BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72040.1
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926563 jgi|Araly1|926563|scaffold_202124.1 2778 0.0
> Ahg926563 jgi|Araly1|926563|scaffold_202124.1
Length=1801
Score = 2778 bits (1504), Expect = 0.0
Identities = 1708/1804 (95%), Gaps = 23/1804 (1%)
Strand=Plus/Plus
Query 74 ATGCTCGTGTAAACGGAAACGATGCAGAAGATTCTGTGCAAAAGTACCACTTCTTCAACC 133
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTCGTGT-AACGGAAACGATGCAGAAGATTCTGTGCAAAAGTACCACTTCTTCAACC 59
Query 134 CCTGTTCTCTCTACGCCGGTGAACTCTCTCGCCGCCGGTTTTATCTCTCTAGGGTTTAAG 193
|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 60 CCTGTTCTCTCTACTCCGGTGAACTCTTTCGCCACCGGTTTTATCTCTCTAGGGTTTAAG 119
Query 194 ACCCCCGTTAAAAATCTCCCTCCTTGTTCTACTACTAAACCTCTCTCCACTTGTTTCTTC 253
|||||||| ||||||||| |||||||||| | | | ||||||||||| ||||||||||||
Sbjct 120 ACCCCCGTCAAAAATCTCACTCCTTGTTCCAGTCCCAAACCTCTCTCTACTTGTTTCTTC 179
Query 254 TCTACTTCCGCTATGCCGACCACAACGGCTTCTGTTTCTTCAGGCGGTGTTGGTTTCTCT 313
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 180 TCTACTTCCGCTATGCCGACGAGAACGGCTTCTCTTTCTTCAGGCGGTGTTGGTTTCTCT 239
Query 314 GCTTATCTACAGAGGACTGTTCATAAACCGGCACCGGCGTCTGTTCGGTTCTCAACAGCT 373
|||||||||||||||| |||| ||| |||||| |||||||| || |||||||||||||||
Sbjct 240 GCTTATCTACAGAGGAGTGTTAATAGACCGGCGCCGGCGTCGGTACGGTTCTCAACAGCT 299
Query 374 GGTTACCGGACTTGCCGGTGTTCAATTGACGGTACGAACCGGGCTTGGGTTGGTCGAACT 433
| |||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 300 GCTTACCGGACTTGTCGGTGTTCAATCGACGGTACGAACGGGGCTTGGGTCGGTCGAACC 359
Query 434 GGGTCTTGGCGTGCGTTGTTTTGTTCAGACTCTACTGGTGGTTTAACCCCGGTTAATGCT 493
||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 360 GGGACTTGGCGTGCTTTGTTTTGCTCAGACTCTACTGGTGGCTTAACCCCGGTTAATGCT 419
Query 494 ACTGCTGGAGCAGTGGTTGAAAGCG-AGGAAGAGTCTGACGGAGAAGAT---GA--AG-A 546
||||||||||| |||||||| |||| ||| || ||||||||||||||| || || |
Sbjct 420 ACTGCTGGAGCTGTGGTTGAGAGCGAAGG-TGACTCTGACGGAGAAGATGAAGAGGAGAA 478
Query 547 CG---A-G----GA--GA-AA-GATGAGAAGCCTGTGAGGATGAACCGTAGAAACCGGAG 594
| | | || || || | ||||||||| |||||||||| ||||||||| |||||
Sbjct 479 AGATAATGATTCGACGGATAAGGTTGAGAAGCCAGTGAGGATGAGCCGTAGAAATCGGAG 538
Query 595 CTCTAGTGGAAGTGGTGAGTTTGTTGGTAATCCAGATTTGCTGAAGATTCCTGGAGTTGG 654
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 CTCTAATGGAAGTGGTGAATTTGTTGGTAATCCAGATTTGCTTAAGATTCCTGGAGTTGG 598
Query 655 TTTAAGGAATCAGAGAAAGCTTGTTGATAATGGGATTGGTGATGTTGCAGAGCTCAAGAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTAAGGAATCAGAGAAAGCTTGTTGATAATGGGATTGGTGATGTTGCAGAGCTCAAGAA 658
Query 715 GCTTTATAAGGATAAGTTTTGGAAGGCTAGTCAGAAGATGGTTGATTATCTTAGGAGCTC 774
||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 659 GCTCTATAAAGATAAGTTTTGGAAAGCAAGTCAGAAGATGGTTGATTATCTTAGGAGCTC 718
Query 775 TGTTGGGATTATACATAGAAACCATGCGGAGAGTATAACAACGTTTATTAAAGAGAGTGT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTTGGGATTATACATAGAAACCATGCGGAGAGTATAACAACGTTTATTAAAGAGAGTGT 778
Query 835 GGATGATGAGCTTAAGGATTCTGGCCCTGAACCTAATCTAAATGTGAAGAAACGTTTGAC 894
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 GGATGATGAGCTAAAGGATTCTGGCCCTGAACCTAATGTAAATGTGAAGAAACGTTTGAC 838
Query 895 GTTTTGTGTTGAAGGGAACATCAGTGTTGGTAAATCAACTTTTCTTCAGAGGATAGCGAA 954
