BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72000.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316170 jgi|Araly1|316170|fgenesh1_pm.C_scaffold_2001203 2244 0.0
Ahg489803 jgi|Araly1|489803|fgenesh2_kg.6__2937__AT4G09510.1 765 0.0
> Ahg316170 jgi|Araly1|316170|fgenesh1_pm.C_scaffold_2001203
Length=1500
Score = 2244 bits (1215), Expect = 0.0
Identities = 1407/1502 (94%), Gaps = 4/1502 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTTAAGCCTTTACGACAGTGCACATTCACTAGACGGTAAGTCTGGTTGGGATACT 60
|||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1 ATGTCTTTAAGCCTCTACGACAGTGCACACTCACTAGACGGTAGGTCGGGTTGGGATACT 60
Query 61 CCGGTTTTCTCCATGAAAGACTCAAT-GGATCGTAACCCGATGGTCACAGAAGCTTGGGA 119
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 61 CCGGTTTTCTCCATGAAAGACTC-GTCTGACCTTAACCCGATGGTCACAGAAGCTTGGGA 119
Query 120 GGCTCTCTGCCAGTCTCAGGTCTACTTCCGGGGAAAACCGGTAGGAACCATCGCCGCCTA 179
||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 120 GGCTCTCTGCCGGTCTCAGGTCTACTTCCGAGAAAAACCGGTAGGAACAATCGCCGCCTA 179
Query 180 CGACCATGCTTCAGAAGAGGTCTTGAACTATGATCAGGTGTTCGTACGTGATTTTGTACC 239
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CGACCATGCTTCCGAGGAGGTCTTGAACTATGATCAGGTATTCGTACGTGATTTTGTACC 239
Query 240 GAGTGCTCTAGCATTTCTGATGAATGGAGAGCCTGAAATTGTGAAGAACTTTCTCCTGAA 299
||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 240 GAGCGCTCTAGCGTTTCTGATGAAAGGAGAGCCTGACATTGTGAAGAACTTTCTCCTAAA 299
Query 300 GACACTTCATATTCAGGGACAAGACAAAATGATCGACAAGTTCAAGCTTGGTGACGGCGC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 GACACTTCATATTCAGGGACAAGACAAAATGATCGACAAGTTCAAGCTTGGTGATGGCGC 359
Query 360 AATGCCAGCAAGCTTTAAAGTTCTACATAATCCTATCAAGAAGACGGATACGATTATCGC 419
||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 360 AATGCCAGCGAGCTTCAAAGTTCTCCATAACCCTATCAAGAAGACGGATACGATCATCGC 419
Query 420 TGACTTTGGAGAAAGCGCCATCGGGAGAGTGGCTCCAGTCGACTCTGGCTTCTGGTGGAT 479
|||||||||||| ||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct 420 TGACTTTGGAGAGAGCGCTATAGGGAGGGTGGCTCCCGTCGACTCGGGGTTTTGGTGGAT 479
Query 480 CATTCTCCTCCGAGCTTACACTAAGTCTACAGGAGATCATTCTCTAGCAGAGAGACCAGA 539
|||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||
Sbjct 480 CATTCTCCTCCGAGCTTACACTAAGTCTACAGGAGACCATTCTCTATCTGAGAGACCTGA 539
Query 540 GTGCCAAAAGGGAATGAGACTCATACTTTCTTTGTGTCTCTCTGAGGGTTTTGATACTTT 599
|||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct 540 GTGCCAAAAGGGAATGAGGCTCATTCTCTCTTTATGTCTCTCTGAGGGGTTTGATACTTT 599
Query 600 TCCGACTTTGCTTTGCGCAGATGGTTGCTCGATGGTCGATCGTAGAATGGGCATTTACGG 659
|||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 600 TCCGACATTGCTCTGCGCAGACGGTTGCTCCATGGTCGATCGTAGGATGGGCATTTACGG 659
