BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71830.1
Length=2570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926538 jgi|Araly1|926538|scaffold_202099.1 3081 0.0
Ahg913250 jgi|Araly1|913250|Al_scaffold_0001_3504 1192 0.0
Ahg930582 jgi|Araly1|930582|scaffold_303039.1 211 2e-53
> Ahg926538 jgi|Araly1|926538|scaffold_202099.1
Length=1920
Score = 3081 bits (1668), Expect = 0.0
Identities = 1837/1921 (96%), Gaps = 2/1921 (0%)
Strand=Plus/Plus
Query 398 ATTTAGCATTGTTGTTTGAAATGGAG-TCGAGTTATGTGGTGTTTATCTTACTTTCACTG 456
|||||||||||||||| ||||||||| | || | ||||||||| |||||||||| ||
Sbjct 1 ATTTAGCATTGTTGTTCGAAATGGAGAT-GACTCGGGTGGTGTTTGTCTTACTTTCGTTG 59
Query 457 ATCTTACTTCCGAATCATTCACTGTGGCTTGCTTCTGCTAATTTGGAAGGTGATGCTTTG 516
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTTACTTTCGAATCATTCACTGTGGCTTGCTTCTGCTAATTTGGAAGGTGATGCTTTG 119
Query 517 CATACTTTGAGGGTTACTCTAGTTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACG 576
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 CATACTTTGAGGGTCACTCTAGTTGATCCGAACAATGTCTTGCAGAGCTGGGATCCTACG 179
Query 577 CTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGA 636
|| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 CTTGTGAATCCTTGTACATGGTTCCACGTCACTTGCAACAACGAGAACAGTGTCATTAGA 239
Query 637 GTTGATTTGGGGAATGCAGAGTTATCTGGCCATTTAGTTCCAGAGCTTGGTGTGCTCAAG 696
|||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 240 GTTGATTTAGGAAATGCAGAGTTGTCTGGCCATTTAGTTCCGGAGCTTGGTGTGCTCAAG 299
Query 697 AATTTGCAGTATTTGGAGCTTTACAGTAACAACATAACTGGCCCGATTCCTAGTAATCTT 756
||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 300 AATCTGCAGTATTTGGAGCTTTACAGTAACAATATAACTGGCCCAATTCCTAGTAATCTT 359
Query 757 GGAAATCTGACAAACTTAGTGAGTTTGGATCTTTACTTAAACAGCTTCTCCGGTCCTATT 816
||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 360 GGAAATCTGACGAACTTAGTGAGCTTGGATCTTTACTTAAACAGCTTCACTGGTCCTATC 419
Query 817 CCGGAATCATTGGGAAAGCTTTCAAAGCTGAGATTTCTCCGGCTTAACAACAACAGTCTC 876
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 420 CCTGAATCATTGGGAAAGCTTTCAAAGCTGAGGTTTCTCCGGCTGAACAACAACAGTCTC 479
Query 877 ACTGGGTCAATTCCTATGTCACTGACCAATATTACTACCCTTCAAGTGTTAGATCTATCA 936
|||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 480 ACTGGGTCAATTCCCATGGCACTGACTAATATCACTACCCTTCAAGTGTTAGATCTATCA 539
Query 937 AATAACAGACTCTCTGGTTCAGTTCCTGACAATGGCTCCTTCTCACTCTTCACACCCATC 996
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATAACCGACTCTCTGGTTCAGTTCCTGACAATGGCTCCTTCTCACTCTTCACACCCATC 599
Query 997 AGTTTTGCTAATAACTTAGACCTATGTGGACCTGTTACAAGTCACCCATGTCCTGGATCT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTTTTGCTAATAACTTAGACCTATGTGGACCTGTTACAAGTCACCCATGTCCTGGATCT 659
Query 1057 CCCCCGTTTTCTCCTCCACCACCTTTTATTCAACCTCCCCCAGTTTCCACCCCGAGTGGG 1116
||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||
