BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71890.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1 2459 0.0
Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1 2453 0.0
Ahg926547 jgi|Araly1|926547|scaffold_202108.1 1533 0.0
Ahg472513 jgi|Araly1|472513|fgenesh2_kg.1__2467__AT1G22710.1 713 0.0
> Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1
Length=1634
Score = 2459 bits (1331), Expect = 0.0
Identities = 1505/1589 (95%), Gaps = 11/1589 (1%)
Strand=Plus/Plus
Query 21 TTTTCTTTTTGTCTGCTCGTTTTTCTTTTCATAATGGGAGCCTTGGAAGCAGAAAGAGCC 80
||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTTTTTGTCTGTTCG-TGTT-TTTTCATAATGGGAGCCTTGGAAGCAGAAAGAGCC 58
Query 81 GCCAACAATGCTACGGCGTTAGAGACACAGTCGTCACCGGAAGATCTCGGTCAACCATCT 140
|||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 59 GCCAACGATGCGGCGGCGTTAGAGACACAGTCTTCATCGGAAGATCTCGGTCAACCATCT 118
Query 141 CCTCTGCGTAAGATCATCTCCGTCGCTTCAATCGCCGCCGGTGTACAGTTCGGGTGGGCC 200
|| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 119 CCGCTGCGTAAAATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGCC 178
Query 201 TTACAGCTTTCTCTTCTGACTCCTTACATACAACTCCTCGGGATCCCTCACAAATGGTCG 260
|||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 179 TTACAGCTCTCTCTTCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCG 238
Query 261 TCTTACATGTGGCTTTGTGGTCCTATCTCCGGCATGATTGTTCAACCGATCGTCGGTTAC 320
|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 239 TCTTACATGTGGCTCTGTGGTCCTATCTCCGGCATGCTTGTTCAACCAATCGTCGGTTAC 298
Query 321 CACAGTGACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATTGCCGCCGGAGTC 380
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 299 CACAGTGACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCC 358
Query 381 GCACTCGTAGCCGTCTCGGTTTTCCTTATCGGATTCGCGGCGGATATGGGACATAGTTTT 440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTACTCGTAGCCGTCTCGGTTTTCCTTATCGGATTCGCGGCGGATATGGGACATAGTTTT 418
Query 441 GGAGATAAACTCGAGAACAAGGTAAGGACTCGAGCCATTATAATCTTCCTAACCGGGTTT 500
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GGAGATAAACTCGAGAACAAGGTAAGGACTCGAGCCATTATAATCTTCCTTACCGGGTTT 478
Query 501 TGGTTCCTCGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGAT 560
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGGTCCTTGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGAT 538
Query 561 TTAGCCGCCGGAGACGCTaaaaaaaCGCGAGTCGCAAACGCGTGTTTCTCCTTCTTTATG 620
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 539 TTAGCCGCCGGAGACGCTAAAAAAACGCGAGTCGCAAACGCATGTTTCTCTTTTTTTATG 598
Query 621 GCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTT 658
Query 681 CCTTTCACAATGACAAAAGCTTGCGACATCTATTGTGCGAATCTCAAGACTTGTTTCTTC 740
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 659 CCTTTCACAATGACAAAAGCTTGCGATGTCTATTGCGCGAATCTCAAGACTTGTTTCTTC 718
Query 741 TTATCCATCACTCTCCTCCTTATCGTCACATTCTCGTCTCTATGGTACGTTAAAGACAAA 800
