BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72125.1
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316181 jgi|Araly1|316181|fgenesh1_pm.C_scaffold_2001214 2316 0.0
> Ahg316181 jgi|Araly1|316181|fgenesh1_pm.C_scaffold_2001214
Length=3243
Score = 2316 bits (1254), Expect = 0.0
Identities = 1544/1684 (92%), Gaps = 20/1684 (1%)
Strand=Plus/Plus
Query 1 ATGACGAC-GACTTCCA-AAACTTCTCTTCAAGAAGAATACGTCATC-GACGCCGTTGAC 57
|||||||| | ||| || | | || |||||||||||||||||||| | ||||||||||||
Sbjct 1570 ATGACGACTG-CTT-CAGATATTTATCTTCAAGAAGAATACGTCA-CGGACGCCGTTGAC 1626
Query 58 CACCGTGGCTTTTCCGCCAGAAGGTCTATTACCGGTAGATGGAGAGCTGCATGGTTCATT 117
|||||||| ||| |||||| ||| || | |||||||||||||||||| || | ||||||
Sbjct 1627 CACCGTGGATTTGCCGCCAAAAGATCCAATACCGGTAGATGGAGAGCCGCCTTGTTCATA 1686
Query 118 ATCGGTGTGGAGGTGGCGGAGAGGTTCGCGAACTACGGGATCGGATCAAACCTGATAAGC 177
||||||||||||||||||||||||||||| |||| || |||||||||||| | |||||
Sbjct 1687 ATCGGTGTGGAGGTGGCGGAGAGGTTCGCTTACTATGGAATCGGATCAAACTTAATAAGT 1746
Query 178 TACTTGACTGGACCACTTGGTCAATCTACGGCGGTCGCCGCCGCTAATGTCAACGCTTGG 237
|| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1747 TATTTGACTGGACCACTTGGTCAATCCACGGCGGTAGCCGCCGCTAATGTCAACGCCTGG 1806
Query 238 TCTGGAATTTCCACTATTCTTCCTCTTCTTGGAGCTTTTGTCGCCGACGCTTTTCTTGGT 297
|| |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1807 TCGGGAATTGCAACTCTTCTTCCTGTTCTTGGAGCTTTTGTCGCCGACGCTTTTCTTGGT 1866
Query 298 CGCTACATAACAATTATCATCGCTTCTTTTATCTATGTCCTGGGACTGGCGTTTCTGACT 357
|| ||| |||||||||||||||| || ||||||| |||||||||||||| |||||||||
Sbjct 1867 CGGTACCGAACAATTATCATCGCTACTCTTATCTACGTCCTGGGACTGGCATTTCTGACT 1926
Query 358 TTATCTGCGTTTCTGATTCCCAACAATACTGAAGTGACCTCGTCACcttcttcttttctc 417
||||||||||||||||||||||||| ||||||||||||||| | | | |||||||||||
Sbjct 1927 TTATCTGCGTTTCTGATTCCCAACACTACTGAAGTGACCTC-T-A-CACCTTCTTTTCTC 1983
Query 418 aatgcactcttcttcttctctcttTATTTGGTGGCTATTGGACAAAGTGGACACAAGCCT 477
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1984 AATGCACTCTTCTTTTTCTCTCTGTATTTGGTGGCTATTGGACAAAGTGGCCACAAGCCT 2043
Query 478 TGTGTTCAGGCTTTTGGTGCAGATCAGTTTGATGAGAAGAACCCGCAAGAGAATAGTGAT 537
|||||||||||||||||||| || ||||||||||| ||||||| ||||||||||| |||
Sbjct 2044 TGTGTTCAGGCTTTTGGTGCTGACCAGTTTGATGAAAAGAACCAGCAAGAGAATACTGAC 2103
Query 538 AGAAGCTCTTTCTTCAACTGGTGGTACCTTAGTATGTGTGCAGGAATCGGCCTAGCGATT 597
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2104 AGAAGCTCCTTCTTCAACTGGTGGTACCTTAGTATGTGTGCAGGAATCGCCCTGGCGATT 2163