Query 660 CTATCCGATTGAGATCCAAGCCCTCTTTTTCATGGCTCTTCGATCCGCACTCTCAATGCT 719
||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 660 CTATCCGATCGAGATTCAAGCCCTCTTTTTCATGGCTCTTCGATTCGCACTCTCGATGCT 719
Query 720 GAAACATGATTCTGAGGGTAAAGAGTTCATGGAAAAGATAGTGAAGCGGCTGCACGCACT 779
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||
Sbjct 720 GAAACATGATTCTGAGGGTAAAGAGTTTATGGAAAAGATAGTGACGCGGCTTCACGCGCT 779
Query 780 AAGCTTCCATATGAGAAGCTACTTTTGGCTCGATTTCCAGCAGCTCAATGACATTTACCG 839
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGCTTCCACATGAGAAGCTACTTTTGGCTCGATTTCCAGCAGCTCAATGACATTTACCG 839
Query 840 TTACAAGACGGAGGAGTACTCTCACACCGCGGTAAACAAGTTCAACGTAATCCCTGACTC 899
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 840 TTATAAGACGGAGGAATACTCACACACCGCGGTAAACAAGTTCAACGTCATCCCTGACTC 899
Query 900 CATCCCTGATTGGATCTTTGACTTCATGCCTCTCCGAGGTGGCTACTTCGTTGGAAATGT 959
||| || ||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 900 CATTCCGGATTGGATCTTCGACTTCATGCCTCTCAGAGGTGGCTACTTCATTGGAAACGT 959
Query 960 CAGTCCCGCCCGCATGGACTTCAGGTGGTTTGCGTTAGGAAATTGTATCGCAATTCTTTC 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 960 CAGTCCCGCCCGCATGGACTTCAGGTGGTTTGCGTTGGGAAATTGTATCGCAATTATTTC 1019
Query 1020 CTCATTGGCCACACCAGAGCAGTCCATGGCGATCATGGACCTGATTGAGGCCCGGTGGGA 1079
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 CTCATTGGCCACGCCAGAGCAGTCCATGGCCATCATGGACCTGATTGAGGCCCGGTGGGA 1079
Query 1080 AGAACTTGTGGGAGAGATGCCGTTGAAGATATGTTATCCGGCGATGGAGAGTCACGAGTG 1139
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGAACTGGTTGGAGAGATGCCGTTGAAGATATGTTATCCGGCGATGGAGAGTCACGAGTG 1139
Query 1140 GGGGATTGTCACTGGCTGTGACCCTAAGAACACAAGGTGGAGCTACCACAACGGAGGCTC 1199
| | || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 GCGTATCGTCACTGGCTGTGACCCTAAGAACACACGGTGGAGCTACCACAACGGAGGCTC 1199
Query 1200 TTGGCCAGTGCTTCTATGGTTACTAACGGCGGCAAGCATAAAGACTGGACGGCCACAAAT 1259
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1200 TTGGCCAGTGCTTCTATGGTTGCTAACGGCGGCAAGCATAAAGACCGGACGACCACAAAT 1259
Query 1260 AGCACGACGGGCTATAGAGTTGGCGGAGGCACGACTGTTGAAGGATGGATGGCCGGAGTA 1319
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1260 AGCACGACGGGCAATAGAGTTGGCGGAGGCACGACTATTGAAAGATGGATGGCCGGAGTA 1319
Query 1320 CTACGACGGAAAGTCTGGAAGATTCATCGGAAAACAGGCTAGGAAATCTCAGACATGGTC 1379
||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||
Sbjct 1320 CTACGACGGAAAGTCTGGAAGGTTCATCGGAAAACAGGCCAGAAAATTTCAGACATGGTC 1379
Query 1380 AATCGCTGGCTATTTGGTCGCCAAGATGATGATGGATGATCCAACGCATGTGGGAATGAT 1439
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 AATCGCTGGCTATTTGGTGGCCAAGATGATGATGGATGATCCAACGCATGTAGGAATGAT 1439