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 719 CTATCCATCACTCTCCTCCTTATCCTCACCTTCTCGTCTCTATGGTACGTTAAAGACAAA 778
Query 801 CAATGGTCTCCACCTCAAGGAGACAAGGAGGAGAAAACATCAAGTCtttttttCTTTGGA 860
||||||||||| || || ||||| || | ||||||||||||||||||||||||||||||
Sbjct 779 CAATGGTCTCCGCCACATGGAGAGAA--A-GAGAAAACATCAAGTCTTTTTTTCTTTGGA 835
Query 861 GAAATCTTTGGAGCTGTTAGACACATGAAACGTCCCATGGT-GATGCTTCTAATTGTCAC 919
||||||||||||||||| ||| ||||||||||||||| || |||||||||||| |||||
Sbjct 836 GAAATCTTTGGAGCTGTCAGAGTCATGAAACGTCCCAT-GTGGATGCTTCTAATGGTCAC 894
Query 920 GGTCATTAATTGGATCGCTTGGTTTCCATTTATTTTGTATGATACCGATTGGATGGGTCG 979
||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 895 GGTTATTAATTGGATCGCTTGGTTTCCGTTTCTTTTGTACGATACCGATTGGATGGGTCG 954
Query 980 TGAAGTGTACGGTGGAAACTCAGATGGAGATGAACGATCGAAGAAACTTTACGACCAAGG 1039
|||||||||||||||||| ||||||||| |||| | | | ||||||||||||||||||||
Sbjct 955 TGAAGTGTACGGTGGAAATTCAGATGGAAATGAGCAAGCCAAGAAACTTTACGACCAAGG 1014
Query 1040 AGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCTATACTTCTTGGTTTCGTGTCACT 1099
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1015 AGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCAATACTTCTTGGTTTCGTGTCACT 1074
Query 1100 TGGTGTTGAATCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGGATGTGTGAA 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGGTGTTGAATCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGGATGTGTGAA 1134
Query 1160 TTTCATACTCGCCATAGGTTTGGCCATGACGGTTCTTGTTACTAAATCGGCTGAGCATCA 1219
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||
Sbjct 1135 TTTCATACTCGCCATAGGTTTGGCCATGACGGTTCTTGTTACGCAATCCGCTGATAACCA 1194
Query 1220 CCGGGAAATCGCCGGTCCTTTAG-CCGGACCGAGCAGTGGTATTAAAGCCGGAGTATTTA 1278
|||| ||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCGGAAAACCGCCGGTGCTTT-GTCCGGACCGAGCAGTGGTATTAAAGCCGGAGTATTTA 1253
Query 1279 GTCTCTTTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTATTCCATTTGCACTAG 1338
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 GTCTCTTTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTGTTCCATTTGCACTAG 1313
Query 1339 CGTCCATTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTCAT-TAGGCGTTTTAAAT 1397
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1314 CGTCCATTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTC-TCTAGGCGTTTTAAAT 1372
Query 1398 ATAGCGATTTGTATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAA 1457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATAGCGATTTGTATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAC 1432
Query 1458 TTCGGCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCAATTGCCGCGGCGGTTAGTGGA 1517
|||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||
Sbjct 1433 TTCGGCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGA 1492
Query 1518 GTCTTAGCGTTAACCGTTTTACCTTCACCGCCTCCGGACGCACCAGCCATGTCAGGGGCT 1577
