BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71960.1
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476326 jgi|Araly1|476326|fgenesh2_kg.2__1456__AT1G71960.1 3210 0.0
> Ahg476326 jgi|Araly1|476326|fgenesh2_kg.2__1456__AT1G71960.1
Length=2208
Score = 3210 bits (1738), Expect = 0.0
Identities = 1972/2085 (95%), Gaps = 15/2085 (1%)
Strand=Plus/Plus
Query 1 AGCTTTCTCCATTTTCACctctctctctctGTGttttttttAACTCCGTTTAAATTTTCC 60
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGCTTTCTTCATTTTCACATCTCTCTCTCTGTTTTTTTTTTAACTCCGTTTAAATTTTCC 60
Query 61 GTCTGAATTTTACAAAGGAACACTAATGTCAGCTTTTGACGGCGTTGAAAATCAAATGAA 120
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 61 GTCTGAATTTTACAAAGGAAGACCAATGTCAGGTTTTGACGGCGTTGAAAATCAAATGAA 120
Query 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGCCTCGCTCATTATTATC 180
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGACTCGCTC---ATTATC 177
Query 181 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTTGATGTGTGTTACCGAGTCAAGATCCA 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 178 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTCGATGTGTGTTACCGAGTCAAGATCAA 237
Query 241 TGGCATGAGTAACGATTCTTGTAATATCAAGAAACTATTAGGATTAAAACAAAAACCGTC 300
||||||||||| ||||||||||||| |||||||| | |||||| ||||||| |||||||
Sbjct 238 TGGCATGAGTAGCGATTCTTGTAATTTCAAGAAATTTTTAGGACTAAAACATCAACCGTC 297
Query 301 CGATGAGACAAGATCGACGGAGGAGAGGACGATACTAAGCGGAGTCACCGGAATGATATC 360
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 298 CGATGAGACAAGATCAACGGAGGAGAGGACGATACTAAGCGGTGTCACCGGAATGATATC 357
Query 361 ACCCGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGCAAATCTACGCTACTAAA 420
|| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 358 TCCGGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGTAAATCAACTCTACTTAA 417
Query 421 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTCACCGGAAAAATACTTATAAACGACGG 480
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 418 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTTACCGGGAAAATACTCATAAACGACGG 477
Query 481 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 537
Query 541 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTGGCTTTGCTTCGTCTTCCTCGGAG 600
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 538 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTCGCCTTGCTTCGTCTTCCTCAGAG 597
Query 601 TCTAACAAGAGACGTTAA-ACTCAGAGCCGCTGAATCGGTTATATCGGAGCTAGGTTTAA 659
|||||| ||||||| ||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 598 TCTAACCAGAGACGATAAGA-TCAGAGCCGCTGAATCGGTTATATCGGAGCTTGGTTTAA 656
Query 660 CGAAATGTGAGAACACAGTCGTTGGGAACACTTTCATTAGAGGTATCTCTGGTGGAGAAA 719
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 657 CGAAATGTGAGAACACAGTCGTTGGAAACACTTTCATTAGAGGGATCTCTGGTGGAGAAA 716
Query 720 GGAAACGAGTTAGTATAGCTCATGAATTGCTTATAAACCCGAGTCTT-TTGGTTCTTGAT 778
|||||||||| ||||| |||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 717 GGAAACGAGTGAGTATTGCTCATGAATTGCTAATAAACCCGAGTCTTCTTG-TTCTTGAT 775
Query 779 GAGCCTACTTCGGGTCTTGATGCTACGGCGGCGCTCCGGTTGGTTCAGACTCTTGCCGGG 838
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 776 GAGCCTACTTCGGGTCTTGATGCTACCGCGGCGCTCCGGTTGGTTCAGACTCTTGCGGGG 835
Query 839 TTGGCTCATGGGAAAGGAAAAACGGTGGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 898
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 836 TTGGCTCATGGGAAAGGAAAGACGGTTGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 895
Query 899 TTTCAGATGTTTGATACGGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGAAAA 958
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 896 TTTCAGATGTTTGATACTGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGGAAA 955
Query 959 GGAAGAGACGCCATGGCTTACTTTGAATCCGTCGGATTTTCGCCGGCTTTTCCTATGAAT 1018
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 956 GGAAGAGACGCCATGGCTTACTTTGAGTCCGTCGGATTCTCGCCGGCGTTTCCTATGAAT 1015
Query 1019 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACGGAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1016 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACCGAA 1075
Query 1079 CGGGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1138