Query 1440 CTCAATGGAAGAAGAGAAACATATGAAACCTCCTCTTA-GAAGATCTTCTTCTTGGACTT 1498
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1440 CTCAATGGAAGAAGAGAAACATATGAAACCTCCTCTTAAGA-GATCTTCTTCTTGGACTT 1498
Query 1499 AA 1500
||
Sbjct 1499 AA 1500
> Ahg489803 jgi|Araly1|489803|fgenesh2_kg.6__2937__AT4G09510.1
Length=2039
Score = 765 bits (414), Expect = 0.0
Identities = 1061/1371 (77%), Gaps = 54/1371 (4%)
Strand=Plus/Plus
Query 155 AACCGGTAGGAACCATCGCCGCCTACGACCATGCTTCAGAAGAGGTCTTGAACTATGATC 214
|||| || || ||||| || || || |||||||| || || |||||||||||||||||||
Sbjct 544 AACCCGTTGGTACCATTGCAGCTTATGACCATGCCTCCGAGGAGGTCTTGAACTATGATC 603
Query 215 AGGTGTTCGTACGTGATTTTGTACCGAGTGC-TCTAGCATTTCTGATGAATGGAGAGCCT 273
||||||||||||| || |||||||||||||| | | |||||||||||||||||||||||
Sbjct 604 AGGTGTTCGTACGAGACTTTGTACCGAGTGCAT-TGGCATTTCTGATGAATGGAGAGCCA 662
Query 274 GAAATTGTGAAGAACTTTCTC-CTGAAGACACTTCATATTCAGGGACAAGACAAAATGAT 332
|| || ||||| ||||| || || ||||||||||| |||| || || ||| | |
Sbjct 663 GATATAGTGAAAAACTT-CTTGCTCAAGACACTTCAGCTTCAAGGTTGGGAGAAACGGGT 721
Query 333 CGACAAGTTCAAGCTTGGTGACGGCGCAATGCCAGCAAGCTTTAAAGTT-CTACATAATC 391
||| ||||||||| || || || | |||||||| || ||| ||| | || ||| |||
Sbjct 722 TGACCGGTTCAAGCTCGGGGAAGGTGTTATGCCAGCGAG-TTTCAAGGTGCTTCATGATC 780
Query 392 CTA-TCAAG-AAGACGGATACGATTATCGCTGACTTT-GGAGAAAGCGCCATCGGGAGAG 448
| | || | || || || || || | || || ||| || |||||||| || || ||||
Sbjct 781 C-AGTCC-GTAAAACCGACACAATCGTTGCGGA-TTTCGGGGAAAGCGCTATAGGAAGAG 837
Query 449 TGGCTCCAGTCGACTCTGGCTTCTGGTGGATCATTCTCCTCCGAGCTTACACTAAGTCTA 508
| || || || || || || |||||||||||||| || ||||| |||||||| || ||||
Sbjct 838 TAGCACCGGTGGATTCAGGATTCTGGTGGATCATACTTCTCCGCGCTTACACAAAATCTA 897
Query 509 CAGGAGATCATT--CTCTAG-CAGAGAGACCAGAGTGCCAAAAGGGAATGAGACTCATAC 565
| |||||| || |||| | | |||| ||||||||| || | ||||||| | || ||||
Sbjct 898 CCGGAGAT--TTGACTCT-GTCTGAGACACCAGAGTGTCAGAGGGGAATGCGGCTTATAC 954
Query 566 TTTCTTTGTGTCTC-TCTGA-GGGTTTTGATACTTTTCCGACTTTGCTTTGCGCAGATGG 623
| || | || || || || |||||| || ||||| || || ||||||| || || ||
Sbjct 955 TCTCACTCTG-CTTATCCGAAGGGTTT-GACACTTTCCCTACACTGCTTTGTGCTGACGG 1012
Query 624 TTGCTCGATGGTCGATCGTAGAATGGGCATTTACGGCTATCCGATTGAGATCCAAGCCCT 683
||| || ||||| ||| | |||||||| |||| || |||||||| ||||| ||||| ||
Sbjct 1013 TTGTTCTATGGTTGATAGAAGAATGGGTGTTTATGGATATCCGATAGAGATTCAAGCTCT 1072
Query 684 CTTTTTCATGGCTCTTCGATCCGCACTC-TCAATGCTGAAACATGATTCTGAGGGTAAAG 742
||||||||||| || ||| ||| || || ||||| |||| ||| || |||| ||
Sbjct 1073 GTTTTTCATGGCGCTGAGATGCGC-CTTATCGATGCTTAAACCTGACGAGGAAGGTAGAG 1131
Query 743 AGTTCATGGAAAAGA-TAGTGAAGCGGCTGCACGCACTAAGCTTCCATATGAGAAGCTAC 801
||||||| |||| || | |||||||| || ||||| || || ||||||||| | || |||
