BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71850.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476308 jgi|Araly1|476308|fgenesh2_kg.2__1438__AT1G71850.1 2431 0.0
> Ahg476308 jgi|Araly1|476308|fgenesh2_kg.2__1438__AT1G71850.1
Length=1617
Score = 2431 bits (1316), Expect = 0.0
Identities = 1523/1623 (94%), Gaps = 14/1623 (1%)
Strand=Plus/Plus
Query 4 GCTCCACATCAATGTCTTCGAAACACCATTGATGAGCCAAAACCCTCTTAAACCCTAAAA 63
||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GCTTCACATGAATGTCTTTGAAACACCATTGATGAGCCAAAACCCTCTTAAAACCTAAAA 60
Query 64 AATCAAATCGCCGATGAAATCCATTTTCCGTTCCATTTCTATCCGCCGTCATTCCGGCCA 123
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AACCAAATCGCCGATGAAATCCATTTTCCGTACCATTTCTATCCGCCGTCATTCCGGCCA 120
Query 124 CCGAACCTTCGCCGATACGTCGGCGGTGGAAGATACCTACAAATTCGTAAGAGACAGAGG 183
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCGAACCTTCTCCGATA---CGGCGGTGGAAGATGTCTACAAATTCGTAAGAGACAGAGG 177
Query 184 ACTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGTATCAAAGACCT 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 TCTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGCATCAAGGACCT 237
Query 244 AATCAGATCGGAGCCAGCAAAATCAGTTCCGATCTCAGTTATCACCTC-ACAGAAAGATT 302
|||||||||||||| ||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 238 TATCAGATCGGAGCCTGCAAAATCAGTTCCGGTCTCAGTTATCACCACTA-AGAAAGATT 296
Query 303 CACTACGAGTTCCTCTTCGTCCAATCGAGTTCATAC-GTAGCTTCCCTTCCGTTTTCCAA 361
|||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 297 CACTACGAGTTCCTCTCCGTCCAATCGAGTTCAT-CAGAAGCTTCCCTTCCGTTTTCCAA 355
Query 362 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 415
Query 422 AACCACGATGCCGATGAGCAATTGGTTTACGGTAGTGAGACTTATAAGCAAGGATTAGCT 481
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 AACCTCGACGCCGATGAGCAATTGGTTTACGGTAGTGAGTCTTATAAGCAAGGATTAGCT 475
Query 482 GATAGGCTTTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTAGAGATTCTA 541
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 GATAGGCTCTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTGGAGATTCTT 535
Query 542 GATTTGTTGAAATGGGATTTAGGTTTACCTAAGGATTATGTTGAAACTATGGTACCTGAG 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 536 GATTTGTTGAAATGGGATTTAGGTTTACCTCAGGATTATGTTGAAACTATGGTACCTGAG 595
Query 602 TTTCCTGATTACTTTAGAGTTATCAAATCGAAGTTAAGAGGATGTAGTGGTGAGCTAGAG 661
||||||||||| |||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 596 TTTCCTGATTATTTTAGAGTAATCAAATCGAAGTTACGAGGATGTAGTGGCGAATTAGAG 655
Query 662 CTGGTTTGTTGGAGCAATGAGCATGCTGTATCTGTGTTGGAGAAGAAAGCTAGAACATTA 721
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||
Sbjct 656 CTGGTTTGTTGGAGCAATGATCATGCTATATCTGTGTTGGAGAAGAAAGCTAGAGCAATA 715
Query 722 CGTAAAGGAGAGTATACGAAAGGATCGGCGATTGCTTTTCCGATGAAGTTTTCGAATGGT 781
||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| ||||||
Sbjct 716 GGTAAAGGAGAGTATAAGAAAGAATCCGCGATTGCTTTTCCTATGAAGTTTTCAAATGGT 775
Query 782 TTTGTGGTTGATAAGAAGATGAAGAAATGGATTGATGATTGGCAGAAGTTGCCGTATATT 841
