BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72050.2
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476336 jgi|Araly1|476336|fgenesh2_kg.2__1466__AT1G72050.2 1027 0.0
> Ahg476336 jgi|Araly1|476336|fgenesh2_kg.2__1466__AT1G72050.2
Length=1312
Score = 1027 bits (556), Expect = 0.0
Identities = 758/852 (89%), Gaps = 27/852 (3%)
Strand=Plus/Plus
Query 519 TGATAAGGAAAAAT-CTGGT-AGTGGCGGTTGTGAGAAGGAAAATGAAGGGAATGGCGGA 576
|||||||| | | | ||||| || |||| | |||| |||||||||| || ||||| ||
Sbjct 459 TGATAAGG-ACACTACTGGTAAG-GGCGATAGTGATAAGGAAAATGCTGGTAATGG-TGA 515
Query 577 -AGTGGTAAGGACAATAATGGTAATGGCGATTCTC-AGCCTGCGGAGTGTTCAACTGGTC 634
|||||||| ||||| | ||||||||||||||||| | ||| | || |||||||||||||
Sbjct 516 TAGTGGTAAAGACAACACTGGTAATGGCGATTCTCAACCCT-CTGAATGTTCAACTGGTC 574
Query 635 AGAAGCAGGTTGTCTGCAAAGAAATTGGTTGTGGAAAAGCCTTTAAGTATCCTTCACAGC 694
||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 575 AGAAGAAGCTTGTCTGCAAAGAAATTGGTTGTGGGAAAGCCTTTAAGTATCCTTCACAGC 634
Query 695 TTCAAAAGCATCAGGATTCTCATGTGAAATTAGACTCTGTGGAGGCATTTTGTTCCGAGC 754
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 635 TACAAAAGCATCAGGATTCTCATGTGAAATTGGACTCTGTGGAGGCTTTTTGTTCCGAGC 694
Query 755 CTGGGTGTATGAAGTACTTTACCAACGAAGAATGCCTCAAGTCACACATAAGATCCTGTC 814
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 695 CTGGGTGTATGAAGTACTTTACAAACGAAGAATGCCTCAAGGCACACATAAGATCCTGCC 754
Query 815 ATCAGCACATCAACTGTGAGATATGTGGTTCTAAGCAT-TTGAAAAAGAACATCAAGAGA 873
||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||
Sbjct 755 ATCAGCACATCAACTGTGACATATGTGGCTCTAAGCATCTT-AAAAAGAACATCAAGAGA 813
Query 874 CATCTACGGACTCATGATGAAGATTCCTCACCAGGAGAAATCAAGTGTGAAGTTGAGGGT 933
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 814 CATCTACGGACCCATGATGAAGATTCCTCACCAGGAGAATTCAAGTGTGAAGTTGAGGGT 873
Query 934 TGCTCTTCGACTTTCTCCAAGGCTTCTAATCTTCAGAAACACATGAAAGCAGTGCACGAT 993
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 874 TGCTCTTCAACTTTCTCAAAGGCTTCTAATCTTCAGAAACACGTGAAAGCAGTGCATGAG 933
Query 994 GATATACGTCCCTTTGTCTGTGGCTTTCCCGGTTGTGGCATGAGATTTGCTTACAAACAT 1053
||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 934 GATTTACGTCCCTTTGTCTGCGGTTTTCCAGGTTGTGGCATGAGATTTGCTTACAAACAT 993
Query 1054 GTCAGAAACAAGCACGAGAATTCCGGGTATCACGTATATACCTGCGGTGATTTTGTCGAA 1113
||||||||||| ||||||||||| || | |||||| |||||||||||||||||||| |||
Sbjct 994 GTCAGAAACAATCACGAGAATTCTGGATGTCACGTTTATACCTGCGGTGATTTTGTTGAA 1053
Query 1114 ACTGATGAAGATTTCACTTCAAGACCGAGAGGTGGACTAAAGAGGAAACAAGTTACTGCG 1173
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1054 ACTGATGAAGATTTCACCTCAAGACCGAGAGGTGGACTAAAGAGGAAGCAAGTTACAGCG 1113
Query 1174 GAAATGCTGGTACGAAAGAGAGTCATGCCTCCTCGGTTTGATGCAGAAGAACACGAAACT 1233