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 GTGTTAGCGTTAACCGTTCTACCTTCACCGCCTGCGGACGCACCAGCCATGTCAGGGGCT 1552
Query 1578 ATGGGATTCCATTAGTTAACTAGTTTTTA 1606
||||||||||||||||| |||||| ||||
Sbjct 1553 ATGGGATTCCATTAGTTTACTAGTCTTTA 1581
> Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1
Length=1634
Score = 2453 bits (1328), Expect = 0.0
Identities = 1504/1589 (95%), Gaps = 11/1589 (1%)
Strand=Plus/Plus
Query 21 TTTTCTTTTTGTCTGCTCGTTTTTCTTTTCATAATGGGAGCCTTGGAAGCAGAAAGAGCC 80
||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTTTTTGTCTGTTCG-TGTT-TTTTCATAATGGGAGCCTTGGAAGCAGAAAGAGCC 58
Query 81 GCCAACAATGCTACGGCGTTAGAGACACAGTCGTCACCGGAAGATCTCGGTCAACCATCT 140
|||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 59 GCCAACGATGCGGCGGCGTTAGAGACACAGTCTTCATCGGAAGATCTCGGTCAACCATCT 118
Query 141 CCTCTGCGTAAGATCATCTCCGTCGCTTCAATCGCCGCCGGTGTACAGTTCGGGTGGGCC 200
|| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 119 CCGCTGCGTAAAATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGCC 178
Query 201 TTACAGCTTTCTCTTCTGACTCCTTACATACAACTCCTCGGGATCCCTCACAAATGGTCG 260
|||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 179 TTACAGCTCTCTCTTCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCG 238
Query 261 TCTTACATGTGGCTTTGTGGTCCTATCTCCGGCATGATTGTTCAACCGATCGTCGGTTAC 320
|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 239 TCTTACATGTGGCTCTGTGGTCCTATCTCCGGCATGCTTGTTCAACCAATCGTCGGTTAC 298
Query 321 CACAGTGACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATTGCCGCCGGAGTC 380
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 299 CACAGTGACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCC 358
Query 381 GCACTCGTAGCCGTCTCGGTTTTCCTTATCGGATTCGCGGCGGATATGGGACATAGTTTT 440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTACTCGTAGCCGTCTCGGTTTTCCTTATCGGATTCGCGGCGGATATGGGACATAGTTTT 418
Query 441 GGAGATAAACTCGAGAACAAGGTAAGGACTCGAGCCATTATAATCTTCCTAACCGGGTTT 500
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GGAGATAAACTCGAGAACAAGGTAAGGACTCGAGCCATTATAATCTTCCTTACCGGGTTT 478
Query 501 TGGTTCCTCGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGAT 560
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGGTCCTTGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGAT 538
Query 561 TTAGCCGCCGGAGACGCTaaaaaaaCGCGAGTCGCAAACGCGTGTTTCTCCTTCTTTATG 620
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 539 TTAGCCGCCGGAGACGCTAAAAAAACGCGAGTCGCAAACGCATGTTTCTCTTTTTTTATG 598
Query 621 GCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTT 658
Query 681 CCTTTCACAATGACAAAAGCTTGCGACATCTATTGTGCGAATCTCAAGACTTGTTTCTTC 740
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 659 CCTTTCACAATGACAAAAGCTTGCGATGTCTATTGCGCGAATCTCAAGACTTGTTTCTTC 718
Query 741 TTATCCATCACTCTCCTCCTTATCGTCACATTCTCGTCTCTATGGTACGTTAAAGACAAA 800
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 719 CTATCCATCACTCTCCTCCTTATCCTCACCTTCTCGTCTCTATGGTACGTTAAAGACAAA 778
