BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71820.2
Length=2993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476305 jgi|Araly1|476305|fgenesh2_kg.2__1435__AT1G71820.1 1618 0.0
> Ahg476305 jgi|Araly1|476305|fgenesh2_kg.2__1435__AT1G71820.1
Length=2916
Score = 1618 bits (876), Expect = 0.0
Identities = 946/980 (97%), Gaps = 4/980 (0%)
Strand=Plus/Plus
Query 1834 GTTATGATTGATTTCCAAGCAGCTGAAAAGAAGAGAGTTGATGAACCTGCATCTGATATT 1893
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1802 GTTATGATTGATTTCCAAGCAGCTGAAAAGAAGAGAGTTGATGAACCTGCTTCTGATATT 1861
Query 1894 GGTCTGGAACCTCTATGCGCTATGATAAACAACAACCTTCGCTGCTACGACCTTGCCATG 1953
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1862 GGTCTGGAACCTCTATGCGCTATGATAAACAACAACCTTCGCTGCTATGACCTTGCCATG 1921
Query 1954 GAGTTAAGTAATAGCACTTTAGAAGCTCTTCCACAAAATTATGCAGAGCAGGTGAATTTT 2013
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1922 GAGTTGAGTAATAGCACTTTAGAAGCTCTTCCACAGAATTATGCGGAGCAGGTGAATTTT 1981
Query 2014 GAAGACACTTGCAAAGGTTTCTTGGAGGTGGCTAAGGAAGCAGTGCATCAAACAGTTCGC 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 GAAGACACTTGCAAAGGTTTCTTGGAGGTGGCTAAGGAAGCAGTGCATCAAACAGTTCGC 2041
Query 2074 GTTATCTTTGAGGATCCAGGAGTTCAGGAATTACTTGTCAAGCTTTACCAGAAAGAATGG 2133
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2042 GTTATCTTTGAGGATCCAGGAGTTCAGGAATTACTTGTTAAGCTTTACCAGAAAGAATGG 2101
Query 2134 TGCGAGGGACAGGTTACCGAGTACCTCGTGGCAACTTTCGGTGATTATTTCACAGATGTG 2193
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2102 TGCGAGGGACAGGTTACCGAGTACCTCGTGGCAACTTTTGGTGATTATTTCACAGATGTG 2161
Query 2194 AAAATGTATGTCGAAGAAAGATCATTTAGAAGATTTGTCGAAGCATGTTTGGAAGAAACA 2253
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2162 AAAATGTATGTCGAAGAAAGATCATTTAGAAGATTTGTCGAAGCTTGTTTGGAAGAAACA 2221
Query 2254 GTCGTTGTCTATGTTGACCATCTCCTAACTCAGAAAAACTACATCAAGGAAGAAACTATT 2313
|| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2222 GTTGTTGTTTATGTTGATCATCTCCTAACACAGAAAAACTACATCAAGGAAGAAACTATT 2281
Query 2314 GAACGGATGAGGCTAGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCA 2373
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 GAACGGATGAGGCTGGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCA 2341
Query 2374 TCTAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAG 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2342 TCTAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCCGCAGAG 2401
Query 2434 AGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGCACCAGCCTGACTGCCCG 2493
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2402 AGTCTAGATGCATTTACACTCGTGTACTCGAACATTCTTGAGCACCAGCCTGACTGCCCG 2461
Query 2494 GCCGAGGTCGTAGAGAAGCTTGTTAGTCTGCGTGAAGGCATACCACGGAAGGACACAAAA 2553
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2462 GCTGAGGTCGTAGAGAAGCTTGTTAGTCTGCGTGAAGGCATACCACGGAAGGACACAAAA 2521
Query 2554 GAGGTGGTACAAGAGTGCAAAGAGATATATGAGAACACACTGGTAGATGGTAATCCTCCA 2613
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2522 GAGGTGGTACAAGAGTGCAAAGAGATATATGAGAACACTCTGGTAGATGGTAATCCTCCC 2581
Query 2614 AAGACAGGATTTGTATTCCCGAGAGTCAAGTGCTTAACTGCTTCCAAAGGATCTATGTGG 2673
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 2582 AAGACAGGATTTGTATTCCCGAGAGTCAAGTGCTTAGCTGCTTCCAAAGGATCTCTCTGG 2641
Query 2674 CGAAAACTCACTTAATCTGTAAAACAGCGTTCAGCGTTTGCGTCCGTAACTGCTTTTCTA 2733
