BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72010.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926560 jgi|Araly1|926560|scaffold_202121.1 1960 0.0
> Ahg926560 jgi|Araly1|926560|scaffold_202121.1
Length=1409
Score = 1960 bits (1061), Expect = 0.0
Identities = 1320/1438 (92%), Gaps = 45/1438 (3%)
Strand=Plus/Plus
Query 1 ATAGTTTCTTCCTGCAATCACACCATTCATATCCACTTGTTTTTATCCT-TCTCAATCAT 59
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 6 ATAGTTTCTTCCTGCAATCACACCATTCATATCCACTTGTTTTTAT-CTCTCTCAATCA- 63
Query 60 tctctcttctctctccctctctgttctcAAACTCCATTTTAGTAGCAAGCTTAGATCTCC 119
| |||| ||||||||||||||||||| ||||||||| ||| ||| |||||||| | |
Sbjct 64 T-TCTC-TCTCTCTCCCTCTCTGTTCACAAACTCCA--TTA-TAG-TAGCTTAGA--T-C 114
Query 120 TCCTTCCACAGTCACTTTCTCTTCTTTCTCTGCTTTTGTTTCTTCAATCGATTTGCTTCA 179
||||||||||||||| | |||||| || | | | ||||||||||||| ||||||||
Sbjct 115 TCCTTCCACAGTCAC-TGCTCTTC-TT-T-T-C-----TTTCTTCAATCGA-TTGCTTCA 163
Query 180 GATTTCCCCAGATTATATAGAATTCGATGTCAAGACACAGAATTCACATGGGTTTTGTCT 239
|||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 164 GATTTCCCCAGATTTTAGAGAATTCGATATCAAGACTCAGAATTCACATGGGTTTTGTTT 223
Query 240 AAAAATCA-TAAAAATCATATCTTTTTACGGATTTG-AA---G-ATGAATCAGAATTCCT 293
|||||||| | | | | |||| | || | | || | | |||||||||||||
Sbjct 224 AAAAATCACTTCTTTTTA-AGGTTTTGA-AGA-TGGAAATTCGCACCAATCAGAATTCCT 280
Query 294 CTGTTGCGGAGGCGACGCTTCAGCTTAATTCCGGTGAAAAACCATCGCCGGGATCGATTC 353
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 281 CTGTTGCGGAGGCGACGCTTCAGCTTAATTCCGGTGATAAACCGTCGCCGGGATCAATTC 340
Query 354 CGTTTATCTCCTCTGGTCAACACGGAAACATAAGCACTTCAGCGACGAGTTCGACAAGCA 413
| ||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 CTTTTATCT-C-C-GGTCAACACGGAAACATAAGCACTTCAGCGACGAGTTCGACTAGCA 397
Query 414 CAAGCTCAGGTAGTGCTCTTGCCGTAGTTAAATCCGCCGTGAAAAAACCAACTAAAGATC 473
| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 398 CGAGTTCAGGTAGTGCTCTTGCCGTAGTTAAATCCGCCGTGAAAAAGCCGACTAAAGATC 457
Query 474 GGCATACTAAAGTCGATGGTCGTGGACGGCGAATTCGTATGCCGGCGATGTGCGCCGCTA 533
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GGCACACGAAAGTCGATGGCCGTGGACGGCGAATTCGTATGCCGGCGATGTGCGCCGCTA 517
Query 534 GAGTTTTTCAG-TTAACAAGAGAGTTAGGTCATAAATCTGATGGAGAAACCATCGAGTGG 592
||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 518 GAGTTTTTCAGCTT-ACTAGAGAGTTAGGTCATAAATCTGATGGAGAGACCATCGAGTGG 576
Query 593 CTTCTCCAACAAGCTGAGCCAGCTATCATCGCTTCTACTGGTACTGGTACGATCCCGGCG 652
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 577 CTTCTCCAACAAGCTGAGCCAGCTATCATCGCTTCTACAGGTACCGGTACGATTCCGGCG 636
Query 653 AATTTCTCAACACTT-AACGCTTCTTTACGCAGTGGTGGTGGCTCCACCTTGTTTTCTCA 711
