BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71780.1
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476299 jgi|Araly1|476299|fgenesh2_kg.2__1429__AT1G71780.1 1275 0.0
> Ahg476299 jgi|Araly1|476299|fgenesh2_kg.2__1429__AT1G71780.1
Length=872
Score = 1275 bits (690), Expect = 0.0
Identities = 824/885 (93%), Gaps = 23/885 (3%)
Strand=Plus/Plus
Query 8 TAGTCATGTCATCGATGACGGAGAAGGAGAAGGAGAGAGATCCACCACCACCACATCAAG 67
||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1 TAGTCATGTCATCGATGAC------GGAGAAGGAGAGAGAT------CCACCACAGCAAG 48
Query 68 AGATTGAAGAGACTACTCCGTTGCTCGAAAATTCTCAACCGGAAAGTGAATTGAGATCGA 127
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 49 AGATTGAAGAGACTACTCCGTTGCTCGACGATTCTCAACCGGAAGGTGAATTGAGATCGA 108
Query 128 CGACCGCGGCGGCGAAGGTTCCTGAGGTGGAGATTCATCTGTATAAGTGTGGAAAAGGTC 187
|||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 109 CGACCGCGACGGCAAAGGTACCGGAGGTGGAGATCCATCTGTATAAGTGTGGAAAAGGTC 168
Query 188 CGATCGATGTGTTCAAGTCAAATCTCGGCGGTTATGAGCAGGATCAGCTCGAGGTTCGAT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGATCGATGTGTTCAAGTCAAATCTCGGCGGTTATGAGCAGGATCAGCTCGAGGTTCGAT 228
Query 248 CTATTCTTGAGAAATATGGCTTGAAAGCAATCTTCGCTTTCAACGTTGAGAAAGGTCGTG 307
|||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 229 CTATTCTTGATAAGTATGGATTGAAATCAATCTTCGCTTTCAACGTTGAGAAAGGTCGTG 288
Query 308 CTGTTCCGATCAGATTTCACCCTAGGAATGGTCGGTCTGTGTTGCCTTATAGGGATGGTG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTGTTCCGATCAGATTTCACCCTAGGAATGGTCGGTCTGTGTTGCCTTATAGGGATGGTG 348
Query 368 CCGTCATTTACATCGACGGTGAACCTCAGGATTCCCTGCTCAAACCCATCACCAGAATCA 427
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 349 CCGTCATTTACATCGACGGTGAACCTCAGGATTCCCTTCTCAAACCCATCACAAGAATCA 408
Query 428 TTCTCGGAGTTGTGATTGTTACGCTCTTAATAACATTTCTATTGAAAGACCCTCCAGCTT 487
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 409 TTCTCGGAGTTGTGATTGTTACGCTCTTAATAACATTTTTATTGAAAGACCCTCCAGCGT 468
Query 488 GGATCAAGAACAACATCTCCATTGGGACCTTTCCTCCATGGGTGCTCGCATGCATAGTTA 547
||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 469 GGATCAAGAACAACATCTCCATTGGTACTTTTCCTCCGTGGGTGCTCGCTTGCATAGTTA 528
Query 548 TAGTTTTCACTCGAGCTAGAAAGAGAACCAGGGACTTCTTCAAGAAGTATGGCTGGTAGT 607
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 529 TAGTATTCACTCGAGCTAGGAAGAGAACCAGAGACTTCTTCAAGAAGTATGGCTGGTAGT 588
Query 608 TTCGCAGACCCTAACACTCGTCTCGCTTAAAATGTGGTCGAAATTTGTAGTCTTTCATCG 667
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 589 TTCGCAGACCCTAACACTCGTCTTGCTTGAAATGTGGTCGAAATTTGTAGTCCTTCATCG 648
Query 668 ACCATATATATAGAGGTTCTCTTGCCTTAACCCAACAAGTTCC-CTTCCTTGGCAAGACT 726
|||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| |||
Sbjct 649 ACCATATATATAGAGGTTTTCTTGTCTTAACCCAACAAGTTCCTCT-CCTTGGCAACACT 707
Query 727 CTTCGTCTTTGATACGCCTTGAGGCGCCAAATTGCTTGCTTTCAGAACTAAGAGAGAGCA 786
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CTTTGTCTTTGATAAGCCTTGAGGCGCCAAATTGCTTGCTTTCAGAACTAAGAGAGAGCA 767
Query 787 ATCATTTTCTTCATTTGCATTTTGTTGAAGTTTATAGTTTTATGCATTTCCATGTGTAAT 846
| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 768 AGCATTTTCTTCATTTGCATCTTGTTGAAATTTTTAGTTTTATGCATTTCCATGTGTAAT 827
Query 847 GCGATTTGGTT----T---TT--GCCATTTTGATGGAAACTGATA 882
| ||| ||||| | || ||||||||||||||||||||||
Sbjct 828 GTGATGTGGTTAAAGTGGATTTTGCCATTTTGATGGAAACTGATA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34348748217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5