BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71970.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926556 jgi|Araly1|926556|scaffold_202117.1 1055 0.0
> Ahg926556 jgi|Araly1|926556|scaffold_202117.1
Length=718
Score = 1055 bits (571), Expect = 0.0
Identities = 672/721 (93%), Gaps = 6/721 (1%)
Strand=Plus/Plus
Query 52 ttttcttcttcttcttcCTCATGGATTCTTTAAGAACTCGAAATGTATCCAAAAGATCCG 111
||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||
Sbjct 1 TTTTCTTCTTCTTCTTCCTTATGGATTCTTCAAGAACCCGAAATGTATCCAAACGATCCG 60
Query 112 ATCCGATCAACTTTCCGGCGAAGTCATCCATTTCATCCCGGAGATCATTAtcttcttctt 171
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 ATCCGGTCAACTTTCCGGCGAAGTCATCCATTTCATCACGGAGATCTTTATCTTCTTCTT 120
Query 172 cttccttctcatctttttcctcctgctcctctagctcccttgtctttccCGGCGACTCTC 231
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 121 CTTCCTTCTCGTCTTTTTCCTCCTGCTCCTCTAGCTCCCTCGTATTTCCCGGCGACTCTC 180
Query 232 CTCTGAATTCTCCGGCGACTCCTCTCCGTCTACTCGGTGTCCCTTTTTCATGGGAACAAC 291
|| | || ||||||||||||||||||||||| || || |||||||| || ||||||||||
Sbjct 181 CTTTAAACTCTCCGGCGACTCCTCTCCGTCTCCTTGGCGTCCCTTTCTCCTGGGAACAAC 240
Query 292 TTCCCGGAAAACCTAAAGACTACTCTCATAGACTCAACAACCGTCGAAACAATGAATCTT 351
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCCGGAAAACCAAAAGACTACTCTCATAGACTCAACAACCGTCGAAACAATGAATCTT 300
Query 352 CAAATCTATTGCTACCCCTCCCTCCTCACCGGAATATTTCCTTTCCGGCCACCGGaaaaa 411
|||| || | |||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 CAAA--TA-TACTACCCCTTCCTCCTCACCGGAATCTTTCCTTTCCGACCACCGGAAAAA 357
Query 412 aaCCTAAACCTAACAATTCCAGTAAGAAGAACAGCTTCCCCGTGACCGGAAAAGATCCCT 471
||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 358 AACCTAAACCTAACAATTCCAGTAAGAAGAACAACTTCCCCGTTACCGTAAGAGATCCCT 417
Query 472 TCGCGGCTGCGTTGTTGGAATGTTCCAAAGACGAAGGAACAAACAGTGACAACGATGATG 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 418 TCGCGGCTGCGTTGTTGGAATGTTCCAAAGACGAAGGAACAAACAGTGACGACGACGATG 477
Query 532 ACGTCGACGGTGTTGAAGACGTAGATCGAAGGTTTCGAGGAAACTCCGGTGGTTCAAGCA 591
|||| ||||||| ||||||||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 478 ACGTTGACGGTGGTGAAGACGTAGATCGGAGGTTTCGAGGAAATTCCGGTGGTCCGAGCA 537
Query 592 AGGTGTTGTCAAAGAACAGCATCGGAGACAGGTTTGGGTTAGTAAATCTCTACGGTTCTT 651
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AGGTGTTGTCAAAGAACAGCTTCGGAGACAGGTTTGGGTTAGTGAATCTCTACGGTTCTT 597
Query 652 GTCGGAGAACTTGTGCAGTAACAGAGTCCATTGTTTATCTTCCAAGAGCAAGAAAAGCTG 711
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 598 GTCGGAGAACTTGTGCAGTTTCAGAGTCCATTGTTTATCTTCCAAGATCAAGAAAAACTG 657
Query 712 CTTCGTACGATAATCTTCTTC--CA-CGTCGTCGCTGTTGATTTGTTCGTATTTGGTGAT 768
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 658 CTTCGTACGATAATCTTCTTCTTCCTCGTCGTCGCCGTTGATTTGTTCGTATTTGGTGAT 717
Query 769 T 769
|
Sbjct 718 T 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5