Sbjct 660 CCCCCGTTTTCTCCTCCGCCACCTTTTATTCCACCTCCACCAGTTTCCACCCCAAGTGGA 719
Query 1117 TATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTCTTTGCT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 TATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTGTTTGCT 779
Query 1177 GCTCCTGCAATAGCCTTTGCTTGGTGGCGACGAAGAAAGCCACTAGATATTTTCTTCGAT 1236
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 780 GCTCCTGCAATAGCCTTTGCTTGGTGGCGGCGAAGAAAACCACTAGATATTTTCTTCGAT 839
Query 1237 GTCCCTGCCGAAGAAGATCCAGAAGTTCATCTGGGACAGCTCAAGAGGTTTTCTTTGCGG 1296
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 840 GTGCCTGCCGAAGAAGATCCAGAGGTTCATCTGGGACAGCTCAAGAGGTTTTCTTTACGG 899
Query 1297 GAGCTACAAGTGGCGAGTGATGGGTTTAGTAACAAGAACATTTTGGGCAGAGGTGGGTTT 1356
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct 900 GAGCTACAAGTGGCGAGTGATGGATTTAGTAACAAGAATATTTTGGGTAGAGGCGGGTTC 959
Query 1357 GGGAAAGTCTACAAGGGACGCTTGGCAGACGGAACTCTTGTTGCTGTCAAGAGACTGAAG 1416
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGGAAAGTCTACAAGGGACGTTTGGCAGACGGAACTCTTGTTGCTGTCAAGAGACTGAAG 1019
Query 1417 GAAGAGCGAACTCCAGGTGGAGAGCTCCAGTTTCAAACAGAAGTAGAGATGATAAGTATG 1476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1020 GAAGAGCGAACTCCAGGTGGAGAGCTCCAGTTTCAGACAGAAGTAGAGATGATAAGTATG 1079
Query 1477 GCAGTTCATCGAAACCTGTTGAGATTACGAGGTTTCTGTATGACACCGACCGAGAGATTG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCAGTTCATCGAAACCTGTTGAGATTACGAGGTTTCTGTATGACACCGACCGAGAGATTG 1139
Query 1537 CTTGTGTATCCTTACATGGCCAATGGAAGTGTTGCTTCGTGTCTCAGAGAGAGGCCACCG 1596
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1140 CTCGTGTATCCTTACATGGCCAACGGAAGCGTTGCGTCGTGTCTCAGAGAGAGGCCACCG 1199
Query 1597 TCACAACCTCCGCTTGATTGGCCAACGCGGAAGAGAATCGCGCTAGGCTCAGCTCGAGGT 1656
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 TCACAGCCTCCACTCGATTGGCCAACGCGGAAGAGAATCGCGCTAGGCTCAGCTCGCGGT 1259
Query 1657 TTGTCTTACCTACATGATCACTGCGATCCGAAGATCATTCACCGTGACGTAAAAGCAGCA 1716
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTGTCTTACCTACACGATCACTGCGATCCGAAGATCATTCACCGTGACGTAAAAGCAGCA 1319
Query 1717 AACATCCTCTTAGACGAAGAATTCGAAGCGGTTGTTGGAGATTTCGGGTTGGCAAAGCTA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 AACATCCTCTTAGACGAAGAATTCGAAGCGGTTGTTGGAGATTTCGGGTTGGCGAAGCTA 1379
Query 1777 ATGGACTATAAAGACACTCACGTGACAACAGCAGTCCGTGGCACCATCGGTCACATCGCT 1836
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1380 ATGGACTACAAAGACACTCACGTGACAACAGCCGTCCGTGGCACAATCGGTCACATCGCT 1439
Query 1837 CCAGAATATCTCTCAACCGGAAAATCTTCAGAGAAAACCGACGTTTTCGGATACGGAATC 1896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1440 CCAGAATATCTCTCAACCGGAAAATCTTCAGAGAAAACCGACGTTTTCGGTTACGGAATC 1499
Query 1897 ATGCTTCTAGAACTAATCACAGGACAAAGAGCTTTCGATCTCGCTCGGCTAGCTAACGAC 1956
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATGCTTCTGGAACTAATTACGGGACAAAGAGCTTTCGATCTCGCTCGGCTAGCTAACGAT 1559
