BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71940.2
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476324 jgi|Araly1|476324|fgenesh2_kg.2__1454__AT1G71940.1 1208 0.0
> Ahg476324 jgi|Araly1|476324|fgenesh2_kg.2__1454__AT1G71940.1
Length=1227
Score = 1208 bits (654), Expect = 0.0
Identities = 718/750 (96%), Gaps = 0/750 (0%)
Strand=Plus/Plus
Query 254 GGTGATGGCTCCGACTCGGATTCTAACCAGAGACGAAGAGCTTGGTGTTATTTCAGACGA 313
|||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 139 GGTGATGGCTCCAACACGGATTCTAACAAGAGACGAAGAGCTTGGTGTTATATCTGACGA 198
Query 314 TGATGATTCTCCATCGGGTAAAAGATCTAAACTTGATCGCTTCCCTCTTAGCCGTTGGGA 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 199 TGATGATTCTCCATCGGGTAAAAGATCTAAACTTGATCGCTTCCCTCTTAGCCGGTGGGA 258
Query 374 ACTCGCCGTTTCTCTCGGTGTCTTCCTCGTCTTCTCCTCTGGACTCTGTTGTATCTACAT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 259 ACTCGCCGTTTCTCTCGGTGTCTTCCTCGTCTTCTCCTCTGGACTCTGTTGTATCTATAT 318
Query 434 GACCATGCCTGCTGCTGAATTTGGCAAACTCAAACTTCCAAGAAGCCTCGCTGATCTCCG 493
||||||||||||||||||||||||||| || || ||||| |||||| |||||||||||||
Sbjct 319 GACCATGCCTGCTGCTGAATTTGGCAAGCTTAAGCTTCCTAGAAGCATCGCTGATCTCCG 378
Query 494 TTTGCTCAAAGATAATCTAGCAAATTATGCGAATGAGTATCCGGCGCAGTTTGTTTTAGG 553
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 379 TTTGCTCAAAGATAATCTAGCAAACTATGCGAATGAGTATCCGGCGCAGTTCGTTTTAGG 438
Query 554 GTATTGTGCAACGTACATTTTTATGCAGACCTTTATGATTCCAGGGACTATCTTCATGTC 613
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTATTGTGCGACGTACATTTTTATGCAGACCTTTATGATTCCAGGGACTATCTTCATGTC 498
Query 614 ACTATTAGCTGGAGCTCTCTTTGGAGTATTCAAAGGTGTTGTCTTGGTTGTTTTCAATGC 673
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 ATTGTTAGCTGGAGCTCTCTTTGGAGTATTCAAAGGTGTTGTCTTGGTTGTTTTCAATGC 558
Query 674 AACAGCAGGAGCTACCTCGTGTTTCTTTTTGTCGAAATTGATTGGTCGGCCGTTGATTAC 733
||| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 559 AACTGCGGGAGCTACTTCGTGTTTCTTTTTGTCGAAGTTGATTGGTCGGCCTTTGATTAC 618
Query 734 TTGGCTATGGCCTGACAAATTAAGATTCTTTCAAGCAGAGATTAGTAAGCGTAGAGATAA 793
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 619 TTGGCTATGGCCTGACAAATTAAGATTCTTTCAAGCAGAGATCAGTAAGCGTAGAGATAA 678
Query 794 GCTTCTGAACTATATGTTGTTTCTGAGGATAACACCAACTCTGCCAAATCTTTTTATCAA 853
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 679 GCTTTTGAACTATATGTTGTTTTTGAGGATAACACCAACTCTGCCAAATCTTTTTATCAA 738
Query 854 TCTTGCATCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGG 913
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCTTGCTTCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGG 798
Query 914 TCTCATTCCTGCAGCTTATATAACTGTCAGAGCTGGCCTTGCTATTGGAGATCTCAAATC 973
|||||| || |||||||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 799 TCTCATCCCAGCAGCTTATATAACCGTTAGAGCTGGCCTCGCTATCGGAGATCTCAAATC 858
Query 974 GGTGAAAGATCTGTATGATTTCAAGACATT 1003
||||||||||||||||||||||||||||||
Sbjct 859 GGTGAAAGATCTGTATGATTTCAAGACATT 888
Score = 119 bits (64), Expect = 6e-26
Identities = 93/105 (89%), Gaps = 9/105 (9%)
Strand=Plus/Plus
Query 94 CTAGGGTTCATCACT-G-AAATCAAAAATGCAATTAAATCTCTACAAAATCTCTCAGATC 151
||||||||||||||| | ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 40 CTAGGGTTCATCACTGGAAAATC-AGAATGCAATTGAATCTCTACAAAATCTCTCAGATC 98
Query 152 TAATCCCAGATCGTTGTTGGTTTCTTCTCCGTAAACCAA-TCCCA 195
|||||||||||| |||||| ||||| | | |||| |||| |||||
Sbjct 99 TAATCCCAGATCTTTGTTG-TTTCT-C-C-GTAA-CCAAATCCCA 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5