BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71930.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316163 jgi|Araly1|316163|fgenesh1_pm.C_scaffold_2001196 1519 0.0
> Ahg316163 jgi|Araly1|316163|fgenesh1_pm.C_scaffold_2001196
Length=981
Score = 1519 bits (822), Expect = 0.0
Identities = 930/982 (95%), Gaps = 8/982 (1%)
Strand=Plus/Plus
Query 66 ATGGATAATATAATGCAATCGTCAATGCCACCGGGATTCCGATTTCATCCGACAGAGGAA 125
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAATATAATGCAATCGTCTATGCCACCGGGATTCCGATTTCATCCGACAGAGGAA 60
Query 126 GAGCTTGTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTC 185
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTGTGGGTTATTACCTAGAGAGAAAGATCAATTCAATGAAGAGTGCTTTAGATGTT 120
Query 186 ATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGCGAGGTGTAAACTA 245
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGCTAGGTGTAAACTA 180
Query 246 GGGTATGAAGAGCAAAACGAGTGGTACTTCTTTAGTCATAAGGACAGGAAGTACCCTACC 305
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 GGGTATGAAGAACAAAATGAGTGGTACTTCTTTAGTCATAAGGATAGGAAGTACCCGACC 240
Query 306 GGGACTAGGACCAACCGAGCCACTGCGGCTGGGTTCTGGAAAGCCACGGGTAGAGACAAG 365
||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 241 GGGACTAGGACCAACAGAGCCACCGCGGCAGGGTTCTGGAAAGCCACCGGTAGAGACAAG 300
Query 366 GCGGTACTATCAAAAAACAGTGTCATCGGAATGCGGAAGACACTTGTCTACTACAAGGGT 425
|| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAGTACTTTCAAAGAACATTGTCATCGGAATGCGGAAGACACTTGTCTACTACAAGGGT 360
Query 426 CGAGCTCCTAATGGAAGAAAGTCCGATTGGATCATGCACGAATACCGTCTCCAAAACTCC 485
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CGAGCTCCTAATGGAAGAAAGTCCGATTGGATCATGCACGAATACCGCCTCCAAAACTCC 420
Query 486 GAGCTTGCCCCGGTTCAGGAGGAAGGCTGGGTGGTGTGTCGAGCATTTAGGAAGCCAATT 545
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 421 GAGCTTGCCCCAGTTCAGGAGGAAGGGTGGGTGGTGTGTCGAGCATTCAGGAAGCCAATT 480
Query 546 CCAAACCAGAGGCCATTAGGGTACGAGCCATGGCAGAACCAGCTCTACCACGTCGAAAGT 605
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 481 CCAAACCAGAGGCCATTAGGGTACGAGCCATGGCAGAACCAGCTATACCACGTTGAAAAT 540
Query 606 AGTAACAACTACTCATCTTCAGTGACAATGAACACGAGTCATCATATCGGTGCATCTTCA 665
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AGTAACAACTACTCATCTTCAGTGACGATGAACACGAGTCATCATATCGGTGCATCTTCA 600
Query 666 TC-AAGTCATAACCTTAATCAAATGCTCATGAGCAATAACCACTACAATCCTAATAATAC 724
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGAAC-CATAACCTTAATCAAATGCTCATGAGCAATAACCACTACAATCCTAATAATGT 659
Query 725 ATCCTCATCGATGCATCAATATGGCAACATTGAGCTCCCGCAGTTGGACAGCCCGAGCTT 784
||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||
Sbjct 660 ATCCTCATCGATGCATCAATATGGCAACAACGAGCTACCTCAGCTGGACAGCCCGAGCTT 719
Query 785 GTCGCCTAGTTTAGGGACGAATAAAGATCAGAACGAGAGTTTCGAGCAAGAAGAAGAGAA 844
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCGCCGAGTCTAGGGACAAATAAAGATCAGAACGAGAGTTTCGAGCAAGAAGAAGAGAA 779
Query 845 GAGCTTTAACTGTGTGGATTGGAGAACACTAGATACCTTGCTTGAGACACAAGTCATACA 904
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 780 GAGCTTTAACTGTGTGGATTGGAGAACACTAGATAGCTTGCTTGAGACACAAGTCACACA 839
Query 905 TCCGCATAACCCTAATATTCTTATG--TTCG----AAACGCAGTCGTATAATCCGGCGCC 958
||| |||||||||||| |||||||| |||| |||||||||||||| ||||||||||
Sbjct 840 TCCACATAACCCTAATGTTCTTATGACTTCGTTCGAAACGCAGTCGTATCATCCGGCGCC 899
Query 959 AAGCTTCCCTTCCATGCATCAAAGCTATAATGAGGTCGAAGCTAATATTCATCATTCTCT 1018
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 900 GAGCTTCCCTTCCATGCATCAAAACTATAATGAGGTCGAAGCCAATATTCATCATTCTCT 959
Query 1019 TGGATGCTTCCCTGACTCGTAA 1040
||||||||||||||||||||||
Sbjct 960 TGGATGCTTCCCTGACTCGTAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5