BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71850.1 Length=1632 Score E Sequences producing significant alignments: (Bits) Value Ahg476308 jgi|Araly1|476308|fgenesh2_kg.2__1438__AT1G71850.1 2431 0.0 > Ahg476308 jgi|Araly1|476308|fgenesh2_kg.2__1438__AT1G71850.1 Length=1617 Score = 2431 bits (1316), Expect = 0.0 Identities = 1523/1623 (94%), Gaps = 14/1623 (1%) Strand=Plus/Plus Query 4 GCTCCACATCAATGTCTTCGAAACACCATTGATGAGCCAAAACCCTCTTAAACCCTAAAA 63 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GCTTCACATGAATGTCTTTGAAACACCATTGATGAGCCAAAACCCTCTTAAAACCTAAAA 60 Query 64 AATCAAATCGCCGATGAAATCCATTTTCCGTTCCATTTCTATCCGCCGTCATTCCGGCCA 123 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 AACCAAATCGCCGATGAAATCCATTTTCCGTACCATTTCTATCCGCCGTCATTCCGGCCA 120 Query 124 CCGAACCTTCGCCGATACGTCGGCGGTGGAAGATACCTACAAATTCGTAAGAGACAGAGG 183 |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 121 CCGAACCTTCTCCGATA---CGGCGGTGGAAGATGTCTACAAATTCGTAAGAGACAGAGG 177 Query 184 ACTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGTATCAAAGACCT 243 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 178 TCTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGCATCAAGGACCT 237 Query 244 AATCAGATCGGAGCCAGCAAAATCAGTTCCGATCTCAGTTATCACCTC-ACAGAAAGATT 302 |||||||||||||| ||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 238 TATCAGATCGGAGCCTGCAAAATCAGTTCCGGTCTCAGTTATCACCACTA-AGAAAGATT 296 Query 303 CACTACGAGTTCCTCTTCGTCCAATCGAGTTCATAC-GTAGCTTCCCTTCCGTTTTCCAA 361 |||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||| Sbjct 297 CACTACGAGTTCCTCTCCGTCCAATCGAGTTCAT-CAGAAGCTTCCCTTCCGTTTTCCAA 355 Query 362 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 415 Query 422 AACCACGATGCCGATGAGCAATTGGTTTACGGTAGTGAGACTTATAAGCAAGGATTAGCT 481 |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 416 AACCTCGACGCCGATGAGCAATTGGTTTACGGTAGTGAGTCTTATAAGCAAGGATTAGCT 475 Query 482 GATAGGCTTTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTAGAGATTCTA 541 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 476 GATAGGCTCTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTGGAGATTCTT 535 Query 542 GATTTGTTGAAATGGGATTTAGGTTTACCTAAGGATTATGTTGAAACTATGGTACCTGAG 601 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 536 GATTTGTTGAAATGGGATTTAGGTTTACCTCAGGATTATGTTGAAACTATGGTACCTGAG 595 Query 602 TTTCCTGATTACTTTAGAGTTATCAAATCGAAGTTAAGAGGATGTAGTGGTGAGCTAGAG 661 ||||||||||| |||||||| ||||||||||||||| ||||||||||||| || ||||| Sbjct 596 TTTCCTGATTATTTTAGAGTAATCAAATCGAAGTTACGAGGATGTAGTGGCGAATTAGAG 655 Query 662 CTGGTTTGTTGGAGCAATGAGCATGCTGTATCTGTGTTGGAGAAGAAAGCTAGAACATTA 721 |||||||||||||||||||| |||||| |||||||||||||||||||||||||| || || Sbjct 656 CTGGTTTGTTGGAGCAATGATCATGCTATATCTGTGTTGGAGAAGAAAGCTAGAGCAATA 715 Query 722 CGTAAAGGAGAGTATACGAAAGGATCGGCGATTGCTTTTCCGATGAAGTTTTCGAATGGT 781 ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| |||||| Sbjct 716 GGTAAAGGAGAGTATAAGAAAGAATCCGCGATTGCTTTTCCTATGAAGTTTTCAAATGGT 775 Query 782 TTTGTGGTTGATAAGAAGATGAAGAAATGGATTGATGATTGGCAGAAGTTGCCGTATATT 841 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 