Query 1957 GACGACGTCATGTTACTTGACTGGGTGAAAGGATTGTTGAAGGAGAAGAAGCTAGAGATG 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GACGACGTCATGTTACTTGACTGGGTGAAAGGATTGTTGAAGGAGAAGAAGCTAGAGATG 1619
Query 2017 TTAGTGGATCCAGATCTTCAAACAAACTACGAGGAGAGAGAACTGGAACAAGTGATACAA 2076
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1620 TTAGTGGATCCAGATCTTCAGACAAACTACGAGGAAAGAGAACTGGAACAAGTGATACAA 1679
Query 2077 GTGGCGTTGCTATGCACGCAAGGATCACCAATGGAAAGACCAAAGATGTCTGAAGTTGTA 2136
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1680 GTGGCGTTGCTTTGCACGCAAGGATCACCAATGGAGAGACCAAAGATGTCTGAAGTTGTA 1739
Query 2137 AGGATGCTGGAAGGAGATGGGCTTGCGGAGAAATGGGACGAATGGCAAAAAGTTGAGATT 2196
|||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1740 AGGATGCTTGAAGGAGATGGGCTTGCGGAGAGATGGGACGAGTGGCAAAAAGTTGAGATA 1799
Query 2197 TTGAGGGAAGAGATTGATTTGAGTCCTAATCCTAACTCTGATTGGATTCTTGATTCTACT 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTGAGGGAAGAGATTGATTTGAGTCCTAATCCTAACTCTGATTGGATTCTTGATTCTACT 1859
Query 2257 TACAATTTGCACGCCGTTGAGTTATCTGGTCCAAGGTaaaaaaaaaaaaCATAAAATTAT 2316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1860 TACAATTTGCACGCCGTTGAGTTATCTGGTCCAAGGTAAAAAAAAAATTGATAAAATTAT 1919
Query 2317 T 2317
|
Sbjct 1920 T 1920
> Ahg913250 jgi|Araly1|913250|Al_scaffold_0001_3504
Length=1845
Score = 1192 bits (645), Expect = 0.0
Identities = 1342/1677 (80%), Gaps = 54/1677 (3%)
Strand=Plus/Plus
Query 646 GGGAATGCAGAGTTATCTGGCCATTTAGTTCCAGAGCTTGGTGTGCTCAAGAATTTGCAG 705
||||||||||| || ||||| || || ||||| ||||||| ||||||||| ||||||
Sbjct 196 GGGAATGCAGACTTGTCTGGTCAATTGGTTCCTCAGCTTGGCCAGCTCAAGAACTTGCAG 255
Query 706 TATTTGGAGCTTTACAGTAACAACATAACTGGCCCGATTCCTAGTAATCTTGGAAATCTG 765
|| ||||||||||||||||| |||||||| || ||| |||| ||| ||||||| ||||||
Sbjct 256 TACTTGGAGCTTTACAGTAATAACATAACCGGGCCGGTTCCAAGTGATCTTGGGAATCTG 315
Query 766 ACAAACTTAGTGAGTTTGGATCTTTACTTAAACAGCTTCTCCGGTCCTATTCCGGAATCA 825
|||||||||||||| |||||||||||| ||||||| ||| | ||||| ||||| || ||
Sbjct 316 ACAAACTTAGTGAGCTTGGATCTTTACCTAAACAGATTCACTGGTCCAATTCCAGACTC- 374
Query 826 T-TGGGAAAGCT-TTCAAAGCTGAGATTTCTCCGGCTTAACAACAACAGTCTCACTGGGT 883
| |||||||||| ||| ||||| | ||||| ||||| ||||| ||||||||||| ||
Sbjct 375 TCTGGGAAAGCTATTC-AAGCTTCGCTTTCTTCGGCTCAACAATAACAGTCTCACCGGAC 433
Query 884 CAATTCCTATGTCACTGACCAATATTAC-TACCCTTCAAGTGTTAGATCTATCAAATAAC 942
||||||| |||||| |||| ||||| || | | |||||||| || ||||| || || |||
Sbjct 434 CAATTCCCATGTCATTGACTAATATCACGT-CTCTTCAAGTTTTGGATCTGTCGAACAAC 492
Query 943 AGACTCTCTGGTTCAGTTCCTGACAATGGCTCCTTCTCACTCTTCACACCCATCAGTTTT 1002
|| | ||||| || |||||||| ||||| |||||||| |||||||| ||||||||||||
Sbjct 493 CGATTATCTGGATCTGTTCCTGATAATGGTTCCTTCTCGCTCTTCACTCCCATCAGTTTT 552
Query 1003 GCTAATAACTTAGACCTATGTGGACCTGTTACAAGTCACCCATGTCCTGGATCTCCCCCG 1062
