BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72020.1
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339423 jgi|Araly1|339423|fgenesh1_pg.C_scaffold_2001522 333 9e-91
> Ahg339423 jgi|Araly1|339423|fgenesh1_pg.C_scaffold_2001522
Length=384
Score = 333 bits (180), Expect = 9e-91
Identities = 200/209 (96%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 177 GTGACTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACATGGTGGT 236
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 166 GTGAGTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACA---TGAT 222
Query 237 TACGATGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA 296
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TACGACGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA 282
Query 297 GCTCTCAAGATGTCTCTCGGTGTATTCACCGCTTTCAGCATCGGTGTTGGGGTTCCTATC 356
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 283 GCTCTCAAGATGTCTCTCGGTGTCTTTACCGCTTTCAGCATCGGTGTCGGGGTTCCTATC 342
Query 357 TTCGCAGTCGTTTTCCAGCAGAGGAAGAC 385
|||||||||||||||||||||||||||||
Sbjct 343 TTCGCAGTCGTTTTCCAGCAGAGGAAGAC 371
Score = 119 bits (64), Expect = 3e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 105 ATGGCGTTGAGCACCAGCATCAGATCTGTATCTAAGATCATTGCTTCTTCCGAAGCATCA 164
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGTTGAGCACCAGCATCAGATCTGTCTCTAAGATCATTGCTTCATCCGAAGCATCA 60
Query 165 GTCTCCAGATCTG 177
|| ||||||||||
Sbjct 61 GTTTCCAGATCTG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22988118951
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5