BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71980.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881 2060 0.0
> Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881
Length=1347
Score = 2060 bits (1115), Expect = 0.0
Identities = 1271/1348 (94%), Gaps = 4/1348 (0%)
Strand=Plus/Plus
Query 348 ATGAATCGTGCTTTGGTCCTACTTTTATATGTTTGTACTGTTTCTTGTTTAGCTTCAAGC 407
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1 ATGAATCGTGCTTTGGTCCTACTTTTATACGTTTATACTGTTTCTTGTTTAGCTTCAAGC 60
Query 408 AAAGTTATTTTGATGAGGAATAACATCACTCTCTCTTTTGATGACATCGAAGCTAACTTC 467
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AAAGTTATTTTGATGAGGAACAACATCACTCTCTCTTTTGATGACATCGAAGCTAATTTC 120
Query 468 GCTCCGTCAGTGAAGGGTACAGGTGAAATTGGAGTGGTTTATGTGGCTGAGCCTCTTGAC 527
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 GCTCCGTCAGTGAAGGGTACAGGTGAAATTGGAGTAGTTTATGTGGCAGAGCCTCTTGAC 180
Query 528 GCTTGTCAAAATCTTATGAATAAACCAGAACAGAGCTCCAATGAAACTTCTCCTTTTGTG 587
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 GCTTGTCAAAATCTTATGAATAAGCCAGAACAGAGCTCCAATGAAACTTCCCCTTTTGTG 240
Query 588 TTGATTGTTAGAGGAGGCTGTAGTTTTGAAGAGAAAGTTAGAAAAGCTCAGAGAGCTGGT 647
||||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 241 TTGATCGGTAGAGGAGGCTGTAGTTTTGAAGAGAAAGTGAGAAAAGCGCAGAGAGCTGGT 300
Query 648 TTCAAAGCTGCTATTATCTATGACAATGAAGACCGTGGAACATTGATAGCAATGGCAGGT 707
|| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTTAAAGCTGCCATTATCTTTGACAATGAAGACCGTGGAACATTGATTGCAATGGCAGGT 360
Query 708 AACTCTGGAGGTATAAGGATTCATGCGGTCTTT-GTTACGAAAGAAACGGGAGAAGTTTT 766
||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 361 AACTCGGGAGGTATAAAGATTCATGCGGT-TTTCGTTACGAAAGAAACGGGAGAAGTGTT 419
Query 767 AAAGGAGTATGCGGGTTTCCCCGATACGAAAGTTTGGTTGATCCCAAGTTTTGAGAACTC 826
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAAGGATTATGCGGGTTTTCCCGATACGAAAGTTTGGTTGATTCCAAGTTTTGAGAACTC 479
Query 827 GGCGTGGTCTATTATGGCGGTTTCGTTTATCTCGCTGCTTGCAATGTCGGCTGTTCTCGC 886
||||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct 480 GGCGTGGTCGATTATGGCGGTTTCATTCATTTCGCTGCTTGCGATGTCGGCTGTTCTCGC 539
Query 887 TACTTGTTTCTTTGTGCGTAGGCATCGAATAAGAAGGCGGACATCTCGGTCCTCTCGAGT 946
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TACTTGTTTCTTTGTGCGTAGGCATCGGATAAGAAGGCGGACATCTCGGTCCTCTCGAGT 599
Query 947 GCGTGAGTTTCACGGTATGAGCCGCCGCTTGGTGAAAGCAATGCCGAGTCTTATATTCAG 1006
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 CCGTGAGTTCCATGGTATGAGCCGCCGCTTGGTTAAAGCAATGCCGAGTCTTATATTCTC 659
Query 1007 TTCGTTTCATGAAGATAACACTACTGCATTCACTTGTGCTATTTGCCTTGAAGACTACAC 1066
||||||||| ||||| || ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 660 TTCGTTTCACGAAGACAATACTACTGCATTTACTTGCGCTATTTGCCTCGAAGACTACAT 719
Query 1067 TGTTGGAGACAAGCTCAGGCTCTTACCTTGCTGTCACAAGTTTCATGCTGCGTGTGTTGA 1126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 TGTTGGAGACAAGCTCAGGCTCTTACCTTGCTGTCACAAGTTTCATGCTGTGTGTGTTGA 779
Query 1127 CTCATGGTTAACCTCTTGGAGAACTTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAG 1186
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCGTGGTTAACCTCTTGGAGAACTTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAA 839
Query 1187 CACGGGAGAGCCTCCAGCTTCAGAGAGCACGCCATTGCTCTCATCTGCTGCATCGTCTTT 1246
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 CACGGGCGAGCCTCCGGCTTCAGAGAGCACGCCATTGCTCTCATCCGCTGCATCGTCTTT 899
Query 1247 CA-CTTCTTCCTCTCTGCACTCTTCAGTCAGATCATCTGCACTATTGATTGGTCCTTCCT 1305
|| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 900 CAACT-CTTCCTCTCTGCACTCTTCCGTCAGATCATCCGCACTATTGATTGGTCCTTCCA 958
Query 1306 TGGGCTCATTACCAACTTCAATCTCTTTCTCTCCCGCATACGCAAGCTCATCCTATATTA 1365
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 959 TGGGCTCATTACCGTCTTCAATCTCTTTCTCTCCCGCATACGCGAGCTCATCCTATATCA 1018
Query 1366 GACAATCATTCCAGTCTTCCTCTAACCGTCGATCACCTCCAATAAGCGTAAGTCGAAGCT 1425
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 GACAATCGTTCCAGTCTTCCTCTAACCGTCGATCTCCTCCAATAAGCGTAAGTCGAAGCT 1078
Query 1426 CAGTGGATCTCAGACAACAAGCAGCTTCTCCATCTCCATCACCATCACAGAGATCATACA 1485
| |||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1079 CTGTGGATCTAAGGCAACAAGCAGCATCTCCATCACCATCACCATCACAGAGATCATACA 1138
Query 1486 TTTCCCATATGGCTTCTCCACAGTCACTAGGTTACCCAACTATCTCCCCTTTCAACACGA 1545
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1139 TTTCCCATATGGCTTCTCCACAGTCACTGGGTTACCCGACTATCTCCCCTTTCAACACGA 1198
Query 1546 GGTACATGTCACCGTATAGACCTAGCCCGAGCAATGCATCACCTGCAATGGCTGGATCAT 1605
|||||||||||||||| || |||||||||||||||||||| |||||| |||| |||||||
Sbjct 1199 GGTACATGTCACCGTACAGGCCTAGCCCGAGCAATGCATCGCCTGCAGTGGCCGGATCAT 1258
Query 1606 CGAATTATCCGTTGAATCCACTGCGTTACAGTGAATCAGCTGGAACTTTCTCTCCATACG 1665
| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 CAAATTATCCATTCAATCCACTGCGTTACAGTGAATCAGCCGGAACTTTCTCTCCATACG 1318
Query 1666 CCTCTGCAAACTCGCTTCCAGACTGTTA 1693
||||||||||||||||||||||||||||
Sbjct 1319 CCTCTGCAAACTCGCTTCCAGACTGTTA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5