BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72130.1
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316182 jgi|Araly1|316182|fgenesh1_pm.C_scaffold_2001215 2318 0.0
Ahg339434 jgi|Araly1|339434|fgenesh1_pg.C_scaffold_2001533 1463 0.0
Ahg339433 jgi|Araly1|339433|fgenesh1_pg.C_scaffold_2001532 695 0.0
> Ahg316182 jgi|Araly1|316182|fgenesh1_pm.C_scaffold_2001215
Length=1608
Score = 2318 bits (1255), Expect = 0.0
Identities = 1505/1624 (93%), Gaps = 23/1624 (1%)
Strand=Plus/Plus
Query 21 ATGGCTATCACCTACTCCTCCGCCGACGAGCTCGGAAACACCACTGAGGGTTTTCTGGAA 80
||||| |||||| ||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 1 ATGGCAATCACCCGTTCCTCCGCCAATGAGCTCGGAAATACCACTGAGGGTTTTCTCGAA 60
Query 81 ATCCGAGAAAATACCTCCGGTGGATGGAAATCAGCGAGGCTCATCATCGTTGTACAAATG 140
|||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 61 ATCCGAGAAAATACCTCCGGTGGATGGAAATCCGCGAGGCTCATCATCGGTGTAGAAATG 120
Query 141 GCGGAGCGATTCGCTTACTTTGGTATAGCGTCAAACCTAATAATGTACTTGACGGGACCG 200
||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 121 GCGGAGCGATTTGCTTACTTTGGCATAGCGTCAAACCTAATAATGTACCTGACAGGACCA 180
Query 201 TTAGGTGAGTCAACAGCTG-CAGCGGCAGCGAATGTCAATGCTTGGACTGGAACGGTGGC 259
||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||| |
Sbjct 181 TTAGGTGAGTCAACAGCTGTC-GCGGCAGCGAATGTCAATGCTTGGGTTGGAACAGTGTC 239
Query 260 GTTTCTGCCGCTTCTCGGGGGCTTTCTCGCTGACTCGTATCTCGGTCGTTTCCGTACTAT 319
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 240 GTTTCTGCCGCTTCTCGGGGGCTTTGTCGCTGACTCGTTTCTCGGTCGTTTCCGTACTAT 299
Query 320 AATCATCTCATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAACCATGAT 379
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CGCCATCTCATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCCTTTTCAACCATGAT 359
Query 380 TCCTTCTCATCAGTCCAAAGATTCGAATCAGCTGCAAGAGACTATCTTCTTCTTCTCTCT 439
||||||||| | | |||||||||||||||||| |||| |||| ||||||||| ||||||
Sbjct 360 TCCTTCTCA-CCG--CAAAGATTCGAATCAGCTCCAAGTGACTCTCTTCTTCTGCTCTCT 416
Query 440 TTATCTTGTAGCAATAGGACAAGGCGGTTACAACCCGTGTATTAAGGTATTTGGAGCGGA 499
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 417 GTATCTTGTAGCAATAGGACAAGGCGGTTACAAACCGTGTATCAAGGTATTTGGAGCTGA 476
Query 500 TCAATTCGATGGAAATGATCAT-AAAGAGGCAAGAGACAAGAGTTCATTCTTCAACTGGT 558
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||
Sbjct 477 TCAATTCGATGGAAATGATC-TAAAAGAGGCAAAAGACAAGAGTTCTTTCTTCAACTGGT 535
Query 559 TGATGTTTGGAAACTGTATTAGCATATTGACGACTCGTTTGGTCTCTACCTACATTCAAG 618
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 536 TGATGTTTGGAAACTGTATTAGCATCTTGACGACTCGTTTAGTCTCTACCTATATTCAAG 595
Query 619 AGAACCTAAGCTGGTCACTAGGGTTTGGTATTCCTAGTGTTTCCATGTTGCTTTCTCTGT 678
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 596 AGAACCTAAGCTGGTCACTAGGATTTGGTATTCCAAGTGTTTCCATGTTGCTTGCTCTGT 655
Query 679 TTCTCTTCCTCCTTGGAACTACCTCTTACCGTTTTAGTACTGAGAGAGTAGGAAAGAAAA 738
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 656 TTCTCTTCCTCCTTGGAACTAACTCTTACCGTTTTAGTACTGAGAGAGAAGGAAAGAAAA 715
Query 739 ACCCTTTTGCCAGAATCAGTCGTGTATTCATGGAGGCTTTAAAGAA-CAGAAGACAACCC 797
|||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 716 ACCCTTTTGCGAGAATCAGTCGTGTTTTCATGGAGGCTTTAAAGAACCA-AAGACAACCC 774
Query 798 GATTTAGATATTGCTAACGCGAACGCCAACGAGACTCTCCTTCTCCTGGCTCACCAGAGT 857
