BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71900.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497264 jgi|Araly1|497264|fgenesh2_kg.106__2__AT1G71900.1 2394 0.0
Ahg316160 jgi|Araly1|316160|fgenesh1_pm.C_scaffold_2001193 1504 0.0
Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1 630 8e-180
> Ahg497264 jgi|Araly1|497264|fgenesh2_kg.106__2__AT1G71900.1
Length=1709
Score = 2394 bits (1296), Expect = 0.0
Identities = 1607/1745 (92%), Gaps = 70/1745 (4%)
Strand=Plus/Plus
Query 22 TCTCAGCGTTTCTCTTTTTGGTCCTCAAATCTTCACCTTCAAGATCTTCTTCGTCCCTCG 81
|||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 1 TCTCAGCGTTTCTCTTTTTGGTCCTCAAATCTTCACCTACAAGATCTTC-T--TCCCTCA 57
Query 82 ATCTCCGATTTCAAATCTCGTTTCTCCGTTCAAGCAACCTCTCTGAATTCCTAGTCTCAC 141
|||||||||||||||||||| |||||||||||||||| | | ||| | |
Sbjct 58 ATCTCCGATTTCAAATCTCGCTTCTCCGTTCAAGCAA---C-C-----TCC-A---T--- 101
Query 142 AGCAGGAATTAGTACTCGGCGAAGCGATTTCTGCTTCGATCTCTACATCTGAAGTTCCGA 201
||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 102 -----GAATTAGTAGTCGGAGAAGCGATTTCTGCTTCGATCTCTAAATCCGAAGTTCCGA 156
Query 202 TCTGACGAAATTTAGGG---T-TCGTCTGGGTCGAAGTTAAA-TAGGAAAAAGATTTCGA 256
||||||||||| ||||| | || ||||||||||||||||| | |||||||| ||||||
Sbjct 157 TCTGACGAAATCTAGGGTTTTCTCATCTGGGTCGAAGTTAAAGT-GGAAAAAGGTTTCGA 215
Query 257 A-TTGGC-TTGAGAATGGCGGAATCTAGTGGAAGTTGGAGAGATTCTTATAAAGGAATGT 314
| ||||| || ||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 216 ATTTGGCGTT-AGAATGGCGGAATCTGGTGGAAGCTGGCGAGATTCTTATAAAGGAATGT 274
Query 315 CGTCTGATAACATCAAGGGTTTGGTTTTAGCGTTGTCTTCTAGTTTGTTCATTGGTGCTA 374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 275 CGTCTGATAACATCAAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTA 334
Query 375 GTTTCATTGTTAAGAAGAAAGGGCTTAAGAAAGCTGCGAGTACTGGTACTAGGGCAGGTG 434
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 335 GTTTCATTGTTAAGAAGAAAGGGCTTAAGAAAGCTGCGAGCACTGGCACTAGGGCAGGTG 394
Query 435 TTGGTGGGTATTCTTATCTCTACGAGCCTCTTTGGTGGATTGGCATGACGACAATGTTAC 494
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 395 TTGGTGGGTATTCTTATCTCTACGAGCCCCTTTGGTGGATCGGCATGACGACAATGTTAC 454
Query 495 TTGGTGAAATTGCCAATTTCGCTGCTTATGCATTTGCGCCTGCTATACTTGTCACTCCTC 554
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 455 TTGGTGAAATTGCCAATTTCGCTGCTTATGCATTTGCGCCGGCTATACTTGTCACTCCTC 514
Query 555 TAGGTGCTGTCAGTATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAAC 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TAGGTGCTGTCAGTATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAAC 574
Query 615 TACATATCTTTGGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACAATTGTCT 674
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 575 TACACATCTTTGGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCT 634