Query 801 CAATGGTCTCCACCTCAAGGAGACAAGGAGGAGAAAACATCAAGTCtttttttCTTTGGA 860
||||||||||| || || ||||| || | ||||||||||||||| ||||||||||||||
Sbjct 779 CAATGGTCTCCGCCACATGGAGAGAA--A-GAGAAAACATCAAGTGTTTTTTTCTTTGGA 835
Query 861 GAAATCTTTGGAGCTGTTAGACACATGAAACGTCCCATGGT-GATGCTTCTAATTGTCAC 919
||||||||||||||||| ||| ||||||||||||||| || |||||||||||| |||||
Sbjct 836 GAAATCTTTGGAGCTGTCAGAGTCATGAAACGTCCCAT-GTGGATGCTTCTAATGGTCAC 894
Query 920 GGTCATTAATTGGATCGCTTGGTTTCCATTTATTTTGTATGATACCGATTGGATGGGTCG 979
||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 895 GGTTATTAATTGGATCGCTTGGTTTCCGTTTCTTTTGTACGATACCGATTGGATGGGTCG 954
Query 980 TGAAGTGTACGGTGGAAACTCAGATGGAGATGAACGATCGAAGAAACTTTACGACCAAGG 1039
|||||||||||||||||| ||||||||| |||| | | | ||||||||||||||||||||
Sbjct 955 TGAAGTGTACGGTGGAAATTCAGATGGAAATGAGCAAGCCAAGAAACTTTACGACCAAGG 1014
Query 1040 AGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCTATACTTCTTGGTTTCGTGTCACT 1099
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1015 AGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCAATACTTCTTGGTTTCGTGTCACT 1074
Query 1100 TGGTGTTGAATCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGGATGTGTGAA 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGGTGTTGAATCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGGATGTGTGAA 1134
Query 1160 TTTCATACTCGCCATAGGTTTGGCCATGACGGTTCTTGTTACTAAATCGGCTGAGCATCA 1219
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||
Sbjct 1135 TTTCATACTCGCCATAGGTTTGGCCATGACGGTTCTTGTTACGCAATCCGCTGATAACCA 1194
Query 1220 CCGGGAAATCGCCGGTCCTTTAG-CCGGACCGAGCAGTGGTATTAAAGCCGGAGTATTTA 1278
|||| ||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCGGAAAACCGCCGGTGCTTT-GTCCGGACCGAGCAGTGGTATTAAAGCCGGAGTATTTA 1253
Query 1279 GTCTCTTTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTATTCCATTTGCACTAG 1338
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 GTCTCTTTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTGTTCCATTTGCACTAG 1313
Query 1339 CGTCCATTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTCAT-TAGGCGTTTTAAAT 1397
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1314 CGTCCATTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTC-TCTAGGCGTTTTAAAT 1372
Query 1398 ATAGCGATTTGTATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAA 1457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATAGCGATTTGTATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAC 1432
Query 1458 TTCGGCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCAATTGCCGCGGCGGTTAGTGGA 1517
|||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||
Sbjct 1433 TTCGGCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGA 1492
Query 1518 GTCTTAGCGTTAACCGTTTTACCTTCACCGCCTCCGGACGCACCAGCCATGTCAGGGGCT 1577
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 GTGTTAGCGTTAACCGTTCTACCTTCACCGCCTGCGGACGCACCAGCCATGTCAGGGGCT 1552
