BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72060.1

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476337 jgi|Araly1|476337|fgenesh2_kg.2__1467__AT1G72060.1         584    2e-166


> Ahg476337 jgi|Araly1|476337|fgenesh2_kg.2__1467__AT1G72060.1
Length=384

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 358/377 (95%), Gaps = 7/377 (2%)
 Strand=Plus/Plus

Query  56   ATACAAGATTTGGGTGATGTCTTTCATCATAGCAGGAGCTATTTTAGGAGGAATAATCCC  115
            |||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct  12   ATACAAGATTTGGGTGATGTCTCTCATCGTAGCAGGAGCTATTCTAGGAGGAGTAATCCC  71

Query  116  TGGAGTTACTACAAC-AAAGACAGCGATCGCGTGTCCTCTCTATTGCTTACAAGTAGAGT  174
            ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  72   TGGAGTTACTACAACGAAA-ACAGCGATCGCGTGTCCTCTGTATTGCTTACAAGTAGAGT  130

Query  175  ACATGACATGTCCTTCCTCCGGCGCTGACAAGCTTCCTCCAAGATGCAACTGTTGTCTTG  234
            |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  131  ACATGACATGTCCTTCCTCCGGCGATGACAAGCTTCCTCCAAGATGCAATTGTTGTCTTG  190

Query  235  CTCCCAAAAATTGTACTCTCCATCTCTCTGATTCTACTA-CTATCCATTGTAGCAAATGA  293
            |||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct  191  CTCCAAAAAATTGTACTCTCCATCTCTCTGATTCTAC-ATCTATCCATTGTAACAAATGA  249

Query  294  TATATATCTAGTAAGAAATACCTGATGGTATCCCTCCTTCGAATCCCATCCATTCCTCCC  353
            | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250  T-TATGTCTAGTAAGAAATACCTGATGGTATCCCTCCTTCGAATCCCATCCATTCCTCCC  308

Query  354  ACTCATCGATTTCACCCATTTCTGTAATCTCCAT-TTCTTCTTCTTCTTTCTTAAACTTT  412
            |||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||
Sbjct  309  ACTCATCGATTTCACCCATTTCTGTAATCTCC-TCTTCTTCTACTTCTTTCTCAAACTTT  367

Query  413  TGCATCAAACACTGAAA  429
            |||||||||||||||||
Sbjct  368  TGCATCAAACACTGAAA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16673992393


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5