BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72090.1
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926567 jgi|Araly1|926567|scaffold_202128.1 3003 0.0
> Ahg926567 jgi|Araly1|926567|scaffold_202128.1
Length=1854
Score = 3003 bits (1626), Expect = 0.0
Identities = 1773/1845 (96%), Gaps = 6/1845 (0%)
Strand=Plus/Plus
Query 26 CGCCGCCGTGgagagagaagagagaATGGAGGATATCGAGGATTTGTTGGCCGGAGGAGT 85
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CGCCGCCGTGGAGAGAGAAGCGAGAATGGAGGATATAGAGGATTTGTTGGCCGGAGGAGT 60
Query 86 CGGTGGTGCACCACCGGGATTCCGATTACCCTTGAATGCAGTCGGAATTAATCCGAAGAC 145
|||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct 61 CGGTGGTGCACCACCGGGATTCCGATTACCGTTAAATGCGGTCGGGATTAATCCGAAGAC 120
Query 146 GAATAAGAGCAAACGTATTAGCTCGAAACCGGATCAAATTACTGCTTCGAATCGTGACTC 205
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAATAAGAGCAAACGTGTTAGCTCGAAACAGGATCAAATTACTGCTTCGAATCGTGACTC 180
Query 206 GCTTGCTCCACCATCGATGAAGATTCCAGGAACTCAGACGATATACATCAAGACGTTTGG 265
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTGCTCCACCATCGTTGAAGATTCCAGGAACTCAGACGATATACATCAAGACGTTTGG 240
Query 266 ATGTTCTCATAATCAGAGTGATAGTGAGTATATGGCTGGTCAGCTTTCTGCATTTGGCTA 325
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATGTTCTCATAATCAGAGTGATAGTGAGTATATGGCTGGTCAGCTTACTGCATTTGGCTA 300
Query 326 TGCGTTGACAGAAGTCCCGGAGGAAGCTGATTTATGGCTCATTAACACCTGTACTGTGAA 385
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 TGCGTTGACAGAAGTCCCGGAGGATGCTGATTTATGGCTCATTAACACCTGTACTGTGAA 360
Query 386 GTCCCCTAGCCAGTCTGCGATGTCTACTTTGATAACGAGGGGTAGAAGTGGGAAAAAGCC 445
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCCCTAGTCAGTCTGCAATGTCTACTTTGATAACGAGGGGTAGAAGTGGGAAAAAGCC 420
Query 446 TCTTGTGATTGCGGGATGTGTTCCTCAGGGCAGTCGTGATCTTAAAGAACTGGAAGGCGT 505
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCTTGTGATAGCGGGATGTGTTCCTCAGGGCAGTCGTGATCTTAAAGAACTAGAAGGCGT 480
Query 506 TAGTGTAGTTGGAGTCCAACAGATTGATCGTGTTGTTGAGATTGTTGAAGAAACTCTTAA 565
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAGTGTAGTTGGAGTTCAACAGATTGATCGTGTTGTTGAGATTGTTGAAGAAACTCTTAA 540
Query 566 GGGTCATGAAGT-ACGGTTGCTGACTCGGAAGACTTTGCCTGCGCTTGATCTCCCAAAGG 624
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGTCATGAAGTGA-GGCTGCTGACTCGGAAGACTTTGCCTGCGCTTGATCTCCCAAAGG 599
Query 625 TGCGGAGGAACAATTTTATCGAAATTCTCCCCATTAATGTTGGCTGTTTGGGTGCCTGTA 684
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCGGAAGAACAATTTTATCGAAATTCTCCCCATTAATGTTGGCTGTTTGGGTGCCTGTA 659
Query 685 CTTACTGCAAGACCAAGCATGCCCGTGGTCATTTAGGAAGTTACACAGTTGATAGTCTTG 744
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 660 CTTACTGCAAGACCAAGCACGCCCGTGGTCACTTAGGAAGCTACACAGTCGATAGCCTTG 719
Query 745 TGGAGCGGGTGAGAACTGTAATCTCTGAAGGAGTCAAGGAGATTTGGTTAAGCAGCGAGG 804
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 720 TGGAGCGGGTGAGAACTGTAATATCTGAAGGAGTCAAGGAGATTTGGTTGAGCAGTGAGG 779
Query 805 ACACTGGAGCATATGGTCGTGACATAGGAGTTAATCTTCCAATACTGCTTAATGCTATCG 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 ACACTGGAGCATATGGTCGTGACATAGGAGTTAATCTTCCAATACTGCTTAATGCTATTG 839
Query 865 TTAAGGAACTTCCTTCTGATCAAAGCACAATGCTAAGGATTGGGATGACTAATCCTCCCT 924
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTAAGGAGCTTCCTTCTGATCAAAGCACAATGCTAAGGATTGGGATGACTAATCCTCCCT 899
