BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71870.1 Length=1533 Score E Sequences producing significant alignments: (Bits) Value Ahg339407 jgi|Araly1|339407|fgenesh1_pg.C_scaffold_2001506 2244 0.0 > Ahg339407 jgi|Araly1|339407|fgenesh1_pg.C_scaffold_2001506 Length=1530 Score = 2244 bits (1215), Expect = 0.0 Identities = 1416/1511 (94%), Gaps = 22/1511 (1%) Strand=Plus/Plus Query 1 ATGGAAGACAAAATC-CAGTCAGATGATTTCACTTCCCATAAAAACCCAACTCTTCCTCA 59 |||| |||||||| | || |||||||| |||| ||||||||||||||||||||||||||| Sbjct 1 ATGGCAGACAAAA-CTCAATCAGATGAATTCATTTCCCATAAAAACCCAACTCTTCCTCA 59 Query 60 AGTCATTGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGTTATAGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119 Query 120 TCTTGTCTACGTGCGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGTCTCGGTAGCCTCGA 179 |||||||||||| |||||||||||||||||||||||||||||||| || || ||||| || Sbjct 120 TCTTGTCTACGTACGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGGCTTGGCAGCCTTGA 179 Query 180 GTTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGATACTCTGTTATGGT 239 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 180 GCTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGCTACTCTGTTCTCGT 239 Query 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299 Query 300 TCTCCTCACGCTCTCTCTTCACCGTATGGTCGTGATTCTCTTAATGGCCTCTCTGCCCAT 359 |||||| ||||||||||| || ||||||||||||||||||||||| |||||| | ||||| Sbjct 300 TCTCCTTACGCTCTCTCTCCATCGTATGGTCGTGATTCTCTTAATCGCCTCTGTTCCCAT 359 Query 360 AAGCCTCCTTTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCGGAGAT 419 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 TAGCCTCCTCTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCAGAGAT 419 Query 420 AACCGCTACAGCGGCTGAATATTGTCTCTACGCGCTTCCTGATCTTTTGACCAATACTCT 479 ||| ||||| || ||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 420 AACGGCTACGGCCGCTGAGTATTGTCTCTACGCCCTTCCTGATCTTTTGAACAATACTCT 479 Query 480 CCTTCAGCCGTTACGTGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCTTCAGCCGTTAAGAGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539 Query 540 TACGCTAGCAGCAGTGGCGTTCCATGTGCCATTGAATTATTGGCTTGTGATGGTGAAGCA 599 |||| ||||||| |||||||| || ||||| |||||||||||||||||||||||||||| Sbjct 540 TACGTTAGCAGCGGTGGCGTTTCACGTGCCGTTGAATTATTGGCTTGTGATGGTGAAGCG 599 Query 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659 Query 660 TTTGGTTGGTTATGTTTGGGTTAGTGGGATGTTGCAGAAGAGAGTGAGTGGTGATGGTGA 719 ||||||||| ||||||||| ||||||||||||||||| | ||| | |||| | Sbjct 660 TTTGGTTGGATATGTTTGGTTTAGTGGGATGTTGCAG-A-AGA--CA---GTGA----G- 707 Query 720 TGGTGGGTCTACTACGATGGTGGCGGTGGTGGCTCAGTCGTCGTCTGTGA-TGGAGTTGG 778 ||||||| | ||||| ||||||| ||||||||||||||||||||| | ||||||||| Sbjct 708 TGGTGGG--T-CTACGGTGGTGGC---GGTGGCTCAGTCGTCGTCTGT-ATTGGAGTTGG 760 Query 779 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 761 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 820 Query 839 AATGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAGCTTG 898 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 821 AGTGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAACTTG 880 Query 899 CTGTGGCTGCCACTGGGATTTTGATTCAGACTACTAGTCTTATGTATACGGTTCCTATGG 958 | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 881 CGGTGGCTGCCACTGGGATTTTGATTCAGACTACGAGTCTTATGTATACTGTTCCTATGG 940 Query 959 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGGAACGAGCTCGGTGCAGGTAGACCTTACA 1018 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 941 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGAAACGAGCTCGGTGCAGGTAGACCGTACA 1000 Query 1019 AGGCCAGACTAGCCGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1078 | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 AAGCGAGACTAGCAGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1060 Query 1079 TGGCTTGGACGGTTATTCTAAAAGAGCGTTGGGCTGGACTATTCACTGGCTATGAGCCAC 1138 || ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1061 TGACTTGGACGGTTGTTCTTAAAGAGCGTTGGGCTGGACTATTCACTGGCTACGAGCCAC 1120 Query 1139 TCAAGGTCTTGGTTGCTTCGGTTATGCCAATTGTCGGGCTATGCGAGCTAGGGAATTGTC 1198 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1121 TCAAGGTATTGGTTGCTTCGGTTATGCCAATCGTCGGGCTATGCGAGCTAGGGAATTGCC 1180 Query 1199 CACAGACCACGGGCTGCGGGATTCTTAGAGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1258 | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1181 CGCAAACCACGGGCTGCGGGATTCTTAGGGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1240 Query 1259 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCAGTTGGACTAGCGTTTTGGT 1318 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1241 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCGGTTGGACTAGCGTTTTGGT 1300 Query 1319 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGGTTGCTTTCAGCTCAAGCGGCTTGCGTGG 1378 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1301 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGATTGCTTTCGGCTCAAGCGGCTTGCGTGG 1360 Query 1379 TTTCGATATTGTATGCGGTTTTGGCGAGGACGGATTGGGAAGGGGAAGCCGTGAAGGCAA 1438 ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| Sbjct 1361 TTTCGATATTGTATGCGGTTTTGGCAAGGACTGATTGGGAAGGGGAAGCAGTGAGGGCAA 1420 Query 1439 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGACAAGATGAAGAGTCTTCATTGTTAT 1498 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | Sbjct 1421 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGAAAAGATGAAGAGTCGTCATTGTTGT 1480 Query 1499 TGTTGGATGAT 1509 ||||||||||| Sbjct 1481 TGTTGGATGAT 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57401999215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5