BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71790.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476300 jgi|Araly1|476300|fgenesh2_kg.2__1430__AT1G71790.1 1308 0.0
> Ahg476300 jgi|Araly1|476300|fgenesh2_kg.2__1430__AT1G71790.1
Length=979
Score = 1308 bits (708), Expect = 0.0
Identities = 787/825 (95%), Gaps = 6/825 (1%)
Strand=Plus/Plus
Query 12 GTCTTCTCAGAGGAGAAGTG--ttttttttCTCCGGCGAGGTTGGaaaaaaaTGGAGGCA 69
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 1 GTCTTCTCAGAGGAGAAGTGTTTTTTTTTTCTCCGGCGAGGTT-GAGAAAAATGGAGGCA 59
Query 70 GCTTTGGGACTTCTCCGGAGAATGCCGCCGAAGCAGTCGGAGACGGCTCTATCTGCTCTT 129
|| ||||||||||| | |||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 60 GCGTTGGGACTTCTGAGAAGAATGCCGCCGAAACAGTCGGAGACGGCTCTCTCTGCACTT 119
Query 130 CTAAGCCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAG 189
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTAAGTCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAG 179
Query 190 GTGTTACGTGATATTGAAAGTGGGAAAGATTTCATCTTGTGTGAGTATAATAGAGATGCA 249
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GTGTTGCGTGATATTGAAAGTGGGAAAGATTTCATCTTGTGTGAGTACAATAGAGATGCT 239
Query 250 GATTCCTACAGGTCACCTTGGTCAAATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTAC 309
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 240 GATTCCTACAGGTCACCTTGGTCGAATAAGTACCTTCCTCCGCTAGAGGATGCTCTTTAC 299
Query 310 CCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGT 369
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 300 CCATCGTCAGAATTAAGAAAGCTTGAAGTTGAAGCCAATGATATCTTTGCAATCTACCGT 359
Query 370 GACCAGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGAAGGC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GACCAGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGAAGGC 419
Query 430 TTTGTGGCATGTTTCCTTATCAAGAA--A-GATGGGTCAAAGTCAGGTCATGGTCGGAGG 486
||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||
Sbjct 420 TTTGTGGCATGTTTCCTTATCAAAAAGGAAGATGGATCAAAGTCAGGTCATGGTCGGAGG 479
Query 487 GGATGCCTGGAGGAAGGAGCGTGGGATGCCATACATGTTATACAGGTTGGTTCAGAGGAG 546
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GGATGCCTGGAGGAAGGAGCGTGGGATGCCATACATGTTATACAGGTTGGTCCAGAGGAG 539
Query 547 GAGGAAATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGAT 606
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 540 GAGGAAATGGCACAGTATTGCTTAACAAGTACCATCATGCTCTCTCTGACCACTGATGAT 599
Query 607 GAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAATGAAAATGGAGCTA 666
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 600 GAGTCTTCAGGCAAATTTGGCTTATCTGGATCTATTAGAAGACAAATGAAAATGGAGTTA 659
Query 667 GCAGTAGCTGACGGACACCTGTGCAATATGGGGAGAATGATTGAAGAATTGGAAGGCAAA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCAGTAGCTGACGGACACCTGTGCAATATGGGGAGAATGATTGAAGAATTGGAAGGCAAA 719
Query 727 CTGAGGAACTCACTTGATCAGGTTTACTTTGGGAAGACAAGAGAAATGGTTTGCACATTG 786
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 CTGAGGAACTCGCTTGATCAGGTTTACTTTGGGAAGACGAGAGAAATGGTTTGCACATTG 779
Query 787 CGTCCACCAGCTGAGATTGTACAAATGAGATTGCCTGACACCTGA 831
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 CGTCCACCAGCTGAGATTGTACAAATGAGATTACCTGACACCTGA 824
Score = 154 bits (83), Expect = 1e-36
Identities = 134/157 (85%), Gaps = 9/157 (6%)
Strand=Plus/Plus
Query 875 ATTTGTTTGTTTTGGTTGGTCTGATCTTAAACGCTTCTCC-GAGTGTTTTGTGTGGATGT 933
||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 824 ATTTGTTTGTTTTGGTTGGTCTGATCTTAAACGCTTC-CCTGACTGTTTTGTGTGGATGC 882
Query 934 CTCTTACTCC----CATGTTTTTCTCTGACTTCACCATCATGTGACCATCTTTTCCCATA 989
|||||||| | ||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 883 CTCTTACTTTGTTGCGTGTTTTTCTCTGACTTCACCATCATGTGATTACCTTTTTCCATA 942
Query 990 AATAT--AACGAA-TGATGCAGTTTTAAAAGTCGTAT 1023
|||| || ||| | |||| ||||| ||||||||||
Sbjct 943 GATATGCAAAGAAATTATGCGGTTTTTAAAGTCGTAT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5