BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72030.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476333 jgi|Araly1|476333|fgenesh2_kg.2__1463__AT1G72030.1 1245 0.0
> Ahg476333 jgi|Araly1|476333|fgenesh2_kg.2__1463__AT1G72030.1
Length=864
Score = 1245 bits (674), Expect = 0.0
Identities = 789/845 (93%), Gaps = 5/845 (1%)
Strand=Plus/Plus
Query 1 GAAAAATGCTAGAAAAATAAACATGGGTCACTTGCCACAGAGCCTCTACT---CCGCCGC 57
|||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct 1 GAAAAATGCTAGAAAAATAAACATGGCTCACTTGTCACAGAGCCTCTACTCCGCCGCCGC 60
Query 58 TGGACCAAAGTTTCCATATCCTGGAAGCTCCGGTCTAGGAGTAGATCAACGGAAGCTGAC 117
| ||||||||||||||||||||||||||| ||| | |||| || ||| || |||||||||
Sbjct 61 TAGACCAAAGTTTCCATATCCTGGAAGCTGCGGCCAAGGAATATATCGACAGAAGCTGAC 120
Query 118 GTGGAGCCGCTTCCCGGTGTTCCTACGGTGCGCGTCGACGGAGTCGTTAACGAGTTTGAC 177
|||||||||||| |||||| || |||||||||| || || || ||||||||||||||||
Sbjct 121 GTGGAGCCGCTTTCCGGTGATCGTACGGTGCGCATCTACCGAACCGTTAACGAGTTTGAC 180
Query 178 TCAGAATAATGCGGCGGAGATAGAGTTGAAGTATCTGGTGAGTCAACACGGGTGGGACGT 237
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 181 TCAGAATAATGCGGCGGAGATAGAGTTAAAGTATCTAGTGAGTCAACACGGGTGGGACGT 240
Query 238 GAGGAGATTGAATAGAGACGACGAGGATGAGATCAGGAGAGTGTCTCTTGTTCAAGCCGA 297
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 GAGGAGATTGAATAGAGACGACGAGGATGAGATCAGGAGAGTGTCTCTGGTTCAAGCCGA 300
Query 298 AGCTTTCCACATCCCTCTTGCTCtttttgatgattttttcttcatgttttttCAGGCAGA 357
|||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 301 AGCTTTCCACATCCCTCTCGCTCTTTTTAATGATTTTTTCTTTATGTTTTTTCAGGCAGA 360
Query 358 GGTTCTATCAGCACTTCTTTACAAACTAAAGAATTCACCACCTGACAGATATGCATGTCT 417
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GGTTCTCTCAGCACTTCTTTACAAACTAAAGAATTCACCACCAGACAGATATGCATGTCT 420
Query 418 CGTGGCGGAGCAAACAAGTGAAACTGAAACTTTGTCGAGCTCAAGTGTTGTCGGAGTAGT 477
||||||||||||||| || || | ||||||| |||||| |||||||| |||||||||||
Sbjct 421 CGTGGCGGAGCAAACGAGCCAACCAGAAACTTCGTCGAGTTCAAGTGTCGTCGGAGTAGT 480
Query 478 TGATGTAACAGCTCAAACT-GAAAGTTCAGTACTTCGCTATTTTCCGGGCGTCGAAGAAT 536
|||||| |||||||||| | ||||||||||||||| || |||||||||||||||||||||
Sbjct 481 TGATGTCACAGCTCAAA-TGGAAAGTTCAGTACTTTGCCATTTTCCGGGCGTCGAAGAAT 539
Query 537 ATCTATACGTCTCGGGTTTAGCTGTCTCAAAATCTCAAAGGAGAAAGAAGATGGCAAGTA 596
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 540 ATCTTTACGTCTCGGGTTTAGCCGTCTCAAAAGCTCAAAGGAGAAAGAAGATGGCAAGTA 599
Query 597 CATTGTTAAAGGCATGTGATGTTTTGTGTTACTTGTGGGGTTTCAAGCTTCTTGCTCTAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATTGTTAAAGGCATGTGATGTTTTGTGTTACTTGTGGGGTTTCAAGCTTCTTGCTCTAA 659
Query 657 GAGCTTATGAAGACGATGCAGCTGCTAGAAATCTTTACTCGAATGCCGGCTACAGTGTGG 716
|||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 660 GAGCTTATGAAGACGATGCAGCCGCTAGAAATCTTTACTCTAATGCGGGTTACAGCGTGG 719
Query 717 TCGAGACTGACCCGTTGTGGACCTCTACTTGGATAGGCAGAAAACGTCGCGTTCTTATGA 776
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 720 TCGAGACTGACCCGTTGTGGACCTCTACTTGGATAGGCAGAAAGCGCCGCGTTCTTATGA 779
Query 777 GTAAACGCTTTTCTTAGGCGTTTTCTTCATGTACATTTTGGTTAAAACAATAAACACACT 836
|||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 780 CTAAACGCTTTTCGTAGGCGTTTTTTTCATGTAAATTTTGGTTAAAACAATAAACACACT 839
Query 837 ACCAT 841
|||||
Sbjct 840 ACCAT 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5