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 2642 CGAAAACTCACTTAATCTGTAAAACAGCGTTCAGCGTTTGCGTCCGCCAGTGCTTTTCAA 2701
Query 2734 G-TT-GAGATGATGTTCTTTCTCCAAATTATGGCGTTTGCGTCCATGTCttctt-tttct 2790
|| | |||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 2702 AATTTGGGATGATGTTCTTTCTCCATATTATGGCGTTTGCGTCCATGTCTTCTTCTTT-T 2760
Query 2791 ttgcatggtatctttcctct 2810
||||||||||| ||||||||
Sbjct 2761 TTGCATGGTATATTTCCTCT 2780
Score = 1463 bits (792), Expect = 0.0
Identities = 866/901 (96%), Gaps = 7/901 (1%)
Strand=Plus/Plus
Query 71 aaaaCCGGCGAGACGGAAAATTTCAGCGTTTCCGAAC-TTTCCATTAGAGTCGCGAGACG 129
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAAACCGGCGAGACGGAAAATTTCAGCGTTTCCGAACTTTTCCATTAGAGTCGCGAGACG 60
Query 130 ATAGATGAGACTCGTTCCAGAAATTTAATCGTTGCTTCTCTTCCCAGCTGA--T-CTGCG 186
| ||| |||||| |||||||| |||||||||||| |||||||||||||||| | |||||
Sbjct 61 AGAGACGAGACTTGTTCCAGAGATTTAATCGTTGTTTCTCTTCCCAGCTGATCTGCTGCG 120
Query 187 TCCAACATCACTGTTTCCAGGATCTTCAGAATCAGCGAAGGAAGAAGATAAGAGGACGAC 246
| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 121 TTCAACACCACTGTTTCCAGGATCTTCAGAATCAGCGAAGGAAGAAGATAA-AGAACGAC 179
Query 247 GAAGTAATTGAAGTTGGAGAATCGCACATTTGG--CTCTCGATATTTGCTCAATGACTTC 304
|||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 180 GAAGTAATTGGAGTTGAAGAATCGCAAATTTGGCTCTCTCGATATTTGCTCAATGACTTC 239
Query 305 TTATTCGAGGTAGCCTTCAATTTAGGATCGGAGTTCGTAAATAAGGTGATTTAGCGAAGA 364
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TTATTCGAGATAGCCTTCAATTTAGGATCGGAGTTCTTAAATAAGGTGATTTAGCGAAGA 299
Query 365 TGATGGTCGAAGATCTTGGTGTGGAAGCGAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGC 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TGATGGTCGAAGATCTTGGTGTGGAAGCGAAGGAAGCGGCTGTGCGAGAGGTGGCGAAGC 359
Query 425 TCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTC 419
Query 485 GTCAACAGGCAAATGATGCACAGCTCAGTACTATGGTTGCTGAGCAGGTTGAACAAGCTC 544
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 420 GTCAACAGGCGAATGATGCACAGCTCAGTACCATGGTTGCTGAGCAGGTTGAACAAGCAC 479
Query 545 AAGCTGGGTTAGAGTCACTTTCATCATCTGAGAAAACCATTTATGAACTGCGGGATAATT 604
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 480 AAGCTGGGTTAGAGTCGCTTTCTTCATCTGAGAAAACCATTTATGAACTGAGGGATAATT 539
Query 605 TCATTTCTATCGACAAGCTTTGTCAGGAATGTCAAACTTTGATTGACAATCATGACCAAA 664
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 TCATTTCTATCGACAAGCTTTGTCAAGAATGTCAAACTTTGATTGACAATCATGACCAAA 599
Query 665 TAAAGCTGCTGAGTAACGCCAGGAATAATCTAAACAAAACTCTAAAGGATGTAGAAGGTA 724
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAAGCTGCTGAGTAATGCCAGGAATAATCTAAACAAAACTCTAAAGGATGTAGAAGGTA 659
Query 725 TGATGTCAATTTCTGTTGAAGCTGCTGCGGCTAGGGATTCTTTGAGTGATGATAAAGAAA 784
|||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||
Sbjct 660 TGATGTCAATTTCTGTTGAAGCTGCTGCGGCTCGGGAGTCTCTGAGTGACGATAAAGAAA 719
Query 785 TCGTTAACACTTATGAGAGATTAACAGCACTTGATGGTAAACGAAGATTTGCATTAGCAG 844
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 TCGTTAACACTTACGAGAGATTAACAGCACTTGATGGTAAACGAAGATTTGCGTTAGCAG 779
Query 845 CTGCTGGAGAGGAGGTTGGGAGGCTGAGGGAGTATTTTGAAGATGTTGATAGAACATGGG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGCTGGAGAGGAGGTTGGGAGGCTGAGGGAGTATTTTGAAGATGTTGATAGAACATGGG 839
Query 905 AAACATTCGAGAAGACACTATGGGGTCATGTTTCCAACTATTACAAACTTTCTAAAGAAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAACATTCGAGAAGACACTATGGGGTCATGTTTCCAACTATTACAAACTTTCTAAAGAAA 899