Query 1578 ATGGGATTCCATTAGTTAACTAGTTTTTA 1606
||||||||||||||||| |||||| ||||
Sbjct 1553 ATGGGATTCCATTAGTTTACTAGTCTTTA 1581
> Ahg926547 jgi|Araly1|926547|scaffold_202108.1
Length=1586
Score = 1533 bits (830), Expect = 0.0
Identities = 1354/1600 (85%), Gaps = 63/1600 (4%)
Strand=Plus/Plus
Query 40 TTTTTCTT-TTCATAATGGGAGCCTTGGAAGCAGAAAGAGCC-GCCAACA-ATGCTACGG 96
|||||||| | |||||||||||||| ||| |||||| | || | || | |||| |||
Sbjct 10 TTTTTCTTCCTGATAATGGGAGCCTTTGAAACAGAAA-AACCAACTAA-AGATGCGGCGG 67
Query 97 CGT-TAGAGACACAGTCGTCACCGGAAGATCTCGGTCAACCATCTCCTCTGCGTAAGATC 155
| | |||||||||||||| ||||||||| ||| ||||||||| || || ||||| |||
Sbjct 68 C-TCTAGAGACACAGTCG---CCGGAAGATTTCGATCAACCATCGCCGCTTCGTAAAATC 123
Query 156 ATCTCCGTCGCTTCAATCGCCGCCGGTGTACAGTTCGGGTGGGCCTTACAGCTTTCTCTT 215
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 124 ATCTCCGTCGCTTCCATCGCCGCTGGTGTACAGTTCGGGTGGGCCTTACAGCTCTCTCTT 183
Query 216 CTGACTCCTTACATACAACTCCTCGGGATCCCTCACAAATGGTCGTCT-TACATGTGGCT 274
|||||||| ||| | |||||||| || ||||| ||||||||||| ||| | ||| |||||
Sbjct 184 CTGACTCCGTACGTTCAACTCCTTGGAATCCCACACAAATGGTCATCTCT-CATTTGGCT 242
Query 275 TTGTGGTCCTA-TCTCCGGCATGATTGTTCAACCGATCGTCGGTTACCACAGTGACCGAT 333
|||||||| | ||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 243 CTGTGGTCC-AGTCTCCGGCATGATTGTTCAGCCAATCGTCGGTTTCCACAGTGACCGAT 301
Query 334 GCGA-GTCCAGATTCGGTCGCCGTCGTCCTTTCATTGCCGCCGGAGTCGCACTCGTAGCC 392
|| | |||||||||||||||||||||||||||||| || |||||| ||||||||| ||
Sbjct 302 GC-AGGTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCATCCGGAGCCGCACTCGTCGCT 360
Query 393 GTCTCGGTTTTCCTTATCGGATT-CGCGGCGGATATGGGACATAGTTTTGGAGATAAACT 451
||| | |||||||| ||||| || ||| |||||| | || ||| | |||||||||||
Sbjct 361 GTCGCCGTTTTCCTCATCGG-TTACGCTGCGGATTTCGGTTATAAAATGGGAGATAAACT 419
Query 452 CGAGAACAAGGT-AAGGACTCGAGCCATTA-TAATCTTC-CTAAC-CGGGTTTTGGTTCC 507
||| ||||||| || | |||||| | || |||||| || | |||||| ||| |||
Sbjct 420 TGAGGACAAGGTAAAAG-TTCGAGCTA-TAGGGATCTTCGCT--CTCGGGTTCTGGATCC 475
Query 508 TCGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGATTTAGCCG 567
||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 476 TCGACGTTGCCAACAACACCTTACAAGGACCTTGCCGTGCTTTCTTAGCGGATTTAGCCG 535
Query 568 CCGGAGACGCTaaaaaaaCGCGAGTCGCAAACGCGTGTTTCTCCTTCTTTATGGCGGTTG 627
|||| |||||||| | ||||||||||||||| |||| |||||| || |||||||||||||
Sbjct 536 CCGGTGACGCTAAGAGAACGCGAGTCGCAAATGCGTTTTTCTCTTTTTTTATGGCGGTTG 595
Query 628 GAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTTCCTTTCA 687
||||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| ||||
Sbjct 596 GAAACGTTTTGGGATACGCGGCTGGATCGTACACTCACCTTCACAAGATGTTTCCGTTCA 655
Query 688 CAATGACAAAAGCTTGCGACATCTATTGTGCGAATCTCAAGACTTGTTTCTTCTTATCCA 747
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 656 CAATGACAAAAGCTTGCGATATCTATTGCGCGAATCTCAAGACTTGTTTCTTCTTATCCA 715
Query 748 TCACTCTCCTCCTTATCGTCACATTCTCGTCTCTATGGTACGTTAAAGACAAACAATGGT 807