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||
Sbjct 1114 GAAATGCTGGTACGAAAGAGGGTCATGCCTCCCCGGTTTGATTCAGAAGAACATGAGACT 1173
Query 1234 TGCTAGTAGT--GTCCAAGCCTTA-ATT-ATATTTTCTGTCTTAAGATAAGT-GAA-G-T 1286
|||||| ||| || ||| | || | | ||| | | ||||| | | | | |
Sbjct 1174 TGCTAGAAGTATGTACAAAAGA-AGATCCAGAA---CTG-CAGACGATAA-TAGTATGGT 1227
Query 1287 AGTTTTGTGTAAAGTTCTTTTTGTTTGTGTGTTGGTAGGAAGAAATATAGAACTACAATA 1346
|||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||
Sbjct 1228 -GTTTTGTGTAAAGTTCTTTTTGTTTGTGTGTTAG-A--AAGAAATATAGAACGACAATA 1283
Query 1347 GTAGGTAGTAAT 1358
||| ||||||||
Sbjct 1284 GTAAGTAGTAAT 1295
Score = 728 bits (394), Expect = 0.0
Identities = 496/546 (91%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAAGAAGCTAAAGTTGATGTGAAGACTTCGGCGAAGAAGGATATACGCAATTAT 60
|||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| || |||
Sbjct 1 ATGGCGGAAGAAGCTAAAATTGATATAAAGACGTCGGCGAAGAAGGACATACGAAACTAT 60
Query 61 CTATGCCAGTATTGCGGAATCAGCAGATCTAAAAACTATCTCATCACTAAACACATCCAA 120
|| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 61 CTCTGCCAGTATTGCGGAATCAGCAGATCGAAAAAGTATCTCATCACTTCACACATCCAA 120
Query 121 TCTCATCATCAGATGGAACTTGAAGAGGAAAGAGATGATGAAGCTTGTGAGGTTGATGAG 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TCTCATCATCAGATGGAACTTGAAGAGGAAAGAGATGATGAAGATTGTGAGGTTGAAGAA 180
Query 181 GAGTCTTCAAGTAATCATACTTGTCAAGAATGTGGTGCTGAGTTTAAGAAACCTGCTCAC 240
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GAGTCTTCAAGTAAACATACTTGTCATGAATGTGGTGCTGAGTTTAAGAAGCCTGCTCAC 240
Query 241 TTGAAGCAGCATATGCAGAGTCATTCGCTCGAGAGATCTTTTACTTGCTATGTGGATGAT 300
|||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||
Sbjct 241 TTGAAGCAGCATATGCAGAGCCACTCTCTCGAGAGACCTTTTACTTGCTATGTGGATGAT 300
Query 301 TGTGCTGCTAGCTATAGGAGGAAGGATCATCTCAATAGGCATCTTCTTACACATAAAGGG 360
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTGCTACTAGCTATAGGAGAAAGGATCATCTCAATAGGCATCTTCTTACACATAAAGGG 360
Query 361 AAGCTCTTTAAGTGTCCGAAGGAGAACTGCAAGAGTGAATTCTCAGTACAGGGAAATGTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 361 AAGCTCTTTAAGTGTCCGAAGGAGAATTGCAAGAGTGAATTCTCAGTACAGGGCAACGTT 420
Query 421 GGTAGGCATGTTAAGAAATATCATAGTAATGACAACCGTGATAAGGACAATACTGGTTTG 480
|||||||||||||||||| |||||||| || | || |||||||||||| ||||||| |
Sbjct 421 AGTAGGCATGTTAAGAAATGTCATAGTAGTGGCGACAGTGATAAGGACACTACTGGTAAG 480
Query 481 GGCGATGGTGATAAGGACAATACTTGTAAGGGGGAT-GATGATAAGGAAAA-ATCTGGTA 538
|||||| |||||||||| ||| || |||| || ||| | || ||| || || | ||||||
Sbjct 481 GGCGATAGTGATAAGGAAAATGCTGGTAATGGTGATAG-TGGTAAAGACAACA-CTGGTA 538
Query 539 GTGGCG 544
|||||
Sbjct 539 ATGGCG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5