BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71860.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339406 jgi|Araly1|339406|fgenesh1_pg.C_scaffold_2001505 1552 0.0
> Ahg339406 jgi|Araly1|339406|fgenesh1_pg.C_scaffold_2001505
Length=1029
Score = 1552 bits (840), Expect = 0.0
Identities = 969/1031 (94%), Gaps = 10/1031 (1%)
Strand=Plus/Plus
Query 156 ATGGCGACCGGTAAAACCT-CTTCCGCCGCGAATCTTTTCACTGGCTCGACGCGTTTTGA 214
|||||||| || | || || |||||||||| ||||||||||| |||||||||||| ||
Sbjct 1 ATGGCGACGGGGACAA-CTCCTTCCGCCGCTAATCTTTTCACCAACTCGACGCGTTTCGA 59
Query 215 TTTATCATCCGCTGATTCGCCTCCTTCAAAACTCTCTCTCTCCTCCGATCAGCTCAACCA 274
||| ||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 60 TTTCTCAGCCGCTGATGCGCCTCCTACAAAACTCTCTCTCTCCCCCGATCAGCTCAATCA 119
Query 275 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAAATCCTGACTCGATCGCTCA 334
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 120 CTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAGATCCCGACTCGATCGCTCA 179
Query 335 TGAGTTTACCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGCTGCTGCTAAACAGTAC 394
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 180 TGAGTTTTCCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGATGCTGCTAAATTGTAC 239
Query 395 AGTGGCTATGAACAGTGTCAATGTTGAGAAAAACAGATACAGTGATGTTGTTCCATTTGA 454
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 240 AGTGGCTATGAACAGTGTCAATATTGAGAAAAACAGATATAGTGATGTTGTTCCATTTGA 299
Query 455 CAAGAACAGGATTGTTCTGAATCCATGTAAAGAC------TCATCTGCAAAAGGATATGT 508
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CAAGAACAGGATTGTTCTGAATCCATGTAAAGACTATAGATCATCTGCAAAAGGATATGT 359
Query 509 GAATGCAAGCTTAATTAAGACGTCGGAGTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 568
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GAATGCAAGCTTAATTAAGACGTCGGATTCTGAGAGTATTTCTCAGTTCATAGCTACGCA 419
Query 569 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCC 479
Query 629 AATCATAGTGATGCTCACTCGATTGGTTGATAATAATAGGACTGTTAAATGCGGGGACTA 688
|||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 480 AATCATTGTCATGCTCACTCGATTGGTTGACAATAATCTGACTGTTAAATGCGGGGACTA 539
Query 689 TTTTCAAGACGAAGATGGACCTAGAGAATTTGGCAACATATCTCTTACAACAAAGTGGAT 748
|||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 540 TTTTCAAGCCGAAGATGGACCTAGAGAATTTGGCAACATATCTGTTACGACAAAATGGAC 599
Query 749 AAAGACTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 808
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAGTCTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGA 659
Query 809 GGATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAATGGCCTGATCATGGAGTTCC 868
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 GAATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAGTGGCCTGATCATGGAGTTCC 719
Query 869 CAAGGATACAGTGGCTGTCCGTGAAATTCTAAAAAGACTATATCAAGTACCACCTAGTCT 928
|| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 720 CAGGGATACTTTGGCTGTCCGTGAAATTCTAAAAAGATTATATCAAGTACCTCCTAGTCT 779
Query 929 CGGCCCAATCATTGTGCACTGCAGTGCAGGTATAGGAAGAACTGGAACATACTGTGCGAT 988
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 780 CGGCCCAATCATTGTGCACTGCAGTGCAGGCATAGGAAGAACCGGAACATACTGTGCCAT 839
Query 989 ACATAACACAATCCAAAGAATTCTTGCTGGCGATATGTCTGCGTTGGATCTTGCTAAAAC 1048
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 ACATAACACAATCCAGAGAATTCTTGCTGGCGATATGACTGCGTTGGATCTTGCTAAAAC 899
Query 1049 CGTGGCACTATTTCGCAAGC-AACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 1107
||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGTGGCAATATTCCG-AAGCCAACGCATTGGCATGGTTCAAACCATGGATCAATACTTCT 958
Query 1108 TTTGCTACAATGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAAATGCTGGAA 1167
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TTTGCTACACCGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAGATGCTGGAA 1018
Query 1168 CGAGTTCCTAA 1178
||||||| |||
Sbjct 1019 CGAGTTCTTAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5