776 TTTGTGGTTGATAAGAAGATGAAGAAATGGATCGATGATTGGCAGAAATTGCCATATATT 835 Query 842 TCTCCTTATGAGAATGCACTTCATCTGTCTGCGACTAGCGATGAGTCTGATAAGTGGGCG 901 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 836 TCTCCTTATGAGAATGCACTTCATCTGTCGGCGACTAGCGATGAGTCTGATAAGTGGGCG 895 Query 902 GCGGCTGTTTTGCACGAGATCATGAACCTTTTTGTGTCGAAGAAGGTTGAGAAAGATGCT 961 || ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| Sbjct 896 GCTGCTGTTTTGCATGAAATCATGAACCTTTTTGTGTCGAAGAAGATTGAGAAAGATGCC 955 Query 962 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGATCGAGGTTTAAGAGAGTTCTCCATAAT 1021 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 956 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGGTCAAGGTTTAAGAGAGTTCTCCATAAC 1015 Query 1022 CATCCTGGTATCTTTTACTTGTCTAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1081 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1016 CATCCAGGGATCTTTTACTTGTCAAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1075 Query 1082 GGTTACAAGAGGGGGATGTTGATAGAGAGTAATGAATTGGTGACAAGCAGGAACCGTTAC 1141 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1076 GGTTACAAGAGGGGGATGTTGATAGAGAGCAATGAATTGGTGACAAGCAGGAACCGTTAC 1135 Query 1142 ATGAAACTCATGAATACAGTTAAGAAAGATAACAAGGCAGTTTCTTCGAGCAGCAAGAAA 1201 ||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| | Sbjct 1136 ATGAAACTCATGAATACAGTTAAGAAAGAAAATAAGGCAGTTCCTTCTAGCAGCAAGAGA 1195 Query 1202 GAAGATAAGGGGAAAGTGGAAGGGGAAGTTTGTGATACTGATGCGAAGGCTGAGAATGAT 1261 ||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||| Sbjct 1196 GAAGATAAGGGGAAAGTGGAAGGCGCAGTTTGTGATACTAATGCAAAGGCTGAGAATGAT 1255 Query 1262 GACATTTCTGGTTCTGATGTCGAGGATGATCGTCAAGGAGACTTTGTTGATGATGACGAG 1321 ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1256 GACATTTCTGGTTCTGATGTCGAAAATGATCATCAAGGAGACTTTGTTGATGATGACGAG 1315 Query 1322 GACGATGATGAAGTGGATCAAAACCAG-GATCTGGAGCGTGGTCGTAGAAATTCAAGTCC 1380 ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||| Sbjct 1316 GACGATGATGAAGTGGATCAAAACCAGAG-TCTGAACCGTGGTCGTAGAAATTCAAGTCC 1374 Query 1381 AAGATCTGGTAGGAGGAGTTTTGGAAACTCAGGTTCAAGAGATAAGGCACAATCGAGGCG 1440 |||| | ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 1375 AAGAGCGGGTAGAAGGAGTTTTGGAAACTCGGGTTCAAGGGATAAGCCACAATCGAGGCG 1434 Query 1441 GAGCAAGATCAGTTTAAAGACTGAGAAGAAGAGGAGTCGGATGTATTAGAGACTTAATCC 1500 || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1435 GAACAAGATCAGTTTAAAGACCGAGAAGAAGAGGAGTCGGATGTATTAAAGACTTAATCC 1494 Query 1501 AACTTTACCGGTGGCTGCATTTTCAGCAGATTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1560 | |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1495 ATCTTTACTGGTGGCTGCATTTTCAGCGGTTTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1554 Query 1561 TCTATAGCTTGCCCGTTTCATTCTTACTTCTCAAGGGAGAA-----GAGTTTTTATAAAG 1615 ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1555 TCTATAGCTTGTCCGTTTCATTCTTACTTCTCAGGGGAGAACAATCGAGTTTTTATAAAG 1614 Query 1616 AGT 1618 ||| Sbjct 1615 AGT 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61172933470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5