BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71870.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339407 jgi|Araly1|339407|fgenesh1_pg.C_scaffold_2001506 2244 0.0
> Ahg339407 jgi|Araly1|339407|fgenesh1_pg.C_scaffold_2001506
Length=1530
Score = 2244 bits (1215), Expect = 0.0
Identities = 1416/1511 (94%), Gaps = 22/1511 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGACAAAATC-CAGTCAGATGATTTCACTTCCCATAAAAACCCAACTCTTCCTCA 59
|||| |||||||| | || |||||||| |||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAGACAAAA-CTCAATCAGATGAATTCATTTCCCATAAAAACCCAACTCTTCCTCA 59
Query 60 AGTCATTGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTTATAGAAGAGCTAAAAGAGCTCTGGGCTATGGTTTTACCAATCACAGCAATGAACTG 119
Query 120 TCTTGTCTACGTGCGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGTCTCGGTAGCCTCGA 179
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 120 TCTTGTCTACGTACGCGCCGTCGTGTCTGTTCTCTTCCTCGGCCGGCTTGGCAGCCTTGA 179
Query 180 GTTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGATACTCTGTTATGGT 239
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 180 GCTAGCCGGAGGAGCTCTCTCCATCGGATTCACCAACATCACAGGCTACTCTGTTCTCGT 239
Query 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGACTCGCCTCGGGTCTCGAGCCAGTGTGTAGCCAAGCCTACGGTAGCAAAAACTGGGA 299
Query 300 TCTCCTCACGCTCTCTCTTCACCGTATGGTCGTGATTCTCTTAATGGCCTCTCTGCCCAT 359
|||||| ||||||||||| || ||||||||||||||||||||||| |||||| | |||||
Sbjct 300 TCTCCTTACGCTCTCTCTCCATCGTATGGTCGTGATTCTCTTAATCGCCTCTGTTCCCAT 359
Query 360 AAGCCTCCTTTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCGGAGAT 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TAGCCTCCTCTGGATCAACCTTGGACCCATCATGCTTTTCATGGGTCAAAACCCAGAGAT 419
Query 420 AACCGCTACAGCGGCTGAATATTGTCTCTACGCGCTTCCTGATCTTTTGACCAATACTCT 479
||| ||||| || ||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 420 AACGGCTACGGCCGCTGAGTATTGTCTCTACGCCCTTCCTGATCTTTTGAACAATACTCT 479
Query 480 CCTTCAGCCGTTACGTGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTTCAGCCGTTAAGAGTTTATCTAAGGTCGCAGCGAGTGACGAAACCGATGATGTGGTG 539
Query 540 TACGCTAGCAGCAGTGGCGTTCCATGTGCCATTGAATTATTGGCTTGTGATGGTGAAGCA 599
|||| ||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 540 TACGTTAGCAGCGGTGGCGTTTCACGTGCCGTTGAATTATTGGCTTGTGATGGTGAAGCG 599
Query 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGGGTGTTCCTGGTGTGGCTATTGCGTCTGTTGTGACGAATTTGATCATGGTTGTGCT 659
Query 660 TTTGGTTGGTTATGTTTGGGTTAGTGGGATGTTGCAGAAGAGAGTGAGTGGTGATGGTGA 719
||||||||| ||||||||| ||||||||||||||||| | ||| | |||| |
Sbjct 660 TTTGGTTGGATATGTTTGGTTTAGTGGGATGTTGCAG-A-AGA--CA---GTGA----G- 707
Query 720 TGGTGGGTCTACTACGATGGTGGCGGTGGTGGCTCAGTCGTCGTCTGTGA-TGGAGTTGG 778
||||||| | ||||| ||||||| ||||||||||||||||||||| | |||||||||
Sbjct 708 TGGTGGG--T-CTACGGTGGTGGC---GGTGGCTCAGTCGTCGTCTGT-ATTGGAGTTGG 760
Query 779 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TTGGAGGGTTGGGACCGTTGATGAGAGTGGCGGTTCCGAGTTGTTTGGGGATATGTTTGG 820
Query 839 AATGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAGCTTG 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 821 AGTGGTGGTGGTATGAGATTGTGATTGTGATGGGTGGTTACTTGGAGAATCCTAAACTTG 880
Query 899 CTGTGGCTGCCACTGGGATTTTGATTCAGACTACTAGTCTTATGTATACGGTTCCTATGG 958
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 881 CGGTGGCTGCCACTGGGATTTTGATTCAGACTACGAGTCTTATGTATACTGTTCCTATGG 940
Query 959 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGGAACGAGCTCGGTGCAGGTAGACCTTACA 1018
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 941 CTTTAGCTGGATGCGTCTCTGCTCGGGTTGGAAACGAGCTCGGTGCAGGTAGACCGTACA 1000
Query 1019 AGGCCAGACTAGCCGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1078
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AAGCGAGACTAGCAGCGAACGTGGCTCTAGCTTGCGCGTTTGTAGTAGGAGCATTGAATG 1060
Query 1079 TGGCTTGGACGGTTATTCTAAAAGAGCGTTGGGCTGGACTATTCACTGGCTATGAGCCAC 1138
|| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1061 TGACTTGGACGGTTGTTCTTAAAGAGCGTTGGGCTGGACTATTCACTGGCTACGAGCCAC 1120
Query 1139 TCAAGGTCTTGGTTGCTTCGGTTATGCCAATTGTCGGGCTATGCGAGCTAGGGAATTGTC 1198
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1121 TCAAGGTATTGGTTGCTTCGGTTATGCCAATCGTCGGGCTATGCGAGCTAGGGAATTGCC 1180
Query 1199 CACAGACCACGGGCTGCGGGATTCTTAGAGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1258
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1181 CGCAAACCACGGGCTGCGGGATTCTTAGGGGGACAGGTCGGCCTGCGGTTGGGGCACATG 1240
Query 1259 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCAGTTGGACTAGCGTTTTGGT 1318
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1241 TGAATCTCGGGTCGTTTTATTTCGTTGGGACTCCCGTGGCGGTTGGACTAGCGTTTTGGT 1300
Query 1319 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGGTTGCTTTCAGCTCAAGCGGCTTGCGTGG 1378
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1301 TGAAAATTGGGTTTAGTGGGTTGTGGTTTGGATTGCTTTCGGCTCAAGCGGCTTGCGTGG 1360
Query 1379 TTTCGATATTGTATGCGGTTTTGGCGAGGACGGATTGGGAAGGGGAAGCCGTGAAGGCAA 1438
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||
Sbjct 1361 TTTCGATATTGTATGCGGTTTTGGCAAGGACTGATTGGGAAGGGGAAGCAGTGAGGGCAA 1420
Query 1439 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGACAAGATGAAGAGTCTTCATTGTTAT 1498
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 1421 TGAGACTGACGAGTTTGGAGATGAGGAAAGTTGGAAAAGATGAAGAGTCGTCATTGTTGT 1480
Query 1499 TGTTGGATGAT 1509
|||||||||||
Sbjct 1481 TGTTGGATGAT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5