Query 675 TACATGCCCCTCAAGAACGTGAAATTGACTCTGTGATTGAAGTTTGGAATCTTGCAACTG 734
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 635 TACATGCCCCTCAAGAACAAGAAATTGATTCTGTGATTGAAGTTTGGAATCTTGCAACAG 694
Query 735 AACCAGCATTCATGTTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCC 794
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AACCAGCCTTCATGTTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCC 754
Query 795 GTTTTGTGCCCCAATATGGGCAAACAAATGTAATGGTTTACATTGGTATTTGTTCGCTCG 854
|||||| |||| ||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 755 GTTTTGCCCCCCTATATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCGCTTG 814
Query 855 TGGGATCATTATCGGTAATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACCTTTT 914
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 815 TGGGATCATTATCGGTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACATTTT 874
Query 915 CAGGAACAAATCAGTTATTTTATCCTCAAACATGGATATTCACCTTGGTCGTACTTACTT 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 875 CAGGAACAAATCAGTTATTTTATCCTCAAACATGGATATTCACCTTGGTCGTACTTACCT 934
Query 975 GTGTGGTAACCCAACTGAACTACTTAAACAAGGCTCTTGATACATTCAATACAGCTATAG 1034
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GTGTGATAACCCAATTGAACTACTTAAACAAGGCTCTTGATACATTCAATACAGCTATAG 994
Query 1035 TATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGT 1094
|||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 995 TATCTCCTATATACTATGTGATGTTTACATCTCTA-CTATTTTGGCCAGTGTCATCATGT 1053
Query 1095 TTAAG--G-A-------CTGGGATCGGCAAAACGGTACTCAAATTGTTACAGAAATATGT 1144
||||| | | ||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1054 TTAAGTTGTATGAGGGACTGGGATCGACAAAACGGTACTCAAATTGTTACAGAAATGTGT 1113
Query 1145 GGATTTGTTACAATACTTTCAGGCACTTTTCTTCTCCACAGAACAAAGGACATGGTCGAG 1204
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1114 GGATTTGTTACAATACTTTCAGGCACTTTTCTTCTCCACAGAACAAAGGATATGGTCGAG 1173
Query 1205 GGTTCGTCGGTAATATTACCGTTGCGGATAAGCAAGCATATAAATGAAGAAGAAGGCATT 1264
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1174 GGTTCATCGGTAATATTACCGTTGCGGATAAGCAAGCATATAAATGAGGAAGAAGGCATT 1233
Query 1265 CCACTCAGACGCCAAGAATCTCTCCGGTCACCTTAAAAGCTTTTTCGCTCTGTTTTCTGG 1324
||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1234 CCACTTAGACGCCAAGAATCTCTCCGGTCACCTTAAAAGCTTCTTCGCTTTGTTTTCTGG 1293
Query 1325 TCCACTGCGATAACTGCAAACCAGAGAATCAACCTTTTTTCCTTATCTCGACTTATTATG 1384
| ||||||||||||||||||||||| | ||||||| |||||||||||||||| || ||||
Sbjct 1294 TTCACTGCGATAACTGCAAACCAGATAGTCAACCTCTTTTCCTTATCTCGACCTACTATG 1353
Query 1385 AACATGGACCATGGTTCTGTCTAACACTTACAAA-TGGTTCAAGAAGATCGAAGAAGGAA 1443
|||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 1354 AACATGGACCATGGTTCTGTCTAACACTTACAAAATGGTTCTAGAAGATTGAAGAAGGAA 1413
Query 1444 AGAGGAGCA-G----CGAG------GATGAGATCATCTTCT-C-CAA-TATCGGTAAATA 1489