Query 598 TTAGTGGTTGTGTACATCCAAGAAAATGTAAGCTGGGCACTTGGGTTTGGAATCCCATGT 657
|||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct 2164 TTAGTGGTTGTGTACATCCAGGAAAATGTAAGCTGGGCGGTCGGGTTCGGAATCCCATGT 2223
Query 658 GTGTTCATGGTGATCTCTCTTGTTCTTTTCGTTTTAGGGAGAAAGAGTTATAGGTTTAGT 717
|| ||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||
Sbjct 2224 GTCTTCATGGTGATCTCTCTTGTTCTTTTCGTGTTAGGGAGGAGGAGTTATAGGTACAGT 2283
Query 718 AAAACAAGACAAGAAGAGGAAA-CAAACCCGTTTACGAGAATAGGTAGAGTCTTCTTTGT 776
|||| ||||||||||||||||| | ||||||||||| || ||| ||||||||||||||||
Sbjct 2284 AAAAGAAGACAAGAAGAGGAAATC-AACCCGTTTACTAGGATATGTAGAGTCTTCTTTGT 2342
Query 777 AGCATTCAAGAACCAGAGATTGAATTCATCAGACTTGTGCAAAGTTGAGCTAATAGAGGC 836
|||||||| ||||| ||||||| ||| ||||| |||| ||||||||| | |||||||
Sbjct 2343 TGCATTCAAAAACCAAAGATTGAGTTCCTCAGAATTGTACAAAGTTGA-C--CTAGAGGC 2399
Query 837 AAATCGATCTCAAGAATCTCCAGAGGAGCTGAGTTTTCTCAACAAAGCATTGCTTGTCCC 896
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2400 AAATCCATCTCAAGAATCTCCAGAGGAGCGGAGTTTTCTCAACAAAGCATTGCTTGTCCC 2459
Query 897 AAATGATTCTGATGAAGGAGAAGTGGCATGCAAGTCTAGAGATGTCGAAGATGCTACAGC 956
||||||||| |||||||||| |||||||||||||| |||||||||| ||||||||| |
Sbjct 2460 CAATGATTCTCCTGAAGGAGAAATGGCATGCAAGTCTCGAGATGTCGACGATGCTACAAC 2519
Query 957 TCTTGTCAGGCTTATTCCAGTATGGCTTACAACTTTGGCTTACGCGATACCTTTCGCGCA 1016
|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2520 TCTTGTTAGGCTTATTCCAGTATGGCTTACAACTTTGGCTTACGCGATACCCTACGCGCA 2579
Query 1017 GTACATGACTTTCTTTACAAAGCAAGGTGTCACAATGGAAAGAACAATATTTCCAGGTGT 1076
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2580 GTACATGACTTTCTTCACAAAGCAAGGTGTCACAATGGAAAGAACAATTTTTCCAGGTTT 2639
Query 1077 AGAGATCCCACCTGCTTCTCTTCAGGTTCTTATCAGCATATCAATTGTTCTCTTTGTCCC 1136
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2640 AGAGATCCCACCTGCTTCTCTTCAGGCTCTTATCAGCATAACAATTGTTCTCTTTGTCCC 2699
Query 1137 CATCTATGACCGTGTTTTGGTCCCAATCGGAAGGTCAATAACTAAAGATCCTTGTGGCAT 1196
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2700 CATCTACGACCGTGTTTTGGTTCCAATCGGAAGGTCAATAACCAAAGATCCTTGTGGCAT 2759
Query 1197 CACAACTCTCAAAAGAATTGGAACCGGAATGGTACTAGCAACTCTCACTATGGTGGTGGC 1256
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2760 CACAACGCTCAAAAGAATTGGAACCGGAATGGTACTAGCAACTCTCACTATGGCGGTGGC 2819
Query 1257 TGCTTTGGTTGAGTCAAAGCGGCTCGAGACTGCAAAAGAATACGGACTTATAGACCAACC 1316
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2820 AGCTTTGGTTGAGTCAAAGCGGCTCGATACTGCAAAAGAATACGGACTTATAGACCAACC 2879