||||| ||||| || ||||| || || ||||| || | || || |||||||||||||||
Sbjct 553 GCTAACAACTTGGATCTATGCGGTCCAGTTACTAGCCGTCCTTGCCCTGGATCTCCCCCG 612
Query 1063 TTTTCTCCTCCACCACCTTTTATTCAACCTCCCCCAGTTTCC-ACCCCGAG-TGGGTATG 1120
||||||||||||||||||||||| | ||||||| |||| || || || || |||||||
Sbjct 613 TTTTCTCCTCCACCACCTTTTATACCACCTCCCATAGTT-CCTACACC-AGGTGGGTATA 670
Query 1121 GTA-TAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTCTTTGCTGCT 1179
|| || ||||||| || || || ||||||||||| |||||||||||||| ||||||||
Sbjct 671 GTGCTA-CTGGAGCCATTGCGGGAGGAGTTGCTGCTGGTGCTGCTTTGCTATTTGCTGCC 729
Query 1180 CCTGCAATAGCCTTTGCTTGGTGGCG-ACGAAGAAAGCCACTAGATATT-TTCTTCGATG 1237
||||| |||| |||||||||||||| | ||||||| || | ||| ||| ||||| ||||
Sbjct 730 CCTGCTTTAGCTTTTGCTTGGTGGCGTA-GAAGAAAACCTCAAGA-ATTCTTCTTTGATG 787
Query 1238 TCCCTGCCGAAGAAGATCCAGAAGTTCATCT-GGGACAGCTCAAGAGGTTTTCTTTGCGG 1296
| ||||| ||||| || || |||||||| || ||| ||||| ||| |||| ||| | |||
Sbjct 788 TTCCTGCTGAAGAGGACCCTGAAGTTCA-CTTGGGGCAGCTTAAGCGGTTCTCTCTACGG 846
Query 1297 GAGCTACAAGTGGCGAGTGATGGGTTTAGTAACAAGAACATTTTGGGCAGAGGTGGGTTT 1356
|| || ||||| || | ||| | || || ||||||||||| |||||| |||||||||||
Sbjct 847 GAACTTCAAGTAGCAACAGATAGCTTCAGCAACAAGAACATCTTGGGCCGAGGTGGGTTT 906
Query 1357 GGGAAAGTCTACAAGGGACG-CTTGGCAGACGGAACTCTTGTTGCTGTCAAGA-GACTGA 1414
|| ||||||||||| || || |||| | || ||||| ||||| || ||||| | | || |
Sbjct 907 GGAAAAGTCTACAAAGGCCGTCTTG-CTGATGGAACACTTGTCGCAGTCAA-ACGGCTTA 964
Query 1415 AGGAAGAGCGAACTCCAGGTGGAGAGCTCCAGTTTCAAACAGAAGTAGAGATGATAAGTA 1474
| |||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| |
Sbjct 965 AAGAAGAGCGCACCCCAGGTGGCGAGCTCCAGTTTCAGACAGAAGTGGAGATGATAAGCA 1024
Query 1475 TGGCAGTTCATC-GAAACCTGT-TGAGATTACGAGGTTTCTGTATGACACCGACCGAGAG 1532
|||| ||||| | |||| || | | || |||| ||||| |||||||| || ||||||||
Sbjct 1025 TGGCCGTTCA-CAGAAATCT-TCTCAGGCTACGCGGTTTTTGTATGACCCCTACCGAGAG 1082
Query 1533 ATTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTTGCTTCGTGTCTCAGAGAGAGG-C 1591
||||||||| |||||||||||||| || |||||||| ||||| ||| | ||||| | | |
Sbjct 1083 ATTGCTTGTTTATCCTTACATGGCTAACGGAAGTGTAGCTTCCTGTTTGAGAGA-ACGTC 1141
Query 1592 CACCGTCACAACCT-CCGCTTGATTGGCCAACGCGGA-AG-AGAATCGCGCTAGGCTCAG 1648
|||| || || | || || | ||||||| | | || | |||||||||||| ||||
Sbjct 1142 CACCATCGCAGT-TGCCTCTAGCCTGGCCAATAAG-ACAGCA-AATCGCGCTAGGATCAG 1198
Query 1649 CTCGAGGTTTGTCTTACCTACATGATCACTGCGATCCGAAGATCATTCACCGTGACGTAA 1708
| | ||||||||||| || |||||||| ||||| || || || ||||||||||| || |
Sbjct 1199 CGAGGGGTTTGTCTTATCTTCATGATCATTGCGACCCCAAAATTATTCACCGTGATGTGA 1258
Query 1709 AAGCAGCAAACATCCTCTTAGACGAAGAATTCGAAGCGGTTGTTGGAGATTTCGGGTTGG 1768
|||| || || || || || ||||| ||||| || ||||| || || |||||||||||||
Sbjct 1259 AAGCTGCTAATATTCTGTTGGACGAGGAATTTGAGGCGGTGGTAGGCGATTTCGGGTTGG 1318
Query 1769 CAAAGCTAATGGACTATAAAGACACTCACGTGACAACAGCAGTCCGTGGCACCATCGGTC 1828