||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 716 TCACTCTCCTCCTCATCGTCACCGTCACGTCTCTTTGGTACGTTAAAGACAAACAATGGT 775
Query 808 CTCCACCTCAA-GGA-----GACAAGGAGGAGAAAACATCAAGTCtttt-tttCTTTGGA 860
|||| || | ||| ||| | || ||||| || ||||| | || ||| || ||
Sbjct 776 CTCCGCCGCCGCGGAACTCCGACGACGACGAGAAGACCTCAAG-CGTTCCTTTGTTCGGT 834
Query 861 GAAATCTTTGGAGCTGTT-AGACACATGAAACGTCCCATGGTG-ATGCTTCTAATTGTCA 918
||||||||||||||| || ||| |||||||||||||||| || ||||||||||| ||||
Sbjct 835 GAAATCTTTGGAGCT-TTCAGAGTCATGAAACGTCCCATG-TGGATGCTTCTAATCGTCA 892
Query 919 CGGTCATTAAT-TGGATCGCTTGGTTTCCATTTATTTTGTAT-GATACCGATTGGATGGG 976
||| | |||| |||||||||||||| |||||| |||||| | ||||| |||||||||||
Sbjct 893 CGGCC-TTAAACTGGATCGCTTGGTTCCCATTTCTTTTGT-TCGATACTGATTGGATGGG 950
Query 977 TCGTGAAGTGTACGGTGGAAACTCAGATGGAGATGAACGATCGAAGAAACTTTAC-GACC 1035
||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||| | ||
Sbjct 951 TCGTGAAGTGTACGGTGGAGATTCAGATGGAAATGAACGATCGAAGAAACTATACAG-CC 1009
Query 1036 AAGGAGTTCAGGCTGGTGC-ATTGGGATTGATGTTTAATTCTATACTTCTTGGTTTCGTG 1094
||||| || ||||||| || |||||||||||||||||||||| ||||||||||| ||
Sbjct 1010 TTGGAGTCCAATCTGGTGCCAT-GGGATTGATGTTTAATTCTATAGTTCTTGGTTTCATG 1068
Query 1095 TCACTTGGTGTTGAATCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGGA-TG 1153
|||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||| |
Sbjct 1069 TCACTTGGTGTTGAATGGATTGGTCGGAAACTAGGAGGAGCTAAACGGCTTTGGGGAAT- 1127
Query 1154 TGTGAATTTCATACTCGCCA-TAGGTTTGGCCATGACGGTTCTTGTTACTAAATCGGCTG 1212
|||||||||||| |||||| | |||||||||||||||||||| ||| | |||| || |
Sbjct 1128 TGTGAATTTCATCCTCGCCGCT-GGTTTGGCCATGACGGTTCTCGTTTCGAAATTAGCCG 1186
Query 1213 AGCATCACCGGGAAATCGCCGGTCCTTTAGCCGGACCGAGCAGTGGTATTAAAGCCGGAG 1272
|| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1187 AGGATCACCGGAAAACCGCCGGTGCTTTAGCCGGACCGAGCAGTGGTATTAAAGCAGGAG 1246
Query 1273 TATTTA-GTCTCTTTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTATTCCATTT 1331
|||| |||||||| | ||||||||||||||||| || ||||||| |||| ||| |||
Sbjct 1247 C-TTTAAGTCTCTTTGCTGTTCTTGGTATCCCATTAGCTATTACTTTTAGTACTCCGTTT 1305
Query 1332 GCACTAGCGTCCATTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTCATTAGGCGTT 1391
|| ||||||||||| ||||||| | |||||||| |||||||| ||||| ||||| |||
Sbjct 1306 GCTCTAGCGTCCATATTCTCAAGCTGCTCCGGTGCAGGCCAAGGGCTTTCTTTAGGAGTT 1365
Query 1392 TTAAATATAGCGATT-TGTATACCACAAATGATAGTATCATTCTCAAG-TGGACCATTGG 1449
|||||| | |||||| || ||||||||||||||||||||| | | || |||||| || |
Sbjct 1366 TTAAATTTGGCGATTGTG-ATACCACAAATGATAGTATCACT-TGGAGGTGGACCTTTTG 1423
Query 1450 ACGCTCAATTCGGCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCAATTGCCGCGGCGG 1509
|||| | ||||||||||||||| |||| | ||| | || | ||||||||| ||||||
Sbjct 1424 ACGCCCTGTTCGGCGGTGGAAACTTACCGGCGTTTATCGTTGCAGCAATTGCAGCGGCGA 1483
Query 1510 TTAGTGGAGTCTTAGCGTTAACCGTTTTACCTTCACCGCCTCCGGACGCACCAGCCATGT 1569