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GATTTAGATA-----AA-GCTAACGCGAACGAGACTCTCCTTCTCCTGGCTCACCAGAGT 828
Query 858 TCCAAACAGTTCAGATTCCTAGACAGGGCAGCTATTTCTTGTGAATTGGCTGAAATTGAA 917
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 TCCAAACAGTTCAGATTCCTAGACAGGGCAGCTATTTCATGTGAATTGGCTGAAATTGAA 888
Query 918 GAAGCAAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTT-CTGTAGTCTACACCAT 976
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 889 GAAGCAAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTTGC-GTAGTTTACACCAT 947
Query 977 TGTACATGCACAATCCCCTACtttttttACAAAGCAAGGAGCCACAATGGACAGGTCAAT 1036
||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 948 TGTACATGCACAAGCCCCTACTTTCTTTACAAAGCAAGGAGACACAATGGACAGGTCAAT 1007
Query 1037 CTCACCAGGACTCTTAGTTCCTGCAGCTACACTTCAAAGTTTCATAAACCTCTCAGTAGT 1096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1008 CTCACCAGGACTCTTAGTCCCTGCAGCTACACTTCAAAGTTTCATAAACCTCTCAATAGT 1067
Query 1097 CGTTTTCATCCCAATCTACGACCGCTTACTCGTCCCATTCGCAAGGTCCTTCACTCAAAA 1156
|||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 1068 CGTTTTCATCCCCATCTACGACCGTTTACTCGTCCCATTTGCAAGATCCTTTACTCAAAA 1127
Query 1157 -CTCATCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTCCTCTCCATTCTTG 1215
| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1128 AC-CATCAGGAATCACAATGCTACAAAGGATTGGTACAGGAATTTTCCTCTCCATTCTTG 1186
Query 1216 CTATGGTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCC-CGGGATGAACTC 1274
|||||||| ||||||| || ||||||| |||||||| || | | | |||||||| |||
Sbjct 1187 CTATGGTAGTAGCCGCCTTAATCGAGACCAAAAGGCTACA-GACTACTCGGGATGACCTC 1245
Query 1275 TCCATACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTTTGGAGTCTCAGAT 1334
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1246 ACCATACCGATGAGCGTGTGGTGGCTGGTTCCACAGTATGTTATCCTTGGAGTCTCAGAT 1305
Query 1335 ATGTTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCCTAGTGAGCTTAGG 1394
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1306 GTGTTCACAATGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTCCCTAGTGAGCTTAGG 1365
Query 1395 AGCGTTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTACCTAAGCAGCTTT 1454
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1366 AGCATTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTTCCTAAGCAGCTTT 1425
Query 1455 ATGATATCAGTCATTGATAAAATCACGAACCAGTATGGTCAAAGGAGCTGGTTCGATAAT 1514
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1426 ATGATATCAGTCATTGATAAAATCACTAGCCAGTATGGTCAAACGAGCTGGTTCGATAAT 1485
Query 1515 GACTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTTGTCTCGGCTTCATT 1574
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1486 GACTTGAACCAAGCTCATCTAGATTACTTCTACTGGCTACTCGCTTGTCTCAGCTTCATT 1545
Query 1575 GGTTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACAGCAGATCAAACACCTTT 1634
||||| |||| ||| ||||||||||||||||| |||| ||||| |||| | ||||| |||
Sbjct 1546 GGTTTAGCCTCCTATTTATGGTTCGCCAAGTCGTATGCCTACAACAGACCGAACAC-TTT 1604
Query 1635 -TAA 1637
|||
Sbjct 1605 CTAA 1608
> Ahg339434 jgi|Araly1|339434|fgenesh1_pg.C_scaffold_2001533
Length=1605
Score = 1463 bits (792), Expect = 0.0
Identities = 1300/1541 (84%), Gaps = 52/1541 (3%)
Strand=Plus/Plus
Query 94 CCTCCGGTGGATGGAAATCAGCGAGGCTCATCATCGTTGTAC-AAATGGCGGAGCGA-TT 151