Query 1317 GAAAACAACTCTTCCAATGTCGATA-TGGTGGTTATTCCCTCAGTATATGTTACTGGGAT 1375
||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||
Sbjct 2880 GAAAACAACTCTTCCAATGTCGATACTG-TGGTTGTTCCCTCAGTATATATTGCTGGGAT 2938
Query 1376 TGGCTGACGTACACACTTTAGTAGGAATGCAAGAGTTCTTCTACAGCCAAGTCCCCACTG 1435
||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2939 TGGCTGATGTACACACATTAGTGGGAATGCAAGAGTTCTTCTACAGTCAAGTCCCCACTG 2998
Query 1436 AGCTGAGAAGCCTCGGTCTCGCGA-TTTACTTAAGTGCAATGGGCGTTGGAAGCTTA-TT 1493
||||||||||| |||||||||| | ||||||||||||| | ||||| ||||||||| ||
Sbjct 2999 AGCTGAGAAGCATCGGTCTCGC-ACTTTACTTAAGTGCGTTAGGCGTGGGAAGCTTAATT 3057
Query 1494 AAGCAGCTTACTCATCTATCTGATCGATTTGGCCACTGGAGGAGACGCCGGAAACAGCTG 1553
|| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 3058 AA-CAGCTTACTCATCTCTCTGATCGACTTGGCCACTGGAGGAGACGCCGGAAATAGCTG 3116
Query 1554 GTTCAACAGTAATCTGAACAGAGCCCATCTAGATTACTTCTATTGGTTACTTGCGGTTGT 1613
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 3117 GTTTAACAGTAATCTGAACAGAGCCCATCTCGATTACTTCTATTGGTTAGTTGCGGTTGT 3176
Query 1614 TAGTGCCGTTGGGTTCTTTACGTTCTTGTTCATCTCCAAGTCCTATATATATCGCCGGGT 1673
||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||
Sbjct 3177 TAGTGCCGTTGGGTTCTTTACATTCTTGTTCATTTCCAGGTCGTATATATATCGCCGGGT 3236
Query 1674 GGAC 1677
||||
Sbjct 3237 GGAC 3240
Score = 1260 bits (682), Expect = 0.0
Identities = 966/1097 (88%), Gaps = 43/1097 (4%)
Strand=Plus/Plus
Query 523 CAAGAGAATA-GTGATAGAAGCTCTTTCTTCAACTGGTGGTACCTTAGTATGTGTGCAGG 581
|||||| ||| ||| |||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 499 CAAGAG-ATATCTGACAGAAGCTCCTTCTTCAACTGGTGGTACCTTAGTTTGTCTGCAGG 557
Query 582 AATCGGCCTAGCGATTTTAGTGGTTGTGTACATCCAAGAA-AATGTAAGCTGGGCACTTG 640
|||| |||| |||||||||||||||||||||||||| ||| | | | |||||||| |||
Sbjct 558 AATCTGCCTGGCGATTTTAGTGGTTGTGTACATCCAGGAAGAGT-TCAGCTGGGCGTTTG 616
Query 641 GGTTTGGAATCCCATGTGTGTTCATGGTGATCTCTCTTGTTCTTTTCGTTTTAGGGAGAA 700
||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 617 GGTTTGGAATCCCATGTTTGTTCATGGTGATCTCTCTCGTTCTTTTCGTGTTAGGGAGAA 676
Query 701 AGAGTTATAGGTTTAGTAAAACAAGACAAGAAGAGGAAACAAACCCGTTTACGAGAATAG 760
||||||||||| ||||||| |||| | |||||||||| ||||||||||||||| ||||
Sbjct 677 GGAGTTATAGGTACAGTAAAAGAAGAGATGAAGAGGAAATAAACCCGTTTACGAGGATAG 736
Query 761 GTAGAGTCTTCTTTGTAGCATTCAAGAACCAGAGATTGAATTCATCAGACTTGTGCAAAG 820
