BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71800.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908776 jgi|Araly1|908776|Al_scaffold_0002_1857 2161 0.0
> Ahg908776 jgi|Araly1|908776|Al_scaffold_0002_1857
Length=1383
Score = 2161 bits (1170), Expect = 0.0
Identities = 1310/1379 (95%), Gaps = 4/1379 (0%)
Strand=Plus/Plus
Query 164 TCATCATCCCAACGACGCTGCGTTTTTGTTGGGAACATTCCTTACGACGCGACCGAGGAA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TCATCATCCCAACGACGCTGCGTTTTTGTTGGGAACATTCCTTACGACGCGACCGAGGAA 66
Query 224 CAACTTAGAGAAATTTGTGGAGAAGTTGGACCTGTTGTCTCGTTTAGATTAGTTACGGAT 283
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 67 CAACTCAGAGAAATTTGTGGAGAGGTTGGACCTGTTGTCTCGTTTAGATTAGTTACGGAT 126
Query 284 AGAGAAACTGGTAAACCAAAAGGCTACGGATTTTGTGAGTATAAAGACGAAGAAACAGCA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGAGAAACTGGTAAACCAAAAGGCTACGGATTTTGTGAGTATAAAGACGAAGAAACAGCA 186
Query 344 TTAAGTGCTCGTCGTAATCTTCAGAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGAT 403
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 TTGAGTGCTCGTCGTAATCTTCAAAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGAT 246
Query 404 TTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGAGTCAAGGAGGACCTGGT 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 247 TTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGAGTCAAGGAGGATCTGGT 306
Query 464 TTGCCATCTACTACTACTG-TGACAGAGTCTCAAAAGCAGATTGGAGGGCCAGTAGATTC 522
||||| |||||| || | ||||||||||||| ||||||||||||||||| | |||| |
Sbjct 307 TTGCCTTCTACTTCTG-TAATGACAGAGTCTCAGAAGCAGATTGGAGGGCCTGGAGATAC 365
Query 523 AAATATGCATCAGCCAGTTGGTCTCCACCTTGCTACAACAGCTGCATCTGTTATAGCGGG 582
||||||||| ||||| ||||||||| | |||||| |||||||||||||||||| |||||
Sbjct 366 AAATATGCACCAGCCCGTTGGTCTCAATGTTGCTATAACAGCTGCATCTGTTATGGCGGG 425
Query 583 TGCGCTAGGTGGTCCTCAGGTCGGTTCGCAGTTTACGCAAAGTAATCTGCAGGTTCCAGC 642
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 426 TGCGCTAGGTGGTCCTCAGGTCGGTTCGCAGTTTACACAAAGTAATCTGCAGGTTCCAGC 485
Query 643 TAGTGATCCCCTGGCTCTTCATCTAGCCAAGATGTCAAGAAGTCAGCTTACTGAAATTAT 702
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 486 TAGTGATCCCCTGACTCTTCATCTTGCCAAGATGTCTAGAAGTCAGCTTACTGAAATTAT 545
Query 703 ATCGTCCATTAAGTTAATGGCTACACAAAATAAGGAACATGCTAGACAGTTGTTGGTTTC 762
||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||| ||
Sbjct 546 ATCGTCCATTAAGTTAATGGCTACACAGAACAAGGAACAAGCTCGACAGTTGTTGGTATC 605
Query 763 AAGACCTCAGTTGCTAAAAGCTGTTTTCCTGGCGCAGGTAATGCTTGGGATTGTGAGTCC 822
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 606 AAGACCTCAGTTGCTTAAAGCTGTTTTCCTGGCGCAGATAATGCTTGGGATTGTGAGTCC 665
Query 823 GCAAGTGTTACAGTCGCCAAATATTGTTCAGGCCCCAAGTCATATGACAGGGTCTTCAAT 882
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GCAAGTCTTGCAGTCGCCAAATATTGTTCAGGCCCCAAGTCATATGACAGGGTCTTCAAT 725
Query 883 TCAAGATGCGCAATTATCTGGTCAAAACCTTTTACCGCCACTGGCACAAAGGTCACAGCA 942
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 726 TCAAGACACGCAATTATCTGGTCAAAATCTTTTACCGCCACTGGCTCAAAGGTCGCAGCA 785
Query 943 GCTAAGTCGTGCTCCCCATAGTCAGTATCCTGTCCAGCAATCTTCTAAACAACCTTTTAG 1002
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 786 GCTAAGTCGTGCTCCCCAGAGTCAGTATCCTGTTCAACAATCTTCTAAACAACCTTTTAG 845
Query 1003 TCAGATTCCACAACTAGTAGCACAACCAGGTCCTTCTTCTGTGAATCCTCCTCCTAGATC 1062
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 846 TCAGATTCCACAACTAGTAGCACAGCCAGGTCCTTCTTCTGTGAATCCTGCTCCTAGATC 905
Query 1063 CCAAGTTAAAGTCGAAA-ACGCTCCATTCCAACGCCAGCAAGTGGTTCCAGCTTCCACCA 1121
||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 906 CCAAGTTAAAGGCGAAACA-GCTCCATTCCAACGCCAGCAAGGGGTTCCAGCTTCCACCA 964
Query 1122 ACATAGGTTATAGTAGTCAGAATTCAGTTCCGAATAATGCTATCCAGCCATCTCAAGTAC 1181
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 965 ACATAGGTTACAGTAGTCAGACTTCAGTTCCGAATAATGCTATCCAGCCATCTCAAGTAC 1024
Query 1182 CCCACCAAGCATTACCAAATTCTGTGATGCAGCAAGGTGGGCAAACGGTATCATTAAATT 1241
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CCCACCCAGCATTAACAAATTCTGTGATGCAGCAAGGTGGGCAAACGGTATCATTAAATT 1084
Query 1242 TTGGCAAAAGAATAAACGAGGGTCCTCCTCATCAATCAATGAACAGACCATCAAAGATGA 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 ATGGCAAAAGAATAAACGAGGGTCCTCCTCATCAATCAATGAACAGACCATCAAAGATGA 1144
Query 1302 TGAAAGTGGAGGATAGGAGAACTACTTCACTCCCTGGAGGTCATGTGTCTAATTCAATGC 1361
|||||||||| ||||||||||| ||||||| ||| ||||| |||| ||||||||||||||
Sbjct 1145 TGAAAGTGGATGATAGGAGAACCACTTCACACCCCGGAGGCCATGCGTCTAATTCAATGC 1204
Query 1362 TTCCGAATCAAGCACAAGCTCCCCAGACACATATCTCTCCCGATGTTCAGTCAACATTGC 1421
|||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1205 TTCCGAATCAAGTACAAGCTCCCCAGACACGTATCTCCCCCGATGTCCAGTCAACATTGC 1264
Query 1422 TCCAGCAAGTAATGAACCTTACGCCAGAACAGTTGAGATTACTGACTCCAGAGCAACAAC 1481
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 1265 TCCAGCAAGTAATGAACCTTACGCCAGAACAGCTGAGATTGCTGACTCCAGAGCAACAGC 1324
Query 1482 AAGAGGTCTTAAAGCTGCAACAAGCCCTCAAGCAAGACCACATGATGCAGCCTTCATAG 1540
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1325 AAGAGGTCTTAAAGCTGCAACAAGCGCTCAAGCAAGACCACATGATGCAGCTTTCATAG 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5