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTTTTGTGTTGAAGGGAACATTAGTGTTGGTAAATCAACTTTTCTTCAGAGGATAGCGAA 898
Query 955 TGAGACTGTTGAGTTACAAGACCTTGTTGAGATTGTTCCTGAGCCAGTTGATAAGTGGCA 1014
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAGACGGTTGAGTTACAAGACCTTGTTGAGATTGTTCCTGAGCCAGTTGATAAGTGGCA 958
Query 1015 AGATGTTGGACCTGACCATTTCAATATATTGGATGCTTTCTACTCTGAGCCTCAGAGGTA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGATGTTGGACCTGACCATTTCAATATATTGGATGCTTTCTACTCTGAGCCTCAGAGGTA 1018
Query 1075 TGCTTATACTTTCCAGAACTATGTGTTTGTCACTCGGCTGATGCAGGAGAAAGAGTCTGC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCTTATACTTTCCAGAACTATGTGTTTGTCACTCGGCTGATGCAGGAGAAAGAGTCTGC 1078
Query 1135 TTCTGGGGTTAAACCTCTCAGGTTGATGGAAAGGAGTGTCTTCAGTGACCGAATGGTGTT 1194
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1079 TTCTGGGGTTAAACCTCTCAGGCTGATGGAAAGGAGTGTCTTCAGTGACAGAATGGTGTT 1138
Query 1195 TGTGCGTGCGGTTCATGAAGCGAAATGGATGAATGAGATGGAGATCAGCATTTACGACTC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 TGTGCGTGCGGTTCATGAAGCGAAATGGATGAATGAGATGGAGATCAGCATCTACGACTC 1198
Query 1255 TTGGTTTGATCCGGTTGTCTCTTCTTTACCTGGACTTGTTCCTGATGGGTTTATATACTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTGGTTTGATCCGGTTGTCTCTTCTTTACCTGGACTTGTTCCTGATGGGTTTATATACTT 1258
Query 1315 AAGGGCGAGTCCAGACACTTGCCACAAGCGAATGATGCTCAGGAAACGAGCAGAAGAAGG 1374
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 AAGGGCAAGTCCAGACACTTGCCACAAGCGGATGATGCTCAGGAAACGAGCAGAAGAAGG 1318
Query 1375 CGGAGTCTCTCTGAAATACCTCCAAGATTTGCACGAGAAGCACGAGAGCTGGCTGCTTCC 1434
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1319 TGGAGTCTCGCTGAAATACCTCCAAGATTTGCACGAGAAGCACGAGAGCTGGCTACT-CC 1377
Query 1435 C-TTTGAGAGCGGAAACCATGGTGTATTGTCTGTTAGTAGACCATCTTTACACATGGACA 1493
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1378 CGTTTGAGAGCGGAAACCATGGTGTATTGTCTGTTAGTAGGCCATCTTTACACATGGACA 1437
Query 1494 ACTCTCTGCATCCTGATATAAAGGACCGTGTCTTTTACTTGGAAGGAAATCATATGCATT 1553
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACTCTCTGCATCCTGATATAAAAGACCGTGTCTTTTACTTGGAAGGAAATCATATGCATT 1497
Query 1554 CTAGTATCCAGAAGGTCCCTGCTCTGGTTTTGGACTGTGAACCCAATATCGACTTCAGCC 1613
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1498 CTAGTATCCAGAAGGTCCCTGCTCTGGTTTTGGACTGTGAACCTAATATCGACTTCAGCA 1557
Query 1614 GGGATATTGAAGCAAAGACACAGTATGCACGCCAGGTCGCTGAGTTCTTTGAGTTTGTGA 1673
||||| ||||||||||| ||||||||||||||| || |||||||||||||| |||||||
Sbjct 1558 AGGATACTGAAGCAAAGAAACAGTATGCACGCCAAGTTGCTGAGTTCTTTGAATTTGTGA 1617
Query 1674 AGAAGAAGCAAGAAACATCTACAGAGAAGAGCAACAGTCAGTCGCCGGTACTGCTACCAC 1733
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1618 AGAAGAAGCAAGAAACATCTACAGAGAAGAGCAACAGTCAGTCACCGGTACTGCTACCGC 1677
Query 1734 ATCAGAATGGAGGTCTCTGGATGGGACCAGCAGGCAATCATGTCCCGGGATTAGATCTCC 1793
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1678 ATCAGAATGGCGGTCTCTGGATGGGACCAGCAGGCAATCATGTCCCGGGATTAGAACTCC 1737
Query 1794 CGCCTCTAGATCTCAAGTCACTCCTCACTAGACCGTCTGCGTGACTGTCCATTCACTGAC 1853
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1738 CGCCTCTAGATCTCAAGTCACTCCTCACCAGACCGTCTGCGTGACTGTCCATTCTCTGAC 1797
Query 1854 TCTG 1857
||||
Sbjct 1798 TCTG 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79075348620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5