BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71950.1

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316165 jgi|Araly1|316165|fgenesh1_pm.C_scaffold_2001198           532    1e-150


> Ahg316165 jgi|Araly1|316165|fgenesh1_pm.C_scaffold_2001198
Length=405

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 378/418 (90%), Gaps = 20/418 (5%)
 Strand=Plus/Plus

Query  41   ATGCAAACATTTGCTCCTGGAACAAGAGTCTACC---ACC-TCATCATCATCGtcttctt  96
            |||||||||||||||| ||||||||| |||||||   |||  || ||||||| || || |
Sbjct  1    ATGCAAACATTTGCTCGTGGAACAAGCGTCTACCTGAACCACCA-CATCATCATCATCAT  59

Query  97   cttcttcttctGCTTATCATCGTTCTTCGCTTCAATCGTCATGGCTGATGAATATACCGG  156
            | || |||||| |||||  ||  || |||     |||||||||||   ||||| ||| ||
Sbjct  60   CATCGTCTTCTTCTTAT--TC--TCATCG-----ATCGTCATGGC---TGAATCTACTGG  107

Query  157  AGAAGCAACGGGATCGTCGGAAGCAAAGGTTCACATCATCTACACCGAGAAACCTACCGA  216
            || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  108  AGCAGCAACGGTATCGTCCGAAGCAAAGGTTCACATCATCTACACCGAGAAACCCACCGA  167

Query  217  TGAAGAACCTAAAACCTATCATCTCCGTACCCTTTCCTCTGCTCTCGGCAGTGAGGAAGC  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  168  TGAAGAACCTAAAACCTATCATCTCCGTACCCTTTCCTCTGCTCTCGGCAGTGAGGAAGC  227

Query  277  TGCAAAAGATGCTTTGATTTACAGTTACAAGGAAGCTGCTTCTGGTTTTTCAGCTAAGCT  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  TGCAAAAGATGCTTTGATTTACAGTTACAAGGAAGCTGCTTCTGGTTTTTCAGCTAAGCT  287

Query  337  CACTCCTGAGCAAGTCGCTGAGATATCAAAACAACCAGGTGTGATTCAAGTTGTGCCAAG  396
            ||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct  288  CACACCTGAGCAAGTCTCCGAGATATCAAAACAACCAGGTGTAATTCAAGTTGTGCCAAG  347

Query  397  CCAGACTTATCAGCTGCACAAACCTGGTGGTGGTGGTGGT--TT-CAAGTTGACCTAA  451
            ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct  348  CCAGACTTATCAGCTGCACAAACCTGGTGGTGGTGGTGGTGGTTTCAAGTTGACCTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26495427315


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5