BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71990.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926558 jgi|Araly1|926558|scaffold_202119.1 1914 0.0
> Ahg926558 jgi|Araly1|926558|scaffold_202119.1
Length=1246
Score = 1914 bits (1036), Expect = 0.0
Identities = 1177/1246 (94%), Gaps = 6/1246 (0%)
Strand=Plus/Plus
Query 42 TTTAAGGAATCAATCACACCATGCCAATGAGATACCTCAACGCAATGGCCGCTCTACTAA 101
||||||||||||||| |||||||||||||||| |||||||||| |||||| || ||||||
Sbjct 1 TTTAAGGAATCAATCTCACCATGCCAATGAGACACCTCAACGCTATGGCCACTTTACTAA 60
Query 102 TGATGTTCTTTACTCTCTTGATCCTCTCTTTCACAGGCATTTTAGAATTCCCATCTGCTT 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGATGTTCTTTACTCTCTTGATCCTCTCTTTCACAGGCATTTTAGAATTCCCATCTGCTT 120
Query 162 CAACTTCGATGGAGCATTCAATAGACCCGGAACCGAAATTGTCTGATTCAACATCGGATC 221
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 121 CAACTTCGATGGAGCATTCAATAGACCCGGAACCGAAATTATCTGATCCAACATCGGATC 180
Query 222 CATTCAGTGATGTTCTTGTAGCTTATAAAAAATGGGACTTTGAAGTGGGTTGTGCTCGGT 281
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTCAGTGATATCCTCGTAGCTTATAAAAAATGGGACTTTGAAGTGGGTTGTGCTCGGT 240
Query 282 TTAGGGAGAATCATAAAGATGCGATTTTGGGTAATGTTAGTTCGGGTTCTTTACAAGAAT 341
||| ||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 241 TTAAGGAGAATCACAAAGATTCGATTTGGGGCAATGTTAGTTCGGGTTCTTTACAAGAAT 300
Query 342 TTGGTTGTGGTAAGCTTAAGATGAAGCATGTTAAGGTATTGGTTAAAGGGTGGACTTGGA 401
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 301 TTGGTTGTGGTAAGCTTAAGATGGATCATGTTAAGGTTTTGGTTAAAGGGTGGACTTGGA 360
Query 402 TTCCGGATAATTTGGAAAATTTGTATTCTTGTCGTTGTGGGATGACTTGTTTGTGGACTA 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCTGATAATTTGGAAAATTTGTATTCTTGTCGTTGTGGGATGACTTGTTTGTGGACTA 420
Query 462 AATCATCGGTTTTGGCTGATTCACCTGATGCTTTGTTGTTCGAGACAACAACTCCTCCAC 521
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 421 AATCATCGGTTTTGGCTGATTCACCTGATGCTTTGTTGTTTGAGACAACAACTCCTCCGC 480
Query 522 TACAGAGACGTGTTGGAGATCCGCTCCGTGTGTACATGGAGCTAGAGGCCGGAAGAAAAC 581
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 481 TACAGAGACGTGTTGGAGATCCGCTCCATGTGTACATGGAGCTAGAGGCTGGAAGAAAAC 540
Query 582 GCTCAGGCCGTGAAGATATATTCATCAGCTACCATGCGAAAGACGATGTCCAAACAACTT 641
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 541 GCTCAGGCCGTGAAGATATATTCATTAGCTACCATGCCAAAGACGATGTCCAAACTACTT 600
Query 642 ACGCCGGTTCGCTCTTTCATAATAACAGAAACTATCACATCTCTCCACATAAAAACAATG 701
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGCGGGTTCGCTCTTTCATAATAACAGAAACTATCACATCTCTCCACATAAAAACAATG 660
Query 702 ATGTTCTGGTGTATTGGTCTTCCTCAAGATGCCTCCCTCACAGAGATCGTCTAGCAAAGA 761
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 661 ATGTTTTGGTGTATTGGTCTTCCTCAAGATGCCTCCCTCACAGAGACCGTCTTGCAAAGA 720
Query 762 GCCTACTCGATTTGATTCCCCACCACTCCTTTGGTAAGTGTCTTAACAATGTTGGTGGCT 821
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 GCCTACTCGATCTGATTCCCCACCACTCCTTTGGTAAGTGTCTTAACAATGTCGGTGGCT 780
Query 822 TGGACTCAGCTCTCTCTATGTATCCAGAATGTGTCGCTGAGCAC-AACGCTGA-AGCAAA 879
||||| ||||||||||||||||||||||||||||| | || | | |||||||| | ||||
Sbjct 781 TGGACGCAGCTCTCTCTATGTATCCAGAATGTGTCTCCGA-CTCTAACGCTGAGA-CAAA 838
Query 880 ATGGTACGATCACCTCCACTGCGCTATGTCACACTACAAATTCGTCCTTGCAATCGAAAA 939
|||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 ATGGTATGACCATCTCCACTGCGCTATGTCACACTACAAATTCGTCCTTGCAATTGAAAA 898
Query 940 CACAGCTGTTGAGTCATACGTGACCGAGAAGCTTTTCTATGCGCTCGACTCTGGTTCTGT 999
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 CACAGCTGTTGAGTCATACGTGACCGAGAAGCTTTTCTATGCGCTCGACTCGGGTTCTGT 958
Query 1000 TCCAATCTATTTTGGGGCCTCTAACGT-GCAAGACTTTGTCCCTCCGCATTCCGTGATCG 1058
||| ||||| || || ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 959 TCCGATCTACTTCGGAGCCTCTAACGTTG-AAGACTTTGTCCCTCCGCATTCCGTGATCG 1017
Query 1059 ATGGTAGCAAATTCGGCTCGATGCAGGAGTTGGCTGCGTACGTGAAGCGGCTCGGTGATG 1118
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1018 ACGGTAGCAAATTCGGCTCGATGCAGGAATTGGCGGCGTACGTGAAGCGGCTCGGCGATG 1077
Query 1119 ATCCTGTGGCTTACTCAGAGTACCATGCGTGGAGGCGGTGTGGACTAATGGGGAACTACG 1178
||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct 1078 ATCCTGTGGCTTACTCAGAGTACCACGCTTGGAGGAGGTGTGGACTGATGGGGAACTACG 1137
Query 1179 GGAAAACCCGTGCGGTGAGTCTCGATACATTGCCATGTCGGTTGTGCGAAGAGATTAGCA 1238
|||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1138 GGAAAACCCGCGCAGTGAGTCTAGATACATTGCCGTGTCGGTTGTGCGAAGAGATTAGCA 1197
Query 1239 GAAGAGGTGGGAAGAACGCCGGAGTTTGATGAGCCACATGTGGTTT 1284
||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct 1198 GAAGAGGCGGCAAGAACGCCGGAGTTTGACGAGCCACCGGTGGTTT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5