BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71910.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476317 jgi|Araly1|476317|fgenesh2_kg.2__1447__AT1G71910.1 1066 0.0
Ahg887336 jgi|Araly1|887336|Al_scaffold_0106_3 494 7e-139
> Ahg476317 jgi|Araly1|476317|fgenesh2_kg.2__1447__AT1G71910.1
Length=926
Score = 1066 bits (577), Expect = 0.0
Identities = 795/894 (89%), Gaps = 40/894 (4%)
Strand=Plus/Plus
Query 1 AGAGACAAAATATTAATTTGTTACCATAGTTACAGATTTCTTTCGAATAATCAATCAATA 60
||||||||||| ||| |||||||||||| ||||| |||||||||| ||| | |||
Sbjct 1 AGAGACAAAATTTTATTTTGTTACCATAATTACATATTTCTTTCG---AAT--A--AAT- 52
Query 61 AACAAAACTCTTTCTCTACAAGTCCTAAAATCCTTAGAGAAAG-AAAGAAATAAAATAGA 119
||||| ||||||||| ||| ||||||||||||||||||||| ||| ||| |||| | |
Sbjct 53 --CAAAA-TCTTTCTCTGCAACTCCTAAAATCCTTAGAGAAAGAAAAAAAAGAAAA-AAA 108
Query 120 ATAAGAGAACTTGTTGTAGCAGTTGAAGCAGAAAATAAACAGAGTAACGAATCCAACATC 179
| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 109 AAAAAAGCGCTTGTTGTAGCAGTTGAAGCAGAAAAAAAACAGAGTAACGAATCCAACATC 168
Query 180 ACAAAACAAAACACAAACTGTGTGTTGtctctcttctttggtcttctcttcttcttcttc 239
||||||||||||||||||||||||||| || ||||||| || | || ||||||||
Sbjct 169 ACAAAACAAAACACAAACTGTGTGTTG----TC-TCTTTGG---TC-C-TC-TCTTCTTC 217
Query 240 ttctttttctttttaagtatttttattttttggtttcttGATCTCAGAAAAAATGGCTCT 299
| | |||| || || |||||||||||||||||||||| ||||||||||||
Sbjct 218 -T-TGTTTC----------TTCTT-TTTTTTGGTTTCTTGATCTCAG-AAAAATGGCTCT 263
Query 300 GAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGATTCTTCTCA 359
||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 264 GAACAGTGTCTCATCTGAAGAATTTAGCTTCCCATCGCTAGCTTCTCATGATCCTTCTCA 323
Query 360 CCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTT-ACTTCCTTTCGCC 418
|||||| ||||| |||||||||||||||||||||||||| |||||| || ||||| ||||
Sbjct 324 CCATTCTGGTCTCGATTCACCTCCTTTGTGGAAACACTCGCCGGTTAAC-TCCTTCCGCC 382
Query 419 GGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGATCATGATC 478
|||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||
Sbjct 383 GGAAAGATTACGACTTTGGTTTAGCGAGATTACTCATTGGAAAAGACGATGATCATGATC 442
Query 479 AGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAAAGAAGAGG 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 443 AGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATGGACGACAAAGAAGAGG 502
Query 539 AGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAGTCAGAGTT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 503 AGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAGCCAGAGTT 562
Query 599 TGAGAATTGTACATGGCGGCGACGGTGGAGAGAAGAAAACGGCTTTGTTTCCCGATGAGA 658
| || |||| || |||||| |||||||||||||||||| || |||||||| ||||||| |
Sbjct 563 TAAGGATTGAACCTGGCGGTGACGGTGGAGAGAAGAAACCGTCTTTGTTTTCCGATGAAA 622
Query 659 GCTCTGCCGTGGCCGTGGGGTGTGGGATGAAGTTATCGAAGAAGACAAAGAAGAAGACGA 718
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 623 GCTCTGCCGTGGCGGTGGGGTGTGGGATGAAGTTATCGAAGAAGACGAAGAAGAAGAAGA 682
Query 719 ATCTGAACGTTTTGGTGTTGATGAGGGTTTTGAAGAAGCTTATTGTGTTGCGAAGTTCGT 778
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 683 ATCTGAATGTGTTGGTGTTGATGAGGGTTTTGAAGAAACTTATTGTGTTGCGAAGTTCGT 742
Query 779 CTCAGAGGTCGCCGGTGAAAACTCATCCACGGTGATTGATCTCCACCGTGATAATTGTGA 838
| ||||| |||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 743 CACAGAGATCGCCGGTGAAAACTCATCCACGGTGATCGATCTCCACCTTGGTAATTGTGA 802
Query 839 ATTGGGGGGTTATTTTGTGGAATTCAGAACTTACGGGGCTTTTGTGGAGAAAAT 892
||| ||||||||||| | || || | || ||||||||||||||||||| ||||
Sbjct 803 ATTTTGGGGTTATTTTTTAGAGTTTATAAGTTACGGGGCTTTTGTGGAGCAAAT 856
Score = 113 bits (61), Expect = 2e-24
Identities = 68/71 (96%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 925 TAGTTTGGGTGGTTCACAAAAATTAATTTTAGGGTCCTAA-ATTTTTAATAACACATCTG 983
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 856 TAGTTTGAGTGGTTCACAAAAATTAATTTTAGGGTCCTAATATTTTTAATAACACATCTG 915
Query 984 AAGTCTTTTTT 994
||||||||||
Sbjct 916 GAGTCTTTTTT 926
> Ahg887336 jgi|Araly1|887336|Al_scaffold_0106_3
Length=330
Score = 494 bits (267), Expect = 7e-139
Identities = 310/331 (94%), Gaps = 2/331 (1%)
Strand=Plus/Plus
Query 292 ATGGCTCTGAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGAT 351
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCTCTGAACAGTGTCTCATCTGAAGAATTTAGCTTCCCATCGCTAGCTTCTCATGAT 60
Query 352 TCTTCTCACCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTT-ACTTC 410
||||||||||||| ||||| |||||||||||||||||||||||||| |||||| || ||
Sbjct 61 CCTTCTCACCATTCTGGTCTCGATTCACCTCCTTTGTGGAAACACTCGCCGGTTAAC-TC 119
Query 411 CTTTCGCCGGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGA 470
||| |||||||||||||||||||||||||| || |||||| ||||||||||||||| |||
Sbjct 120 CTTCCGCCGGAAAGATTACGACTTTGGTTTAGCGAGATTACTCATTGGAAAAGACGATGA 179
Query 471 TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATGGACGACAA 239
Query 531 AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAG 299
Query 591 TCAGAGTTTGAGAATTGTACATGGCGGCGAC 621
|||||||| || |||| || |||||| |||
Sbjct 300 CCAGAGTTTAAGGATTGAACCTGGCGGTGAC 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5