|||||||||| ||||| ||||||||||| ||||||||||| ||||| || || | | |
Sbjct 1484 TTAGTGGAGTATTAGCCTTAACCGTTTTGCCTTCACCGCCACCGGATGC-CC--CTAAGG 1540
Query 1570 CAGGGGCTATGGGA---TTCCATTAGTTAACTA-GTTTTT 1605
|| ||| |||||| ||||| ||||| |||| ||||||
Sbjct 1541 CAACGGCCATGGGAGGATTCCACTAGTTTACTATGTTTTT 1580
> Ahg472513 jgi|Araly1|472513|fgenesh2_kg.1__2467__AT1G22710.1
Length=1956
Score = 713 bits (386), Expect = 0.0
Identities = 1124/1465 (77%), Gaps = 112/1465 (8%)
Strand=Plus/Plus
Query 150 AAGATCATCTCCGTCGCTTCAATCGCCGCCGGTGTACAGTTCGGGTGGGCCTTACAGCTT 209
|||||||| || || ||||| || |||||||||||||||||||| ||||| |||||| ||
Sbjct 236 AAGATCATATCGGTGGCTTCGATTGCCGCCGGTGTACAGTTCGGTTGGGCTTTACAG-TT 294
Query 210 -TCTCT-TCTGACTCCTTACATACAACTCCTCGGGATCCCTCACAAATGGTCGTCT-TAC 266
||||| | |||| |||||| | || || ||||| ||||| || |||||| | ||| |
Sbjct 295 ATCTCTGT-TGACACCTTACGTGCAGCTACTCGGAATCCCACATAAATGGGCTTCTCT-G 352
Query 267 ATGTGGCTTTGTGGTCCTATCTCCGGCATGATTGTTCAACCGATCGTCGGTTACCACAGT 326
|| ||||| |||||||| |||||||| ||| |||| || || ||||| ||||||||||||
Sbjct 353 ATTTGGCTCTGTGGTCCAATCTCCGGTATGCTTGTCCAGCCTATCGTTGGTTACCACAGT 412
Query 327 GACCGATGCGA-GTCCAGATTCGGTCGCCGTCGTCCTTTCATTGCCGCCGGAGTC-GCAC 384
||||| ||| | || |||||||| || |||||||||||||| | |||||||| | |
Sbjct 413 GACCGTTGC-ACCTCTAGATTCGGCCGTCGTCGTCCTTTCATCGTCGCCGGAG-CTGGTT 470
Query 385 TCGT-AGCCGTCT-CGGTTTTCCTTATCGGATT-CGCGGCGGATATGGGACATAGTTTTG 441
| || | | || | | |||||||||||||| || ||| || ||||| || || || | |
Sbjct 471 TAGTCA-CGGT-TGCTGTTTTCCTTATCGG-TTACGCTGCCGATATAGGTCACAGCATGG 527
Query 442 GAGATAAACTCGA-GAACAAG-GTAAGGACTCGAGCCATTA-TAATCTTC-CTAAC-CGG 496
| ||||| || | ||| | | || || ||||| | || || ||| || | |||
Sbjct 528 GTGATAAGCTTAACAAAC-CGCCT-AGAACGCGAGCTA-TAGCGATATTCGCT--CTCGG 582
Query 497 GTTTTGG-TTCCTCGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTTCTTAG 555
||||||| || || ||||||||||||||||||||||||||||| ||| | |||||||| |
Sbjct 583 GTTTTGGATT-CTTGACGTGGCTAACAACACCTTACAAGGACCCTGCAGAGCTTTCTTGG 641
Query 556 CCGATTTAGCCGC-CGGAGACGCTaaa-aaaaCGC-GAGTCGCAAACGCGTGTTTCTCCT 612
| |||||| | || ||| |||| ||| ||||||| || ||||||||||| |||||| |
Sbjct 642 CTGATTTATCAGCAGGGA-ACGC-AAAGAAAACGCGGA-CCGCAAACGCGTTTTTCTCGT 698
Query 613 TCTTTATGGCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCT-TCAC 671
|||||||||||||||||||||||||||||||||| || |||||||||| || || | ||
Sbjct 699 TCTTTATGGCGGTTGGAAACGTTTTGGGTTACGCGGCGGGATCTTACAGAAATCTCT-AC 757
Query 672 AAAAT-GTTTCCTTTCACAATGACAAAAG-CTTGCGA-CATCTATTGTGCGAATCTCAAG 728
||| | || |||||||| ||||| | | | ||||| | |||| || || || |||||
Sbjct 758 AAAGTTGTG-CCTTTCACGATGACTGA-GTCATGCGATC-TCTACTGCGCAAACCTCAAA 814
Query 729 ACTTGTTTCTTCTTATCCATCACTCTCCTCCT-TATCGTCACATTC-TCGTCTCTATGGT 786
|| ||||| ||| ||||||| || || ||||| | | ||||| ||| | ||||| || |
Sbjct 815 ACGTGTTTTTTCCTATCCATAACGCTTCTCCTCT-TAGTCACTTTCATA-TCTCTCTGTT 872
Query 787 ACGTTAAAGACAAACAATGGTCTCCACCTC-AAGGAGACAAGGA-GGAGAAAACATCAA- 843