||||||||| | |||| |||||||||||||||| | | | ||||||||||||
Sbjct 1414 AGAGGAGCAAGAGGACGAGATCTCAGATGAGATCATCTTCTTCTCCAGTATCGGTAAATA 1473
Query 1490 TGCTGTGAGTTCAAGCACACGCCATTAGCACACACCCACGCCTAAACCCTTGGTGTGACA 1549
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1474 TGCTGTGAGTTCAAGCACACGCCATTAGCACACACCCACGCGTAAACCCTTT-TGTGGCA 1532
Query 1550 GTTAAAATTTTATAAACAAGAGATGGGTTTTGCCTAAATTGGTCTTACAAGCATCTATAA 1609
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1533 TTTAAAATTTTATAAACAAGAGATGGGTTTTGCTTAAATTGGTCTTACAAGCATCTATAA 1592
Query 1610 CTAAAGGTTTCAATTCAAGATTTGCATTATTTTTTAT-T-GAATCTTCTATTTTTCTTCC 1667
|||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 1593 CTAAAGACTTCAATTCAAGATTTGCATTTTTTTTTATATTGAATCTTCTATTTTTCTTCC 1652
Query 1668 TTAGTTGGTTTGAAGCTTTAAACCCTTTGAAAAACAAGAAATGGAGACTTTGAAAGTTGA 1727
|| | | || | | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1653 TT-G--G-TT-G--G-TTTAAACCCTTTGAAAAACAAGAAATGGAGACTTTCTAAGTTGA 1704
Query 1728 CGAAA 1732
|||||
Sbjct 1705 CGAAA 1709
> Ahg316160 jgi|Araly1|316160|fgenesh1_pm.C_scaffold_2001193
Length=1017
Score = 1504 bits (814), Expect = 0.0
Identities = 965/1035 (93%), Gaps = 21/1035 (2%)
Strand=Plus/Plus
Query 269 ATGGCGGAATCTAGTGGAAGTTGGAGAGATTCTTATAAAGGAATGTCGTCTGATAACATC 328
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAATCTGGTGGAAGCTGGCGAGATTCTTATAAAGGAATGTCGTCTGATAACATC 60
Query 329 AAGGGTTTGGTTTTAGCGTTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAG 388
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAG 120
Query 389 AAGAAAGGGCTTAAGAAAGCTGCGAGTACTGGTACTAGGGCAGGTGTTGGTGGGTATTCT 448
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 AAGAAAGGGCTTAAGAAAGCTGCGAGCACTGGCACTAGGGCAGGTGTTGGTGGGTATTCT 180
Query 449 TATCTCTACGAGCCTCTTTGGTGGATTGGCATGACGACAATGTTACTTGGTGAAATTGCC 508
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TATCTCTACGAGCCCCTTTGGTGGATCGGCATGACGACAATGTTACTTGGTGAAATTGCC 240
Query 509 AATTTCGCTGCTTATGCATTTGCGCCTGCTATACTTGTCACTCCTCTAGGTGCTGTCAGT 568
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AATTTCGCTGCTTATGCATTTGCGCCGGCTATACTTGTCACTCCTCTAGGTGCTGTCAGT 300
Query 569 ATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAACTACATATCTTTGGA 628
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAACTACACATCTTTGGA 360
Query 629 ATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACAATTGTCTTACATGCCCCTCAA 688
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCTTACATGCCCCTCAA 420
Query 689 GAACGTGAAATTGACTCTGTGATTGAAGTTTGGAATCTTGCAACTGAACCAGCATTCATG 748
|||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 421 GAACAAGAAATTGATTCTGTGATTGAAGTTTGGAATCTTGCAACAGAACCAGCCTTCATG 480
Query 749 TTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCCGTTTTGTGCCCCAA 808
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 481 TTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCCGTTTTGCCCCCCTA 540
Query 809 TATGGGCAAACAAATGTAATGGTTTACATTGGTATTTGTTCGCTCGTGGGATCATTATCG 868
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 541 TATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCGCTTGTGGGATCATTATCG 600
Query 869 GTAATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACCTTTTCAGGAACAAATCAG 928
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 601 GTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACATTTTCTGGAACAAATCA- 659
Query 929 TTATTTTATCCTCAAACATGGATATTCACCTTGGTCGTACTTACTTGTGTGG-TAACCCA 987
| || ||| | ||| |||| ||| | || || |||| ||| ||| |
Sbjct 660 --A----AT--TCAT-CGTGGGTATTTT--TTGTT-GT-CTAACTT-TGTTACTAAAGGA 705
Query 988 ACTGAACT--ACTTAAACAAGGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATA 1045
| || | | ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATTGCATTTCACTTA--CA-GGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATA 762
Query 1046 TACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGGACTGG 1105
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 763 TACTACGTGATGTTTACATCTCTAACTATTTTGGCCAGTGTCATCATGTTTAAGGACTGG 822
Query 1106 GATCGGCAAAACGGTACTCAAATTGTTACAGAAATATGTGGATTTGTTACAATACTTTCA 1165
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 GATCGACAAAACGGTACTCAAATTGTTACAGAAATGTGTGGATTTGTTACAATACTTTCA 882
Query 1166 GGCACTTTTCTTCTCCACAGAACAAAGGACATGGTCGAGGGTTCGTCGGTAATATTACCG 1225
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 883 GGCACTTTTCTTCTCCACAGAACAAAGGATATGGTCGAGGGTTCATCGGTAATATTACCG 942
Query 1226 TTGCGGATAAGCAAGCATATAAATGAAGAAGAAGGCATTCCACTCAGACGCCAAGAATCT 1285
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 943 TTGCGGATAAGCAAGCATATAAATGAGGAAGAAGGCATTCCACTTAGACGCCAAGAATCT 1002
Query 1286 CTCCGGTCACCTTAA 1300
|||||||||||||||
Sbjct 1003 CTCCGGTCACCTTAA 1017
> Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1
Length=1643
Score = 630 bits (341), Expect = 8e-180
Identities = 753/950 (79%), Gaps = 36/950 (4%)
Strand=Plus/Plus
Query 282 GTGGAAGTTGGAGAGATTCTTATAAAGGAATGTCGTCTGATAACATCAAGGGTTTGGTTT 341
|||| |||||||||||| | ||||||||||||||||| ||||| || |||||||| ||||
Sbjct 269 GTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCGTCGGATAATATAAAGGGTTTAGTTT 328
Query 342 TAGCGTTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGGCTTA 401
| || || ||||| || || ||||||||||||||||||||||||||||||||||| || |
Sbjct 329 TGGCTTTATCTTCGAGCTTATTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTCA 388
Query 402 AGAAAGCTGCGAG-TACTGGTACT-AGGGCAGGTGT-TGGTGGGTATTCTTATCT-CTAC 457
||| ||||| | | | ||||| || || || ||| | ||| || |||||||| || ||
Sbjct 389 AGAGAGCTG-GTGCTTCTGGT-CTCAGAGCTGGT-TCTGGAGGTTATTCTTACCTGCTT- 444
Query 458 GAGCCTCTTTGGTGGATTGGCATGACGACAATG-TTACTTGGTGAAATTGCCAATTTCGC 516