Sbjct 1132 AGTTCATAGAAA-GAATTGTGAAGCGACTTCACGCGCTGAGTTTCCATATGCGCAGTTAC 1190
Query 802 TTTTGGCTCGA-TTTCCAGCAGCTCAATGACATTTACCGTTACAAGACGGAGGAGTACTC 860
||||||||||| |||| |||| |||||||| || ||| | ||||||||||||||||||||
Sbjct 1191 TTTTGGCTCGACTTTC-AGCAACTCAATGATATCTACAGGTACAAGACGGAGGAGTACTC 1249
Query 861 TCACACCGCGGTAAACAAGTTCAACGTAATCCCTGACTCCATCCCTGATTGGATCTTTGA 920
||||| ||||| ||||| |||||||| || || ||||| || || |||||| | |||||
Sbjct 1250 ACACACGGCGGTGAACAAATTCAACGTGATGCCGGACTCGATACCAGATTGGGTTTTTGA 1309
Query 921 CTTCATGCCTCTCCGAGGTGGCTACTTCGTTGGAAATGTCAGTCCCG-CCCGCATGGACT 979
|||||||||||| || || || || || || || ||||| || |||| |||| ||||| |
Sbjct 1310 CTTCATGCCTCTTCGTGGAGGATATTTTGTCGGCAATGTAAG-CCCGGCCCGTATGGATT 1368
Query 980 TCAGGTGGTTTGCGTTAGGAAATTGTATCGCAATTCTTTCCTCAT-TGGCCACACCAGAG 1038
| ||||||||| | |||||||| ||| || | || ||||| || | | || || || ||
Sbjct 1369 TTAGGTGGTTTTCCTTAGGAAACTGTGTCTCTATCCTTTCTTC-TCTAGCAACTCCGGAT 1427
Query 1039 CAGTCCATGGCGATCATGGACCTGATTGAGGC-CCGGTGGGAAGAACTTGTGGGAGAGAT 1097
||||| ||||| || |||||||| | ||| | ||| ||||| || || || || |||||
Sbjct 1428 CAGTCAATGGCTATTATGGACCTCCTCGAG-CACCGTTGGGAGGAGCTAGTAGGCGAGAT 1486
Query 1098 GCCG-TTGAAGATATGTTATCCG-GCGATGGAGAGTCACGAGTGGGGGATTGTCACTGGC 1155
|||| || |||||||| || || || || ||||| ||||||||| |||||||||||||
Sbjct 1487 GCCGCTT-AAGATATGCTACCCTTGC-ATTGAGAGCCACGAGTGGCGGATTGTCACTGGT 1544
Query 1156 TGTGACCCTAAGAACACAAGGTGGAGCTACCACAACGGAGGCTCTTGGCCAGTGCTTCTA 1215
||||| ||||||||||| |||||||||||||||||||| || ||||||||||| || |
Sbjct 1545 TGTGATCCTAAGAACACTAGGTGGAGCTACCACAACGGCGGATCTTGGCCAGTA-TTATT 1603
Query 1216 -TGGTTACTAACGGCGGCAAGCATAAAGACTGGACGGCCACAAATAGC-ACGACGGGCTA 1273
||| || || |||||| |||| ||||| || ||||| ||||| || | |||| || |
Sbjct 1604 GTGGACGCTGACAGCGGCATGCATCAAGACAGGCCGGCCTCAAATCGCGA-GACGTGCGA 1662
Query 1274 TAGAGT-TGGCGGAGGCACGACTGTT--GAAGGATGGATGGCCGGAGTACTACGACGGAA 1330
| || | | || |||| || || | || | |||||||| ||||| || || |
Sbjct 1663 TTGA-TCTAATTGAATCACGGCTACACCGA-G-ATTGCTGGCCGGAATACTATGATGGTA 1719
Query 1331 AGTCT-GGAAGATTCATCGGAAAACAGGCTAGGAAAT-CTCAGACATGGTCAATCGCTGG 1388
|| | ||||| | | | ||||||||||||||||||| | ||||| ||||||||||| ||
Sbjct 1720 AG-CAAGGAAGGTACGTTGGAAAACAGGCTAGGAAATAC-CAGACTTGGTCAATCGCGGG 1777
Query 1389 CTATTTGGTCGCCAAGATGATGATGGATGATCCAACGCATGTGGGAATGATCTCAATGGA 1448
|| ||||| || ||||||||| | || ||||| | ||| | ||||||||||| | ||
Sbjct 1778 TTACTTGGTTGCGAAGATGATGCTTGAAGATCCTTCACATATCGGAATGATCTCTCTTGA 1837
Query 1449 AGAAGAGAAACATATGAAACCTCCTCTTA-GAAGATCTTCTTCTTGGACTT 1498
|||||| ||||| ||||||||| | | | || ||||| ||||||||||||
Sbjct 1838 AGAAGATAAACAGATGAAACCTGTTATCAAGA-GATCTGCTTCTTGGACTT 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5