BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71760.2
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316144 jgi|Araly1|316144|fgenesh1_pm.C_scaffold_2001177 597 4e-170
> Ahg316144 jgi|Araly1|316144|fgenesh1_pm.C_scaffold_2001177
Length=771
Score = 597 bits (323), Expect = 4e-170
Identities = 462/526 (88%), Gaps = 22/526 (4%)
Strand=Plus/Plus
Query 65 ATGGCGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGGTGAAG 124
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 ATGGCGAGTACTCTCTTTATCGCTCTCCAATGTTACGAATGTTCGACTATGCAGGTGAAG 60
Query 125 CAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTG 184
|||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |||
Sbjct 61 CAGAAGAAGAAAAGCAGTAACAAATGGGTTTGTGTGATTTGTAATCAGAAGCAATCGGTG 120
Query 185 AAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGGAGCTTCGTTTCTTTGTCCAATCGTTT 244
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 121 AAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGGAGCTTCGTTTCTTTGTACAGTCCTTT 180
Query 245 AATATGTCTCGCAAAGTTGCCGATGAAGAGGCACATGCTGTTGGAGATTCGTTTCCAGAG 304
|||||||||||||||||||||||||| | | ||| |||||||||| | |||
Sbjct 181 AATATGTCTCGCAAAGTTGCCGATGA-G-GT----TGC------AGATTCGTTTTCGGAG 228
Query 305 GTTTATGTTGAAGGAGAGGTTAATGAGGAGGTTAATGGAACGAAGAAGCGATCTGATTGG 364
||| ||||||||||||||| | | || |||| ||||| |||||||||||||||||||
Sbjct 229 GTTGATGTTGAAGGAGAGGAGGTTTAAGATGTTATTGGAATGAAGAAGCGATCTGATTGG 288
Query 365 AGTCAATACCTCGATTTCGATTCAGT-AAATGATCGCCGGAGATTAGCTGGAGAAGAAGA 423
||| | || || ||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 289 AGTGAGTATCTTGATTTCGATTC-GCCAAATGATCGCCGGAGATTAGTTGGAGAAGAAGA 347
Query 424 CGATGTGAAGATTGTCACTGAGATGCC-AA-GCAATATGTTCAAAAGGCCAAAGCTGAAC 481
|||||| |||||||| ||||||||||| || | | |||||| || |||||||||||||||
Sbjct 348 CGATGTCAAGATTGTGACTGAGATGCCGAAAG-A-TATGTTTAAGAGGCCAAAGCTGAAC 405
Query 482 AAAGAGTCTAATGCTGGTGGATCATCATCAAATACAGGAGGTGAGAATAAAGACAGTAAT 541
||||| | ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 406 AAAGATTATAATGCTGGTGGATCATCATCAATTACAGGAGGTGGGAAGAAAGACAGTAAT 465
Query 542 G-AGATCTTCAAGCCTTCTTTCTCCA-GACGCAGCATCAAAAAGCC 585
| | ||||||||||||| ||||||| | ||||||||||||| |||
Sbjct 466 GCAC-TCTTCAAGCCTTCCTTCTCCACG-CGCAGCATCAAAATGCC 509
Score = 289 bits (156), Expect = 3e-77
Identities = 219/249 (88%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 651 ATGAAGTAGTGACGAGGAAGAAGGATATGGAAGAGAGGAATCTAGAGTCAGAAAGAGTTA 710
||| |||| |||| |||||||||||||| |||||||| |||||||||||||| ||| |||
Sbjct 524 ATGGAGTAATGACAAGGAAGAAGGATATAGAAGAGAGAAATCTAGAGTCAGAGAGAATTA 583
Query 711 CTAAGCCAGCTTCGAAATGGGACGCCTACTTAATCGATGACGAAGGAGAACACCAAGCAC 770
|||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 584 TTAAGCCAGCTTCGAAATGGGACGCCTACTTGATTGATGAGGAAGGAGAACATCAGGCAC 643
Query 771 CACCGCGATTTGGTGTTAAA-AAGGCCTTGAAGGATGA--C-GAAGTAGGAGGATGGGAC 826
|||| | | |||||| ||| || ||||||||||||| | | ||||||| |||||||
Sbjct 644 CACCACAAATTGGTG-GAAATAAAACCTTGAAGGATGATGCTCATGTAGGAGAATGGGAC 702
Query 827 AGAGCAGTAATGGAGATAAATACGGAATATCAGATAGTAGACGACGAGGTACATCCAGAT 886
|||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 AGAGCAATAATGGAGAGAAATACGGAATACCAGATAGTAGACGACGAGGTACATCCAGAT 762
Query 887 TTCATGTGA 895
|||||||||
Sbjct 763 TTCATGTGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5