|||||||| |||||| | ||||||| || ||| || |||| |||||||||||||| ||
Sbjct 445 GAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTG-TTGGGGAAATTGCCAATTTTGC 503
Query 517 TGCTTATGCATTTGCGCCTGCTATACTT-GTCACTCCTCTAGGTGCTGTCAGTATCATTA 575
|||||||| ||||||||||| || || || |||||||| |||||| |||| || ||||
Sbjct 504 CGCTTATGCCTTTGCGCCTGCCATT-TTAGTAACTCCTCTCGGTGCTCTCAGCATAATTA 562
Query 576 TCAGTGCTG-TCTTAGCTCATATTATATTACGGGAAAAACTACATATCTTT-GGAATTCT 633
|||| |||| |||| |||||| | || ||| ||||| | |||| |||| || ||||
Sbjct 563 TCAGCGCTGCTCTT-GCTCATGTCATCCTACACGAAAAGTTGCATA-CTTTTGGGCTTCT 620
Query 634 TGGCTGTGCCTTATGTGTTGTGGGTTCCACAACAATTGTCTTACATGCCCCTCAAGAACG 693
||| |||| |||||||||||| ||||| | ||| || ||||| ||||| ||||||||||
Sbjct 621 TGGTTGTGTCTTATGTGTTGTTGGTTCGATAACTATCGTCTTGCATGCTCCTCAAGAACA 680
Query 694 TGAAATTGACTCTGTGATTG-AAGTTTGGAATCTTGCAACTGAACCAGCATT-CATGTTC 751
|| ||||| |||||| || |||| |||||||||||||| ||||| || || | | | |
Sbjct 681 AGAGATTGATTCTGTG-TTACAAGTATGGAATCTTGCAACAGAACCTGCTTTTCTTCT-C 738
Query 752 TATGC-G-AGTCTGGTAATTGGGGCTGCTGT-ATTTCTCATTA-TCC-GTTTTGTGCCCC 806
|| || | || | | || | || || || | || ||||| | | | |||| || || |
Sbjct 739 TACGCTGCAG-CAG-TAGTAGGAGCAGCCATTATA-CTCAT-AGTTCAGTTT-GTACCAC 793
Query 807 AATATGGGCAAACAAATGTAATGGTTTACATTGGTATTTGTTCGCTCGTGGGATCATTAT 866
| || || || || |||| ||||| || || || ||||||| || || |||||||| |
Sbjct 794 AGTACGGACAGTCACATGTCATGGTCTATATCGGGGTTTGTTCTCTTGTTGGATCATTGT 853
Query 867 CGGTAATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACCTTTTCAGGAACAAATC 926
|||| ||||| || ||||| || || |||||||||||||| || |||||||||| ||||
Sbjct 854 CGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTTACGTTTTCAGGAATGAATC 913
Query 927 AGTTATTTTATCCTCAAACATGGATATTCAC-CTTGGTCGTACTTACTTGTGTGGTAACC 985
||||| |||| ||||| |||||| | ||| | || | | || ||||| || ||| |||||
Sbjct 914 AGTTAATTTACCCTCAGACATGGGTCTTCTCGCT-GATAGTTCTTACCTGCGTGATAACC 972
Query 986 CAACTGAACTA-CTTAAACAAGGCTCTTGATACATTCAATACAGCTATAGTATCTCCTAT 1044
||| ||||||| || ||||||||| ||||| || ||||| || ||| |||| || || ||
Sbjct 973 CAAATGAACTATCT-AAACAAGGCGCTTGACACGTTCAACACGGCTGTAGTTTCACCCAT 1031
Query 1045 ATACTACGTGATGTTCACATC-TCTAACTATTTTGGCTAGTGTCATCATGTTTAAGGACT 1103
|||||| || ||||||||||| | | || || |||||||||||||||||||||||||||
Sbjct 1032 ATACTATGTTATGTTCACATCGT-TGACCATCCTGGCTAGTGTCATCATGTTTAAGGACT 1090
Query 1104 GGGATCGGCAAAACGGTACTCAAATTGTTACAGAAATATGTGGATTTGTTACAATACTTT 1163
||||||| || |||| ||||| ||||| || || | ||||| ||||| ||||| ||||
Sbjct 1091 GGGATCGACAGGACGGAACTCAGATTGTGACGGAGTTGTGTGGGTTTGTGACAATCCTTT 1150
Query 1164 CAGGCACTTTTCTTCTCCACAGAACAAAGGACATGGTCGAGGGTTCGTCG 1213
|||| || ||||| || |||| ||||||||||||||| || ||||| |||
Sbjct 1151 CAGGAACCTTTCTGCTTCACAAAACAAAGGACATGGTTGATGGTTCTTCG 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5