BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71840.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476307 jgi|Araly1|476307|fgenesh2_kg.2__1437__AT1G71840.1 2026 0.0
> Ahg476307 jgi|Araly1|476307|fgenesh2_kg.2__1437__AT1G71840.1
Length=1444
Score = 2026 bits (1097), Expect = 0.0
Identities = 1361/1479 (92%), Gaps = 56/1479 (4%)
Strand=Plus/Plus
Query 36 TTGGAAGGGTTTTTG-TTGGG----aaaaaaaGAGAAGAAGGGTTTTTGTACTTTGTGTC 90
||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1 TTGAAAGGGTTTTTGTTTGGGAAAAAAAAAAAGAGAAGAAGGGTTTTTGTA--------C 52
Query 91 TTCTTGTTCCATCATCGTGACACGTCACACCTCCATTCATCTCCGCCGTCCTC-TTCCTG 149
| |||||||||||||||||||||||||| | |||||||||||||||||| || |||
Sbjct 53 -T-TTGTTCCATCATCGTGACACGTCACA---AC-TTCATCTCCGCCGTCCTCATT-CTG 105
Query 150 TTCTTAGTCGCGGCTGGAAAAAACTGTGGTgagagagagaagaagaagaagaagaagaTG 209
||||| |||||||||| ||||||||||||| | || ||||||||||||||
Sbjct 106 TTCTTGGTCGCGGCTGAAAAAAACTGTGGT-----------G-AG-AGAAGAAGAAGATG 152
Query 210 AGTAATAATACTAATAATACAGAGATGAATAATCTAGCGATGGAAGAAGAGGATGAAGGA 269
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 AGTAACAATAATAATAATACAGAGATGAATAATCTAGCGATGGAAGAAGAGGATGAAGGA 212
Query 270 GAGATTTTCCTTGGTGAATCCGATGTCCTCCGTGAAATCGATGTCGACGAAGAAGATCTT 329
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GAGATTTTTCTTGGTGAATCCGATGTCCTCCGTGAAATCGATGTCGACGAAGAAGATCTT 272
Query 330 CCTGAAGCAGATGATGATGATATGGACGATGATGGTGAACAATTTGATGAAAACGATGAC 389
||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 273 CCTGAGGCAGATGATGATGATATGGACGATGATGCTGAAGAATTTGATGAAAACGATGAC 332
Query 390 TCTGTTCACACATTCACTGGTCACAAAGGTGAGCTTTATGCATTGGCTTGTAGTCCAACA 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCTGTTCACACATTCACTGGTCACAAAGGTGAGCTTTATGCATTGGCTTGTAGTCCAACA 392
Query 450 GATGCTACACTTGTTGCAACTGGAGGTGGAGATGATAAAGCATTTCTCTGGAAAATTGGT 509
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 393 GATGCTACGCTTGTTGCAACTGGAGGTGGAGATGATAAAGCCTTTCTCTGGAAAATTGGT 452
Query 510 AATGGAGATTGGGCTGCTGAGCTTCCTGGTCACAAGGACTCTGTCTCTTGTTTAGCTTTT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AATGGAGATTGGGCTGCTGAGCTTCCTGGTCACAAGGACTCTGTCTCTTGTTTAGCTTTT 512
Query 570 AGCTATGATGGACAGTTACTTGCTTCTGGAGGATTAGATGGTGTTGTACAGATCTTTGAT 629
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 513 AGCTATGATGGACAGTTACTTGCATCTGGTGGATTAGATGGTGTTGTTCAGATCTTTGAT 572
Query 630 GCATCATCAGGGACTTTGAAATGTGTTTTGGATGGTCCTGGTGCTGGAATCGAGTGGGTG 689
||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 573 GCATCATCAGGGAATTTGAAATGTGTTTTCGATGGTCCAGGTGCTGGAATCGAGTGGGTG 632
Query 690 AGATGGCATCCGAGAGGACACATTGTGTTGGCTGGATCAGAAGATTGTTCTCTATGGATG 749
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 633 AGATGGCATCCGAGAGGACACATTGTATTGGCTGGATCAGAAGATTGTTCTCTATGGATG 692