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CGCGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1135
Query 1139 CAAGTCAAAACTTGTATCGAAGTGTCACATTTTCCTCAAGACAACGCGCGTTTCGTGAAA 1198
|||||||||||||| ||||||| |||||| ||||||||||| ||||||||||| ||||||
Sbjct 1136 CAAGTCAAAACTTGCATCGAAGCGTCACAGTTTCCTCAAGAGAACGCGCGTTTTGTGAAA 1195
Query 1199 ACGCGAGTAAACGGCGGTGGAATAACAACATGTATTGCAACATGGTTTAGCCAACTCTGC 1258
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 ACGCGAGTAAGCGGCGGTGGAATAACAACATGTATTACAACATGGTTTAGCCAACTCTGC 1255
Query 1259 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCACGAATCCTTT-GACTTACTTCGCA- 1316
||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| |
Sbjct 1256 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCATGAATC-TTTCGACGCACTTCG-AG 1313
Query 1317 TTTTCCAAGTCGTCGCGGCTTCGATCCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1376
||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1314 TTTTCCAAGTCATCGCGGCGTCGTTGCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1373
Query 1377 GAGACGTACATGACCGACTAGGCCTACTCTTCTTCATATCCATCTTTTGGGGAGTACTTC 1436
||||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1374 GAGACATACATGACCGACTAGGCCTACTATTCTTCATATCCATCTTCTGGGGGGTGCTTC 1433
Query 1437 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCAATTTTCACTAGAGAGCGTG 1496
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1434 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCGATTTTCACTCGAGAGCGTG 1493
Query 1497 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTACTCGGATCGCTCTCCA 1556
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1494 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTCCTCGGATCGCTCTCCA 1553
Query 1557 TGGAGCTCGTTCTTCCGGCAT-CATTCTTGACGTTCACTTATTGGATGGTCTATCTACGC 1615
||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||
Sbjct 1554 TGGAGCTCGTTCTTCCGGC-TGCATTCTTGACGTTAACTTATTGGATGGTCGATCTACGC 1612
Query 1616 CCCGGGATAGTCCCATTCCTCCTCACCCTCTCCGTGCTTTTACTATACGTTTTAGCGTCA 1675
||||| | | ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1613 CCCGGTCTTGCCCCATTCCTCCTCACCCTCTCCGTGCTCTTACTATATGTTTTAGCGTCA 1672
Query 1676 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1732
Query 1736 GTGACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTACGTCAACAAAGTGCCA 1795
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1733 GTAACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTATGTCAACAAAGTGCCA 1792
Query 1796 TCCGGAATGGTGTGGATGAAATACGTTTCCACGACGTTTTATTGTTACCGTCTTTTAGTG 1855
||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1793 TCCGGAATGGTGTGGTTGAAATACGTCTCCACAACATTTTATTGTTACCGTCTTTTAGTG 1852
Query 1856 GC-GATCCAATACGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCAAAGGG 1914
|| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1853 GCTG-TCCAATATGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCGAAGGG 1911
Query 1915 TAAGCAAGGAGCGAGTGCGGCGACATCGGCTGGATGTCGATTTGTGGAGGAGGAAGTGAT 1974
||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1912 TAAGCAAGGAGCGGGTGCGGCGACATCGGCTGGATGCCGGTTTGTGGAAGAGGAAGTGAT 1971
Query 1975 CGGAGATGTTGGGATGTGGACGAGCGTTGGTGttttgtttttgatgttttttGGGTATAG 2034
||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1972 CGGAGATATTGGTCTATGGACGAGCGTTGGTGTTTTGTTTTTGATGTTTGTTGGGTATAG 2031
Query 2035 AGTATTGGCATATCTAGCTTTGAGACGTATCAAACATTAAATAAA 2079
|||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2032 AGTATTGGCATATCTAGCTTTGAGGCGTATTAAACATTAAATAAA 2076
Score = 215 bits (116), Expect = 1e-54
Identities = 134/142 (94%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 2101 TTAAATAAAAATGAGTGGGT-AAATTTAATTTTTAGGG-TTCTAGTTCGGAATATTAAAA 2158
|||||||||||||||||||| ||||||| ||||||||| || || ||||||||||||| |
Sbjct 2068 TTAAATAAAAATGAGTGGGTAAAATTTAGTTTTTAGGGCTT-TAATTCGGAATATTAAGA 2126
Query 2159 CGTCGCTAATTGTAATTTTGCGATTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2218
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2127 CGTCGCTAATTGTAATTTTGCGGTTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2186
Query 2219 AAATGACAAGTATTTTTAATTG 2240
|||||||||||||||||| |||
Sbjct 2187 AAATGACAAGTATTTTTAGTTG 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85360239045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5