCCGAGCATGTTGCTG  237
            ||||||||||||||||||| |||||||||   ||||||||| ||||||||||||||||| 
Sbjct  201  ACGATGATGAACAATGGTGATGTTTATGATCCATACAACGGGGACCCGAGCATGTTGCTT  260

Query  238  AGTGGGGATCAGAGACGAGGTCCGTTGTGGCAGAAGAACATTCTCATGGGAGGAAAATGC  297
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  261  AGTGGGGATCAGAGACGAGGTCCGCTGTGGCAGAAGAACATTCTCATGGGAGGAAAATGC  320

Query  298  CAGCTTCCAGATTTCTCAGGTGTTATATTGTATGATGCTGATGGACAAGTTGTTCCTCCG  357
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  321  CAGCTTCCAGACTTCTCAGGTGTTATATTGTATGATGCTGATGGAAAAGTTGTTCCTCCG  380

Query  358  GCCAAGAACTCTCTTCCTTTGCTCACCTGGAAGT  391
            ||||||||||||||||||||||||||||||||||
Sbjct  381  GCCAAGAACTCTCTTCCTTTGCTCACCTGGAAGT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5