||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 737 GTAGAGTCTTCTTTGTAGCATTCAAGAACCAAAGATTGAGTTCATCAGAATTGTGCAAAG 796
Query 821 TTGAGCTAATAGAGGCAAATCGATCTCAAGAATCTCCAGAGGAGCTGAGTTTTCTCAACA 880
|||||| ||||||||||| | | |||||||||| | | ||| ||||||||||
Sbjct 797 TTGAGC---TAGAGGCAAAT--A---C----ATCTCCAGAGAAACAGAGGTTTCTCAACA 844
Query 881 AAGCATTGCTTGT-CCCAAATGATTCTGATGAAGGAGAAGTGGCATGCAAGTCTAGAGAT 939
||||||||||||| ||| ||||||||| | |||||||| |||||||||||| | |||
Sbjct 845 AAGCATTGCTTGTACCC-AATGATTCTTCTCAAGGAGAAAACGCATGCAAGTCTTGTGAT 903
Query 940 GTCGAAGATGCTACAGCTCTTGTCAGGCTTATTCCAGTATGGCTTACAACTTTGGCTTAC 999
||||||||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 904 GTCGAAGATGCCACAGCTCTTATCAGGCTAATTCCAGTATGGCTTACAACTCTGGCTTAC 963
Query 1000 GCGATA-CCTTTCGCGCAGTACATGAC-TTTCTTTACAAAGCAAGGTGTCACAATGGAAA 1057
| ||| ||| | || ||||||||||| ||| || || |||||||| ||||||||||| |
Sbjct 964 ACCATACCCTAT-GCTCAGTACATGACATTT-TTCACTAAGCAAGGCGTCACAATGGATA 1021
Query 1058 GAACAATAT-TTCCAGGTG-TAGAGATCCCACCTGCTTCTCTTCAGGTTC-TTATCAGCA 1114
||||||| | |||| |||| || |||||||||||||||||||||||| || ||||| |||
Sbjct 1022 GAACAAT-TCTTCCTGGTGTTA-AGATCCCACCTGCTTCTCTTCAGG-TCTTTATCGGCA 1078
Query 1115 TATCAATTGTTCTCTTTGTCCCCATCTATGACCGTGTTTTGGTCCCAATCGGAAGGTCAA 1174
|||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 1079 TATCAATTGTCCTCTTTGTCCCCATCTACGACCGTGTTTTCGTCCCAATCGCCAGGTCAA 1138
Query 1175 TAACTAAAGATCCTTGTGGCATCACAACTCTCAAAAGAATTGGAACCGGAATGGTACTAG 1234
|||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| |
Sbjct 1139 TAACCAAAGACCCTTGTGGCATCACAACGCTCAAAAGAATTGGAACTGGAATTGTACT-G 1197
Query 1235 -CAACTCTCACTATGGTGGTGGCTGCTTTGGTTGAGTCAAAGCGGCTCGAGACTGCAAAA 1293
| | | |||||||||| | || ||| ||||||||||||||||||||||||||||||||
Sbjct 1198 TCGATTATCACTATGGTAATTGCAGCTCTGGTTGAGTCAAAGCGGCTCGAGACTGCAAAA 1257
Query 1294 GAATACGGACTTATAGACCAACC-GAAAACAACTCTTCCAATGTCGATATGGTGGTTATT 1352
| | | ||||||||||| | | ||||| ||||||||||||||||||||||| |
Sbjct 1258 G--T------T-ATAGACCAACCAGGAG-CAACTGTTCCAATGTCGATATGGTGGTTAAT 1307
Query 1353 CCCTCAGTATATGTTACTGGGATTGGCTGACGTACACACTTTAGTAGGAATGCAAGAGTT 1412
|||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1308 CCCTCAGTATTTGTTGCTGGGATTGGCTGACGTATACACTTTAGTGGGAATGCAAGAGTT 1367
Query 1413 CTTCTACAGCCAAGTCCCCACTGAGCTGAGAAGCCTCGGTCTCGCGATTTACTTAAGTGC 1472
|||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1368 CTTCTACAGCCAAGTCCCTACTGAGCTGAGAAGCATCGGTCTCGCGCTTTACTTAAGTGC 1427
Query 1473 AATGGGCGTTGG-AAGCTTATTAAGCAGCTTACTCATCTATCTGATCGATTTGGCCACTG 1531
