BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72080.1

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908810 jgi|Araly1|908810|Al_scaffold_0002_1891                    241    7e-63


> Ahg908810 jgi|Araly1|908810|Al_scaffold_0002_1891
Length=279

 Score =  241 bits (130),  Expect = 7e-63
 Identities = 186/212 (88%), Gaps = 7/212 (3%)
 Strand=Plus/Plus

Query  514  CATTTGACCATGCAAATTGAACCACCATCTACCATAATTAACAGAGAGAATGGTACTGAT  573
            |||||||||||||||||||||||||| ||||||||| || ||| |||||||| || ||| 
Sbjct  64   CATTTGACCATGCAAATTGAACCACCCTCTACCATAGTTGACACAGAGAATGATAATGAG  123

Query  574  GCCAACGACAACGTTGTGGCAGTTAATAACATAGAGAGT-GATTGTAAAATTGATGAAAC  632
            ||||||||||||||||||| ||||| ||| ||||||||| || |||||||||||||||||
Sbjct  124  GCCAACGACAACGTTGTGGAAGTTACTAATATAGAGAGTGGA-TGTAAAATTGATGAAAC  182

Query  633  AGTTCCTCCTAAAACTGACGAAGAGATCTTAGAAGATG-AG--GACGATATCCGT-AGTT  688
            |||||||||||||||||||||||||||||||| ||||  ||  |||||| ||| | ||||
Sbjct  183  AGTTCCTCCTAAAACTGACGAAGAGATCTTAGGAGATATAGACGACGATCTCC-TCAGTT  241

Query  689  TATTGGATAAACTCCCAATTCCATCGATGTTT  720
            || || || ||||||||  || ||||||||||
Sbjct  242  TAATGCATGAACTCCCACCTCAATCGATGTTT  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28592187750


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5