|||| || || || | |||| | ||| | || || || | | ||| ||||| ||||
Sbjct 873 ACGTGAAGGAGAAGCCATGGACGCCAGAGCCAAC-AG-CA-G-ATGGA-AAAACCTCAAA 927
Query 844 -GT-CtttttttCTTTGGAGAAATCTTTGGAGCTGTT-A-G-ACACATGAAACGTCCCAT 898
|| | |||||| |||||||||||||||||| || | | | || | ||| | || ||
Sbjct 928 CGTTCCGTTTTTC---GGAGAAATCTTTGGAGCT-TTCAAGGA-AC-TAAAAAGACCGAT 981
Query 899 GGTG-ATGCTTCTAATTGTCACGGTCATTAAT-TGGATCGCTTGGTTTCCATTTATTT-T 955
| || |||||||| || ||||| | || ||| |||||||||||||| || ||| || |
Sbjct 982 G-TGGATGCTTCTTATAGTCACTG-CACTAAACTGGATCGCTTGGTTCCC-TTTCCTTCT 1038
Query 956 GTAT-GATACCGATTGGATGGGTCGTGAAGTGTACGGTGGAAACTCAGATGGAGATG-AA 1013
| | || || ||||||||||| ||||| |||||||| ||| ||||||| | | | | ||
Sbjct 1039 CT-TCGACACTGATTGGATGGGCCGTGAGGTGTACGGAGGAGACTCAGACGCAAAAGCAA 1097
Query 1014 C-G-ATC-G--AAGAAACTTTACGACCAAGGAGTTCAG-GCTGGTGCATTGGGA-TTGAT 1066
| | | | | ||||| |||||| || | || || ||| |||||||| ||||| || ||
Sbjct 1098 CCGCAGCCGCTAAGAAGCTTTACAACGACGGGGT-CAGAGCTGGTGCGTTGGGGCTT-AT 1155
Query 1067 GTTTAATTCTATACTTCTTGGTTTCGTGTCACTTGGTGTTGAATCGATTGGTCGGAAAAT 1126
| |||| |||| ||||||||||| |||| |||||||| |||| ||||||||||||| |
Sbjct 1156 GCTTAACGCTATTGTTCTTGGTTTCATGTCTCTTGGTGTGGAATGGATTGGTCGGAAATT 1215
Query 1127 GGGAGGAGCTAAACGACTTTGGGG-ATGTGTGAATTTCATACTCGCCATAGGTTTGGCCA 1185
||||||||||||| | |||||||| || ||| || ||||| |||||||| | |||||||
Sbjct 1216 GGGAGGAGCTAAAAGGCTTTGGGGTAT-TGTTAACTTCATCCTCGCCATTTGCTTGGCCA 1274
Query 1186 TGACGGTTCTTGTTACTAAATC-GGCTGAGCATCACCGG-GAAATCGC--CGGTC-CTTT 1240
|||||||| | ||||| ||| | ||| ||| ||||||| || ||| | ||| | ||
Sbjct 1275 TGACGGTTGTGGTTACGAAA-CAGGCGGAGAATCACCGACGAGATCACGGCGG-CGCTAA 1332
Query 1241 AGCCGGACCGAGCAGTGGTAT--TAA-AGCCGGAGTATTTAG-TCTCTTTACCGTTCTTG 1296
| | ||||| | | ||||| | | ||| || | |||| |||||| ||||||| |
Sbjct 1333 AACAGGACC-ACC--TGGTAACGTCACAGCTGGTGC-TTTAACTCTCTTCGCCGTTCTCG 1388
Query 1297 GTAT-CC-CATTGGCCATTAC-TTACAGTATTCCATTTGCACTAGCGTCCAT-TTTCTCA 1352
|||| || || | ||||||| || |||||||| ||||||||||| ||||| ||| |||
Sbjct 1389 GTATTCCTCAA-G-CCATTACGTTT-AGTATTCCTTTTGCACTAGCTTCCATATTT-TCA 1444
Query 1353 ACCAATTCCGGTGCCGGCCAAGGACTTTCATTAGGCGTTTTAAATATAGCGATTTGTA-T 1411
||||||||||||||||||||||||||||| |||| ||| | ||| |||| ||| || |
Sbjct 1445 ACCAATTCCGGTGCCGGCCAAGGACTTTCCCTAGGTGTTCTGAATCTAGCCATT-GTCGT 1503
Query 1412 ACCACAAATGATAGTATCAT-TCTCAAGTGGACCATTGGACGCTCAATTCGGCGGTGGAA 1470
|| || ||| | ||||| | | | |||||||||| |||| | |||||| |||||||
Sbjct 1504 CCCTCAGATGGTTGTATC-TGTGGGAGGTGGACCATTCGACGAACTATTCGGTGGTGGAA 1562
Query 1471 ACCTACCTTCATTTGTGGTCGGAGCAATTGCCGCGGCGGTTAGTGGAGTCTTAGCGTTAA 1530
|| | || |||||||| | ||||| || || || ||||| ||||| || || |||||||
Sbjct 1563 ACATTCCAGCATTTGTGTTAGGAGCGATCGCGGCAGCGGTAAGTGGCGTATTGGCGTTAA 1622
Query 1531 CCGTTTTACCTTCACCGCCTCCGGA 1555
| || || ||||| |||||||||||
Sbjct 1623 CGGTGTTGCCTTCGCCGCCTCCGGA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5