BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71865.1
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476312 jgi|Araly1|476312|fgenesh2_kg.2__1442__AT1G71865.1 811 0.0
> Ahg476312 jgi|Araly1|476312|fgenesh2_kg.2__1442__AT1G71865.1
Length=591
Score = 811 bits (439), Expect = 0.0
Identities = 547/596 (92%), Gaps = 20/596 (3%)
Strand=Plus/Plus
Query 39 GAATTCGAAATCAAAGTAAGC--A-A---TCATCGTCACTTCTTCGAATACCCCTACTCA 92
||||||||||| ||||||||| | | |||| |||||||||||| |||||| ||||||
Sbjct 1 GAATTCGAAATTAAAGTAAGCAAACATCGTCATTGTCACTTCTTCGGATACCCATACTCA 60
Query 93 AATCGAGAATCACCCAGAGGATTTCTAAAGAGAAAGTTTGCTTGTGACTGAAAACCCGCA 152
| |||| |||||||||||||| |||||||||| |||| ||||||||||| |||||||| |
Sbjct 61 ATTCGATAATCACCCAGAGGAGTTCTAAAGAGCAAGTGTGCTTGTGACTCAAAACCCGTA 120
Query 153 TACAAGATAATCACCGGGGC----aaa-aaaaTGAGTTTTGCATGCCTCGTGTGCCATAG 207
||||||||| |||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 121 TACAAGATACTCACTGAGGCAAAAAAATAAAATGAGTTTTGCATGCCTCGTGTGCCATAG 180
Query 208 TGTAGAGAGCCCATCCCACTCATTTAGAAGCTACTCTGTTTCTAGCTCAGACAACGAGGG 267
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTAGAAAGCCCATCCCACTCATTTAGAAGCTACTCTGTTTCTAGCTCAGACAACGAGGG 240
Query 268 AAGATGCTCTGTGATTGCAAGCTGCCTCACAAGGAAATCACTCATTCAAGCTGCAAGATC 327
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGATGCTCTGTGATTGCGAGCTGCCTCACAAGGAAATCACTCATTCAAGCTGCAAGATC 300
Query 328 GAACCCTTTCCCTGCATCGTCATCAAAGGTAACCCCACAACCCAATTTCCAAGCAGGTGA 387
||| |||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACGCTTTCCCTGCTTCTTCCTCAAAGGTAACCCCACAACCCAATTTCCAAGCAGGTGA 360
Query 388 AGGAGCCTCACCACGGTTAGTACGAAGCCGTGCAGTGAGAAGAGACATTGTCAGAGACTG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAGCCTCACCACGGTTAGTACGAAGCCGTGCAGTGAGAAGAGACATTGTCAGAGACTG 420
Query 448 GAACTTCAACGAAATTGAGACAGAGCTTTGAAATCAGATCTGACTCTTCTCTTAGGAATA 507
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct 421 GAACTTCAACGAAATCGAGACAGAGCTTT-AAATCAGATCCGACTCTTCTCTTAGGA-TA 478
Query 508 GTATTAGTTTGTTCATCAACTG-T-T-CTT-TTGTACCTCGTGTTCAAAGTTTTGTATTT 563
|||||||||||||||||| ||| | | ||| || | |||||||||||| |||||||||||
Sbjct 479 GTATTAGTTTGTTCATCATCTGATCTTCTTCTTTTTCCTCGTGTTCAAGGTTTTGTATTT 538
Query 564 GGCTTAGAAGAATGCTTTTACAAACCAATAATCTAATATTTTCCTGGCCGTTTATT 619
||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 539 GGCTTAGAA---TGCTTTTACAAACAAATAATCTAATATTTTGCTGGCCGTTTATT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22759381449
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5