BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71860.1 Length=1510 Score E Sequences producing significant alignments: (Bits) Value Ahg339406 jgi|Araly1|339406|fgenesh1_pg.C_scaffold_2001505 1552 0.0 > Ahg339406 jgi|Araly1|339406|fgenesh1_pg.C_scaffold_2001505 Length=1029 Score = 1552 bits (840), Expect = 0.0 Identities = 969/1031 (94%), Gaps = 10/1031 (1%) Strand=Plus/Plus Query 156 ATGGCGACCGGTAAAACCT-CTTCCGCCGCGAATCTTTTCACTGGCTCGACGCGTTTTGA 214 |||||||| || | || || |||||||||| ||||||||||| |||||||||||| || Sbjct 1 ATGGCGACGGGGACAA-CTCCTTCCGCCGCTAATCTTTTCACCAACTCGACGCGTTTCGA 59 Query 215 TTTATCATCCGCTGATTCGCCTCCTTCAAAACTCTCTCTCTCCTCCGATCAGCTCAACCA 274 ||| ||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| || Sbjct 60 TTTCTCAGCCGCTGATGCGCCTCCTACAAAACTCTCTCTCTCCCCCGATCAGCTCAATCA 119 Query 275 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAAATCCTGACTCGATCGCTCA 334 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 120 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAGATCCCGACTCGATCGCTCA 179 Query 335 TGAGTTTACCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGCTGCTGCTAAACAGTAC 394 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 180 TGAGTTTTCCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGATGCTGCTAAATTGTAC 239 Query 395 AGTGGCTATGAACAGTGTCAATGTTGAGAAAAACAGATACAGTGATGTTGTTCCATTTGA 454 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 240 AGTGGCTATGAACAGTGTCAATATTGAGAAAAACAGATATAGTGATGTTGTTCCATTTGA 299 Query 455 CAAGAACAGGATTGTTCTGAATCCATGTAAAGAC------TCATCTGCAAAAGGATATGT 508 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CAAGAACAGGATTGTTCTGAATCCATGTAAAGACTATAGATCATCTGCAAAAGGATATGT 359 Query 509 GAATGCAAGCTTAATTAAGACGTCGGAGTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 568 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 GAATGCAAGCTTAATTAAGACGTCGGATTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 419 Query 569 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 479 Query 629 AATCATAGTGATGCTCACTCGATTGGTTGATAATAATAGGACTGTTAAATGCGGGGACTA 688 |||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 480 AATCATTGTCATGCTCACTCGATTGGTTGACAATAATCTGACTGTTAAATGCGGGGACTA 539 Query 689 TTTTCAAGACGAAGATGGACCTAGAGAATTTGGCAACATATCTCTTACAACAAAGTGGAT 748 |||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||| Sbjct 540 TTTTCAAGCCGAAGATGGACCTAGAGAATTTGGCAACATATCTGTTACGACAAAATGGAC 599 Query 749 AAAGACTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 808 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAAGTCTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 659 Query 809 GGATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAATGGCCTGATCATGGAGTTCC 868 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 660 GAATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAGTGGCCTGATCATGGAGTTCC 719 Query 869 CAAGGATACAGTGGCTGTCCGTGAAATTCTAAAAAGACTATATCAAGTACCACCTAGTCT 928 || |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 720 CAGGGATACTTTGGCTGTCCGTGAAATTCTAAAAAGATTATATCAAGTACCTCCTAGTCT 779 Query 929 CGGCCCAATCATTGTGCACTGCAGTGCAGGTATAGGAAGAACTGGAACATACTGTGCGAT 988 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 780 CGGCCCAATCATTGTGCACTGCAGTGCAGGCATAGGAAGAACCGGAACATACTGTGCCAT 839 Query 989 ACATAACACAATCCAAAGAATTCTTGCTGGCGATATGTCTGCGTTGGATCTTGCTAAAAC 1048 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 840 ACATAACACAATCCAGAGAATTCTTGCTGGCGATATGACTGCGTTGGATCTTGCTAAAAC 899 Query 1049 CGTGGCACTATTTCGCAAGC-AACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 1107 ||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 900 CGTGGCAATATTCCG-AAGCCAACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 958 Query 1108 TTTGCTACAATGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAAATGCTGGAA 1167 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 959 TTTGCTACACCGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAGATGCTGGAA 1018 Query 1168 CGAGTTCCTAA 1178 ||||||| ||| Sbjct 1019 CGAGTTCTTAA 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525923580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5