Query 965 G 965
|
Sbjct 900 G 900
Score = 1208 bits (654), Expect = 0.0
Identities = 692/711 (97%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 1125 GGTTGTTGAGATGCAAGAAATTCTAGACCAACAGCTTGCTGAAGAAGCAGCAGAGGCTGA 1184
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 928 GGTTGTCGAGATGCAAGAAATTCTTGACCAACAACTTGCTGAAGAAGCAGCAGAGGCTGA 987
Query 1185 GGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAGAAATCTACTAC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAGAAATCTACTAC 1047
Query 1245 AACGTCAGCGTCGTCAAAGGGTCTTGCTCAACAGAAATTAAAAGTCCAAGGGAAAGGCTA 1304
||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1048 AACGTCAGCTTCATCAAAGGGTCTTGCTCAACAGAAGTTAAAAGTTCAAGGGAAAGGCTA 1107
Query 1305 CAAGGACAAATGCTACGAGCAAATTCGGAAGGCGGTTGAAGATCGATTCAACAGGCTTTT 1364
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 1108 CAAGGACAAATGCTACGAGCAAATTCGAAAGGCAGTTGAAGATCGATTCAACAGGCTTCT 1167
Query 1365 GACGCTTGTCTTTGAAGATCTAAAAGCAGCTTTGGAAGAAGCTAGAATGATTGGAGAGGA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GACGCTTGTCTTTGAAGATCTAAAAGCAGCTTTGGAAGAAGCTAGAATGATTGGAGAGGA 1227
Query 1425 ACTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCTCCAAGATACGAGATATTTCA 1484
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1228 ACTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCTCCGAGATATGAGATATTTCA 1287
Query 1485 GCTTATGGTGAACCTGTATACCGAGAGATTCATACAAATGCTCAGATTGCTCAGTGACAG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 GCTTATGGTGAACCTGTATACCGAGAGATTCATACAAATGCTCAGATTGCTCAGTGACAG 1347
Query 1545 AGCAAACGATCTGACAAATATAGAGATTTTAAAGGTGACTGGTTGGGTGGTAGAGTACCA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AGCAAACGATCTGACAAATATAGAGATTTTAAAGGTGACTGGTTGGGTGGTAGAGTACCA 1407
Query 1605 AGAAAACTTGATTGCACTTGGTGTTGATGATTCACTAGCTCAAGTGTGTTCTGAGAGCGG 1664
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1408 AGAAAACTTGATTGCACTTGGTGTTGATGATTCGCTAGCTCAAGTGTGTTCTGAGAGTGG 1467
Query 1665 TTCAATGGATCCTCTAATGAATGCATATGTTGAAAGAATGCAAGCTACAACGAAGAAATG 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTCAATGGATCCTCTAATGAATGCATATGTTGAAAGAATGCAAGCTACAACGAAGAAATG 1527
Query 1725 GTACATGAATATCCTAGAGGCGGATAAGGTGCAACCACCTaaaaaaaCTGAGGAAGGAAA 1784
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1528 GTACATGAATATCCTTGAGGCGGATAAGGTGCAACCACCAAAAAAAACAGAGGAAGGGAA 1587
Query 1785 ATTATATACACCGGCTGCTGTAGATTTATTCAGAATACTTGGAGAGCAAGT 1835
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ATTATACACACCGGCTGCTGTAGATTTATTCAGAATACTTGGAGAGCAAGT 1638
Score = 191 bits (103), Expect = 3e-47
Identities = 129/140 (92%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 2839 tctttttcttACCTTTATTCCTGGATTTGAAAGTTGAAACGCTCGGTGGCCACTTGCACT 2898
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2778 TCTTTTT-TTACCTTTATTCCTGGATTTGAAAGTTGAAACGTTCGGTGGCCACTTGCACT 2836
Query 2899 AGGATATTATCCCGTTGTATTTAGGAGGCGTAtttttttGTCGCAAATT-TTAAT---T- 2953
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 2837 AGGATATTATCCCGTTGTATTTAGGAGGCATATTTTTTTGTCGCAAAATGTTAATCGATT 2896
Query 2954 -CTACTGTTTCATTTAATTT 2972
||||||||||||| |||||
Sbjct 2897 TCTACTGTTTCATTGAATTT 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113013756915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5