| | ||| ||||| |||||||| || || || ||||| || || ||||| || || || |
Sbjct 1319 CTAGGCTTATGGATTATAAAGATACACATGTCACAACGGCTGTGCGTGGGACTATTGGAC 1378
Query 1829 ACATCGCTCCAGAATATCTCTCAACCGGAAAATCTTCAGAGAAAACCGACGTTTTCGGAT 1888
| || ||||| || ||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct 1379 ATATTGCTCCCGAGTATCTCTCAACTGGAAAATCTTCAGAGAAAACCGATGTTTTTGGCT 1438
Query 1889 ACGGAATCATGCTTCTAGAACTAATCACAGGACAAAGAGCTTTCGATCTCGCTCGGCTAG 1948
|||| ||||||||| | ||||| || ||||| || |||||||| ||||| || | || |
Sbjct 1439 ACGGGATCATGCTTTTGGAACTGATTACAGGTCAGAGAGCTTTTGATCTTGCAAGACTGG 1498
Query 1949 CTAACGACGACGACGTCATGTTACTTGACTGGGTGAAAGGA-TTGTTGAAGGAGAAGAAG 2007
| || || || ||||| ||| | || || ||||| ||||| || ||||||||||||||
Sbjct 1499 CGAATGATGATGACGTTATGCTCCTAGATTGGGTAAAAGGGCTT-TTGAAGGAGAAGAAA 1557
Query 2008 CTAGAGATG-TTAGTGGATCCAGATCTTCAAA-CAAACTACG-AGGAGAGAGAACTGGAA 2064
|| |||||| || |||||||| ||||| || | ||| |||| || || |||| | |||
Sbjct 1558 CTGGAGATGCTT-GTGGATCCTGATCTGCAGAGCAA-CTACACAGAAGC-AGAAGTAGAA 1614
Query 2065 CAAG-TGATACAAGTGGCG-TTGCTATGCACGCA-AGGATCACCAATGGAAAGACCAAAG 2121
|| | | ||||||||||| || || ||||| || || ||||| ||||||||||| |||
Sbjct 1615 CA-GCTCATACAAGTGGCTCTT-CTCTGCACACAGAGC-TCACCTATGGAAAGACCTAAG 1671
Query 2122 ATGTCTGAAGTTGTAAGGATGCTGGAAGGAGATGGGCTT-GCGGAGAAATGGGACGAATG 2180
|||||||| ||||| | ||||| ||||| || || || || |||||||||||||| ||
Sbjct 1672 ATGTCTGAGGTTGTTCGAATGCTTGAAGGTGACGGT-TTAGCTGAGAAATGGGACGAGTG 1730
Query 2181 GCAAAAAGTTGA-GATTTTGAGGGAAGAGATTGATTTGAGTCCTAATCCTAACTCTGATT 2239
||| ||||| || | |||| ||| | ||| | || || | || | || | ||| ||||
Sbjct 1731 GCAGAAAGTAGAAG-TTTTCAGGCAGGAGGTGGAGCTGTCTTCTCACCCCACCTCCGATT 1789
Query 2240 GGATTCTTGATTCTACTTACAAT-TTGCACGCCGTTGAGTTATCTGGTCCAAGGTaa 2295
|||| || |||||||| | ||| || || || |||||||| ||||||||||| |||
Sbjct 1790 GGATCCTCGATTCTACGGATAATCTT-CATGCTGTTGAGTTGTCTGGTCCAAGATAA 1845
> Ahg930582 jgi|Araly1|930582|scaffold_303039.1
Length=285
Score = 211 bits (114), Expect = 2e-53
Identities = 127/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1112 GTGGGTATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTCT 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 102 GTGGGTATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTGT 161
Query 1172 TTGCTGCTCCTGCAATAGCCTTTGCTTGGT-GGCGACGAAGAAAGCCACTAGATATTTTC 1230
||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 162 TTGATGCTCCTGCAATAGCCTTTGCTTG-TAGGCGACGAAGAAAGCCACAAGATATTTTC 220
Query 1231 TTCGATGTCCCTG 1243
|| ||||||||||
Sbjct 221 TTTGATGTCCCTG 233
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 998 GTTTTGCTAATAACTTAGACCTATGTGGACCTG 1030
|||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTGCTAATAACTTAGACCTATGTGGACCTG 33
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96901583280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5