|| |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 637 AACTTCTCAAC-GTTAAACGCCTCTTTACGCAGTGGTGGCGGCTCCACCTTATTTTCTCA 695
Query 712 GGCGTCGAAA-TCTTCTTCTTCGCCACTCTCGTTTCATAGCACTGGAATGTCTCTTTATG 770
| |||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 696 GTCGTC-AAAGTCTTCTTCTTCGCCGCTCTCGTTTCATAGCACTGGAATGTCTCTTTATG 754
Query 771 AAGACAATAACGGTACTAACGGATCATCGGTAGATCCTTCTAGGAAGTTACTGAATTCAG 830
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 755 AAGATAATAACGGGACTAACGGATCATCGGTAGATCCTTCTAGGAAGTTGCTGAATTCAG 814
Query 831 CCGCAAACGCGGCTGTTTTCGGTTTTCATCATCAGATGTATCCACCAATAATGTCGACGG 890
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 815 CCGCAAACGCGGCTGTTTTCGGTTTTCATCATCAGATGTATCCGCCAATAATGTCGACGG 874
Query 891 AGAGAAATCCGAACACTTTAGTGAAACCTTATAGAGAAGATTACTTTAAGGAGCCGAGTT 950
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 875 AGAGAAATCCGAGTAATTTAGTGAAACCTTATAGAGAAGATTACTTTAAGGAGCCGAGCT 934
Query 951 CTGCAGCGGAACCAAGCGAGAGTTCTCAGAAAGCGAGTCAGTTTCAGGAGCAAGAGTTA- 1009
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 935 CTGCAGCGGAACCAAGCGAGAGTTCTCAGAAAGCGAGTCAGTTTCAGGATCAAGAGTTAG 994
Query 1010 GCTCAGGGTCGTGGGACGGCTAATGTGGTGCCTCAACCTATGTGGGCGGTTGCGCCAGGG 1069
| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 995 GTTC-GGGTCGTGGGACGGCTAATGTGGTGCCTCAACCTATGTGGGCTGTTGCGCCGGGG 1053
Query 1070 ACTACGAATGGAGGTAGTGCGTTCTGGATGCTTCCGATGAGCGGTTCGGGTGGGCGGGAG 1129
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ACTACGAATGGAGGAAGTGCGTTCTGGATGCTTCCGATGAGCGGTTCGGGTGGGCGGGAG 1113
Query 1130 CAGATGCAGCAGCAGCCTGGTCACCAAATGTGGGCGTTTAATCCAGGGAATTATCCAGTT 1189
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1114 CAGTTGCAGCAGCAGCCGGGTCACCAAATGTGGGCGTTTAATCCAGGGAATTATCCGGTT 1173
Query 1190 GGGACAGGACGAGTAGTAACTGCACCAATGGGGTCAATGATGTTGGGAGGTCAACAGCTA 1249
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GGGACAGGAAGAGTAGTAACCGCACCAATGGGGTCAATGATGTTGGGAGGTCAACAGCTA 1233
Query 1250 GGATTAGGAGTGGCAGAGGGCAACATGGCGGCTGCAATGCGTGGCAGTAGAGGCGATGGT 1309
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1234 GGATTAGGAGTGGCAGAGAACAATATGGCGGCTGCAATGCGTGGCAGTAGAGGCGATGGT 1293
Query 1310 TTGGCCATGACTCTAGATCAACATCAGCATCAGCTCCAACATCAAGAGCCAAACCAGAGT 1369
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1294 TTGGCCATGACTCTGGATCAACATCAGCATCAGCTCCAACATCAAGAGCCAAGCCAGACT 1353
Query 1370 CAAGCTAGTGAAAATGGTGGTGATGACAAAAAGTGATCAATCCTTTTCTCTAGTTCCA 1427
|||||||||||||| ||||||||||||||||||||| ||||| | ||||| | |||||
Sbjct 1354 CAAGCTAGTGAAAACGGTGGTGATGACAAAAAGTGACCAATCGTCTTCTC-A-TTCCA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5