| ||||| |||| ||||||||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 1428 ATTGGGC-TTGGGAAGCTTATTGAGCAGCTTACTCATCTCTCTGATCGACTTGGCCACTG 1486
Query 1532 GAGGAGACGCCGGAAACAGCTGGTTCAACAGTAATCTGAACAGAGCCCATCTAGATTACT 1591
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1487 GGGGAGACGCCGGAAACAGCTGGTTTAACAGTAATCTGAACAGAGCCCATCTTGATTACT 1546
Query 1592 TCTATTGGTTACTTGCG 1608
|||||||||||||||||
Sbjct 1547 TCTATTGGTTACTTGCG 1563
Score = 503 bits (272), Expect = 2e-141
Identities = 424/495 (86%), Gaps = 19/495 (4%)
Strand=Plus/Plus
Query 1 ATGACGACGACTTCCA-AAACTTCTCTTCAAGAAGAATACGTCATCGACGCCGTTGACCA 59
|||| ||| |||| || ||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 1 ATGATGACTACTT-CAGAAATTTCTCTTCAAGAAGAATACGTCACCGACACCGTTGACCA 59
Query 60 CCGTGGCTTTTCCGCCAGAAGGTCTATTACCGGTAGATGGAGAGCTGCATGGTTCATTAT 119
|||||| || |||| | ||| || | |||||||||||||||||| || | |||||| ||
Sbjct 60 CCGTGGATTCGCCGCTAAAAGATCCAATACCGGTAGATGGAGAGCCGCCTTGTTCATAAT 119
Query 120 CGGTGTGGAGGTGGCGGAGAGGTTCGCGAACTACGGGATCGGATCAAACCTGATAAGCTA 179
||||||||||||||||||||||||||| |||| || |||||||||||| | ||||| ||
Sbjct 120 CGGTGTGGAGGTGGCGGAGAGGTTCGCTTACTATGGAATCGGATCAAACTTAATAAGTTA 179
Query 180 CTTGACTGGACCACTTGGTCAATCTACGGCGGTCGCCGCCGCTAATGTCAACGCTTGGTC 239
||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 180 TTTGACTGGACCACTTGGTCAATCCACGGCGGTAGCCGCCGCTAATGTTAACGCCTGGTC 239
Query 240 TGGAATTTCCACTATTCTTCCT-CTTCTTGGAGCTTTTGTCGCCGACGCTTTTCTTGGTC 298
||| || ||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 240 GGGAGTTGCCACTCTTCTTCCTGC-TCTTGGAGCTTTTGTCGCCGACGCTTTTCTTGGTC 298
Query 299 GCTACATAACAATTATCATCGCTTCTTTTATCTATGTCCTGGGACTGGCGTTTCTGACTT 358
| ||| ||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 299 GGTACCGAACAATTATCATCGCTTCTCTTATCTACGTCCTGGGATTGGCATTTCTGACTT 358
Query 359 TATCTGCGTTTCTGATTCCCA--A-------C-A-A-TACT---GAAGTGACCTCGTCAC 403
||||||||||||||||||| | | | | | || | ||||||| ||| ||||
Sbjct 359 TATCTGCGTTTCTGATTCCTATTAGTTGTAGCGAGAATAGTACCGAAGTGATCTCTTCAC 418
Query 404 cttcttcttttctcaatgcactcttcttcttctctcttTATTTGGTGGCTATTGGACAAA 463
||||||| || ||||| |||||||||||||| ||||| ||| ||||||| ||||||||||
Sbjct 419 CTTCTTCCTTACTCAACGCACTCTTCTTCTTTTCTCTGTATCTGGTGGCAATTGGACAAA 478
Query 464 GTGGACACAAGCCTT 478
|||| ||||||||||
Sbjct 479 GTGGCCACAAGCCTT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68257719040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5