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 776 TTTGTGGTTGATAAGAAGATGAAGAAATGGATCGATGATTGGCAGAAATTGCCATATATT 835
Query 842 TCTCCTTATGAGAATGCACTTCATCTGTCTGCGACTAGCGATGAGTCTGATAAGTGGGCG 901
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 836 TCTCCTTATGAGAATGCACTTCATCTGTCGGCGACTAGCGATGAGTCTGATAAGTGGGCG 895
Query 902 GCGGCTGTTTTGCACGAGATCATGAACCTTTTTGTGTCGAAGAAGGTTGAGAAAGATGCT 961
|| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 896 GCTGCTGTTTTGCATGAAATCATGAACCTTTTTGTGTCGAAGAAGATTGAGAAAGATGCC 955
Query 962 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGATCGAGGTTTAAGAGAGTTCTCCATAAT 1021
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 956 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGGTCAAGGTTTAAGAGAGTTCTCCATAAC 1015
Query 1022 CATCCTGGTATCTTTTACTTGTCTAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1081
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 CATCCAGGGATCTTTTACTTGTCAAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1075
Query 1082 GGTTACAAGAGGGGGATGTTGATAGAGAGTAATGAATTGGTGACAAGCAGGAACCGTTAC 1141
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1076 GGTTACAAGAGGGGGATGTTGATAGAGAGCAATGAATTGGTGACAAGCAGGAACCGTTAC 1135
Query 1142 ATGAAACTCATGAATACAGTTAAGAAAGATAACAAGGCAGTTTCTTCGAGCAGCAAGAAA 1201
||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| |
Sbjct 1136 ATGAAACTCATGAATACAGTTAAGAAAGAAAATAAGGCAGTTCCTTCTAGCAGCAAGAGA 1195
Query 1202 GAAGATAAGGGGAAAGTGGAAGGGGAAGTTTGTGATACTGATGCGAAGGCTGAGAATGAT 1261
||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||
Sbjct 1196 GAAGATAAGGGGAAAGTGGAAGGCGCAGTTTGTGATACTAATGCAAAGGCTGAGAATGAT 1255
Query 1262 GACATTTCTGGTTCTGATGTCGAGGATGATCGTCAAGGAGACTTTGTTGATGATGACGAG 1321
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1256 GACATTTCTGGTTCTGATGTCGAAAATGATCATCAAGGAGACTTTGTTGATGATGACGAG 1315
Query 1322 GACGATGATGAAGTGGATCAAAACCAG-GATCTGGAGCGTGGTCGTAGAAATTCAAGTCC 1380
||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||
Sbjct 1316 GACGATGATGAAGTGGATCAAAACCAGAG-TCTGAACCGTGGTCGTAGAAATTCAAGTCC 1374
Query 1381 AAGATCTGGTAGGAGGAGTTTTGGAAACTCAGGTTCAAGAGATAAGGCACAATCGAGGCG 1440
|||| | ||||| ||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1375 AAGAGCGGGTAGAAGGAGTTTTGGAAACTCGGGTTCAAGGGATAAGCCACAATCGAGGCG 1434
Query 1441 GAGCAAGATCAGTTTAAAGACTGAGAAGAAGAGGAGTCGGATGTATTAGAGACTTAATCC 1500
|| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1435 GAACAAGATCAGTTTAAAGACCGAGAAGAAGAGGAGTCGGATGTATTAAAGACTTAATCC 1494
Query 1501 AACTTTACCGGTGGCTGCATTTTCAGCAGATTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1560
| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1495 ATCTTTACTGGTGGCTGCATTTTCAGCGGTTTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1554
Query 1561 TCTATAGCTTGCCCGTTTCATTCTTACTTCTCAAGGGAGAA-----GAGTTTTTATAAAG 1615
||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1555 TCTATAGCTTGTCCGTTTCATTCTTACTTCTCAGGGGAGAACAATCGAGTTTTTATAAAG 1614
Query 1616 AGT 1618
|||
Sbjct 1615 AGT 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5