Query 925 TTATTTTAGAGCATTTGAAAGAAATAGCGGCAGTGTTACGTCACCCATGTGTCTACACCT 984
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 TTATTCTAGAGCATTTGAAAGAAATAGCAGCAGTGTTACGTCACCCATGTGTCTACACCT 959
Query 985 TTCTTCATGTCCCTGTGCAATCTGGTAGCGATTCTGTGTTGACGGCCATGAACAGGGAAT 1044
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 960 TTCTTCATGTCCCTGTGCAATCTGGCAGTGATTCTGTGTTGACGGCCATGAACAGGGAAT 1019
Query 1045 ATACAGCAAGTGAGTTCAGGACTGTGGTAGACACCTTAACAGAGCTTGTGCCAGGAATGC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATACAGCAAGTGAGTTCAGGACTGTGGTAGACACCTTAACAGAGCTTGTGCCAGGAATGC 1079
Query 1105 AAATTGCTACTGATATAATATGCGGTTTTCCTGGTGAAACCGATGAAGATTTTTCTCAGA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1080 AAATTGCTACTGATATAATATGCGGTTTTCCTGGTGAAACCGATGAAGATTTTTCCCAAA 1139
Query 1165 CAGTTGAACTCATCAAGGATTACAAGTTTCCTCAAGTTCATATTTCTCAGTTTTACCCCA 1224
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAGTTGAACTTATCAAGGATTACAAGTTTCCTCAAGTTCATATTTCTCAGTTTTACCCCA 1199
Query 1225 GACCAGGGACCCCAGCAGCAAAGATGAAGAAGGTACAAAGTAAAATAGTGAAGCAACGAA 1284
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GACCAGGGACCCCGGCAGCAAAGATGAAGAAGGTACAAAGTAAAATAGTGAAGCAACGAA 1259
Query 1285 GCCGTGAATTGACTTCTGTCTTTGAGGCTTTTGCGCCTTACACCGGAATGGAGTGCAGAG 1344
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 1260 GCCGTGAATTGACTTCTGTCTTTGAGGCTTTTGCACCTTACACTGGAATGGAGGGCAGAG 1319
Query 1345 AAGAGAGGATATGGATAACTGAAGTAGCTACTGATGGAATTCATTTGGTTGGACATACGA 1404
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 AAGAGAGGATATGGATAACCGAAGTAGCGACTGATGGAATTCATTTGGTTGGACATACGA 1379
Query 1405 AGGGATATGTACAGGTCTTAGTTACTGGACCAGAAAGTATGCTTGGGACTTCAGCTATGG 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGGGATATGTACAGGTCTTAGTTACTGGACCAGAAAGTATGCTTGGGACTTCAGCTATGG 1439
Query 1465 CGAGGATAACATCTGTGGGGAGATGGTCAGTATTTGGGGAAGTGATTGAGACATTTAGCT 1524
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1440 CGAGGATAACATCTGTGGGGAGATGGTCAGTGTTTGGGGAAGTGATTGAGACATTTAGCT 1499
Query 1525 CTGCAAATAGAGAAACAAAATCCCGAGAGGAAACAAAGCTGCCTTGTTCGTCGAATGTTA 1584
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1500 CTGCAAATAGAGAAACAAAATCCCGAGAGGAAACAAAGCCGCCTTGTTCGTCGACTGTTA 1559
Query 1585 GCACTTGTGAGACTTGCACTTGCTCTGCTGAGAGCTGTGGAGAAGAGAGATCAGGAGAGG 1644
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 GTACTTGTGAGACTTGCACTTGCTCTGGTGAGAGCTGTGGAGAAGAGAGATCAGGAGAGG 1619
Query 1645 CGTGTAACATTTCTGGAAATATCTCAGGACAAGATGATA-ACAAGGGAAAGTCAAAGAAA 1703
|||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |||||
Sbjct 1620 CGTGTAACATTTCTGGAAATATCTCAAGACAAGATGATCGA-AAGGGAGAGTCAGAGAAA 1678
Query 1704 GAAGAGAAGGAGGTACAAGAGGTCGTCGTACCGGGAAGCAGCGTAGCAAATTGGGGTTTC 1763
|||||| |||| | | |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1679 CAAGAGACGGAGATGCGAGAGGTCGTCGTACCGAGAAGCAGTGTAGCAAATTGGGGTTTC 1738
Query 1764 ATTGATAAGGCACTTGTCTGTGGAGTGTTCGTAAGCTCTGTCACCATTCTTGTTTTGTTG 1823
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1739 ATTGATAAGGCACTAGTGTGTGGAGTGTTCGTAAGCTCTCTCACCATTCTTGTTTTGTTG 1798
Query 1824 ATTAGCATTGCATGTAGAGTTTTGCTGCGGT-AATGAATCAGTGT 1867
||||| || |||| |||||||||| |||| | |||||||| ||||
Sbjct 1799 ATTAGTATAGCATCTAGAGTTTTGATGCG-TCAATGAATCTGTGT 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5