Query 750 TGGAATGCTGATAAAGAAGCTTATCTTAATATGTTTTCGGGCCATAATCTAAATGTTACT 809
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 693 TGGAATGCTGATAAAGAAGCTTATCTTAATATGTTTTCGGGACATAATCTAAATGTCACT 752
Query 810 TGTGGTGACTTCACCCCTGACGGTAAACTAATTTGTACTGGCTCTGATGATGCAAGTTTG 869
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGCGGTGACTTTACCCCTGATGGTAAACTAATTTGTACTGGCTCTGATGATGCAAGTTTG 812
Query 870 ATAGTATGGAACCCAAAAACTTGTGAAAGCATTCATATTGT----TAAAGGTCAT-C-C- 922
||||| ||||||||||||||||| |||||||||||| || | |||| || | | |
Sbjct 813 ATAGTGTGGAACCCAAAAACTTGCGAAAGCATTCATGTT-TACACTAAA--TCTTTCGCC 869
Query 923 TTATC--ATACG-GAAGGATTGAC-ATGCT-TAGACATTAACTCGAACTCAAGTCTTGCT 977
|| | || || | | | || | | || | |||||||||||||||||||||||||||
Sbjct 870 TTTTTTGATTCGTGT-GAAATG-CTAACCTCT-GACATTAACTCGAACTCAAGTCTTGCT 926
Query 978 ATCAGTGGCTCAAAAGACGGTTCTGTTCACATTGTGAATATAGTCACCGGAAAGGTTGTG 1037
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 927 ATCAGTGGCTCAAAAGACGGTTCTGTTCACATTGTGAATATAGTAACCGGAAAGGTTGTG 986
Query 1038 AGCTCCTTGAATTCTCATACAGATTCAGTTGAATGTGTGAAGTTTTCACCAAGCTCCGCA 1097
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 987 AGCTCTTTGACTTCTCATACAGATTCAGTTGAGTGTGTGAAGTTTTCACCAAGCTCCGCA 1046
Query 1098 ACCATCCCTTTGGCTGCAACAGGTGGAATGGACAAGAAGCTTATAATCTGGGATCTGCAG 1157
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ACCATCCCGTTGGCTGCAACAGGTGGAATGGACAAGAAGCTTATAATCTGGGATCTGCAG 1106
Query 1158 CATTCCACTCCCAGGTTCATCTGCGAGCACGA-GGAAGGTGTGACATCTCTGACTTGGAT 1216
|||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||||||||
Sbjct 1107 CATTCCACTCCCAGATTCATCTGCGACCAC-ACGGAAGGTGTGACATCCCTGACTTGGAT 1165
Query 1217 AGGAACCTCCAAGTACTTAGCCACTGGCTGTGCCAATGGTACAGTGAGCATTTGGGACAG 1276
|||||| ||||| ||||| ||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct 1166 AGGAACATCCAAATACTTGGCCACGGGCTGCGCCGATGGTACAGTGAGCGTTTGGGACAG 1225
Query 1277 CTTATTAGGCAACTGCGTCCATACCTACCATGGTCACCAAGATGCGGTCCAGGCCATCTC 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CTTATTAGGCAACTGCGTCCATACCTACCATGGTCACCAAGATGCGGTCCAGGCCATCTC 1285
Query 1337 AGTCTCTACCAACACGGACTTCATTGTTTCGGTATCTGTCGATAACACTGCTAGAGTCTT 1396
||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1286 AGTCTCTACCAACGCGGACTTCATTGTTTCAGTCTCTGTCGATAACACTGCTCGAGTCTA 1345
Query 1397 TGAGTCATCTGAGTTCCAAAACAAAGTGACATAGGCAAGTGAGGAGAATACTTGCAGATA 1456
|||| |||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1346 TGAGACATCCGAGTTCCAAAACAAAGTGGCATAGGCAAGTGAGAAGAATACTTACAGATA 1405
Query 1457 CTATCCAGACATGT-T-GCTATCTGTGTTCGTTGTTGTG 1493
|| ||||||||||| | ||||||||||||||||||||||
Sbjct 1406 CTGTCCAGACATGTGTTGCTATCTGTGTTCGTTGTTGTG 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5