|||| || ||||||||||| || ||||| ||||||| ||| | |||||||||| | | ||
Sbjct 86 CCTCTGGAGGATGGAAATCGGCCAGGCTAATCATCGGTGT-CGAAATGGCGGAAC-AGTT 143
Query 152 CG-CTTACTT-TGGTATAGCGTCAAACCTAATAATGTACT-TGACGGGACCGTTAGGTGA 208
|| ||| || || || | || ||| | |||| ||| | |||| ||||| | || ||
Sbjct 144 CGCCTT--TTACGGGATTTCCTCGAACTTGATAACGTA-TCTGACCGGACCACTGGGGGA 200
Query 209 GTCAACAGCTGCAGCGGCAGCGAATGTCAATGCTTGGACTGGAACGGTGGCGTTTCTGCC 268
|||||||||||| || ||||| |||||||| || ||||||||||||||| ||||||||||
Sbjct 201 GTCAACAGCTGCCGCTGCAGCCAATGTCAACGCATGGACTGGAACGGTGTCGTTTCTGCC 260
Query 269 GCTTCTCGGGGGCTTTCTCGCTGACTCGTATCTCGGTCGTTTCCGTACTATAATCATCTC 328
|||||| |||||||| |||||||||||| ||| || ||||||||||| || | ||| |
Sbjct 261 CCTTCTCTGGGGCTTTATCGCTGACTCGTTTCTTGGACGTTTCCGTACAATCGTGATCGC 320
Query 329 ATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAACCATGATTCCTTCTCA 388
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 321 GTCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAGCCATGGCTCCTTCTAA 380
Query 389 TCAGTCCAAAGATTCGAATCAGCTGCAAGAGACTATCTTCTTCTTCTCTCTTTATCTTGT 448
| || |||||| | ||||| || |||| || | ||||||||| |||||| |||||| |
Sbjct 381 -C--TCTAAAGATCCAAATCAACTCCAAGTGATTCTCTTCTTCTGCTCTCTGTATCTTAT 437
Query 449 AGCAATAGGACAAGGCGGTTACAACCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGA 508
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 438 AGCAATAGGACAAGGCGGTTACAAACCGTGTATTAAGGTATTTGGAGCAGATCAATTCGA 497
Query 509 TGGAAATGATCAT-AAAGAGGCAAGAGACAAGAGTTCATTCTTCAACTGGTTGATGTTTG 567
||||||||||| | |||||||||| || ||||||||| ||||| |||||||| |||||||
Sbjct 498 TGGAAATGATC-TCAAAGAGGCAAAAGCCAAGAGTTCTTTCTTTAACTGGTTAATGTTTG 556
Query 568 GAAACTGTATTAGCATATTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGA-ACCTA 626
||| ||| ||||||||||||| ||||| |||||||||| |||||||||||| | |||||
Sbjct 557 GAAGTTGTGTTAGCATATTGACCACTCGATTGGTCTCTAGCTACATTCAAGA-ATACCTA 615
Query 627 AGCTGGTCACT-AGGGTTTGGTATTCCTAGTGTTTCCATGTTGCTTTCTCTGTTTCTCTT 685
|| ||||| || ||| ||||||||||| |||||||||||| | ||| ||||| |||||||
Sbjct 616 AGTTGGTC-CTTAGGATTTGGTATTCCAAGTGTTTCCATGCTACTTGCTCTGCTTCTCTT 674
Query 686 CCTCCTTGGAACTACCTCTTACCGTTTTAGTACTGAGA-GAGTAGGAAAGAAAAACCCTT 744
||| ||||| |||| ||||||| |||||| || | | ||| |||||||||||| || |
Sbjct 675 CCTTCTTGGCACTAAGACTTACCGCTTTAGTGCT-ACAAGAGGAGGAAAGAAAAATCCGT 733
Query 745 TTGCCAGAATCAGTCGTGTATTCATGGAGGCTTTAAAGAACAGAA-GACAACCCGATTTA 803
|||| |||||||||||||| ||||||| ||||||||||| |||| | ||||| |||| |
Sbjct 734 TTGCTAGAATCAGTCGTGTTTTCATGGTTGCTTTAAAGAATAGAACG-CAACCAGATTCA 792
Query 804 GATATTGCTAACGCGAACGCCAACGAGACTCTCCTTCTCCTGGCTCACCAGAGTTCCAAA 863
|||| |||||| | || |||||||| | | ||||| | | |||||||||||||
Sbjct 793 TATATAGCTAAC-C---CG--AACGAGAC-C-C-TTCTCATT--T-ACCAGAGTTCCAAG 840
Query 864 CAGTTCAGATTCCTAGACAGGGCAGCTATTTCTTGT-GAATTGGCTGAAATTGAAGAAGC 922
|| ||||| ||||| |||| |||||| ||||| ||| | ||| ||||||||||||||||
Sbjct 841 CAATTCAGGTTCCTCGACAAGGCAGCGATTTCGTGTAGTTTTG-CTGAAATTGAAGAAGC 899
Query 923 AAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTTCTGTAGTCTACACCATTGTACA 982
||| ||||| |||| |||| ||||||||||| | |||| | |||||||| | ||||||
Sbjct 900 AAAAGCGGTGCTTAAGCTTGTTCCCATATGGCTGACTTGTTTAGTCTACGCTATTGTATG 959
Query 983 TGCACAATCCCCTACtttttttACAAAGCAAGGAGCCACAATGGACAGGTCAATCTCACC 1042
||||||||||| |||||| || |||||||||||||||| ||||||||| |||||||| ||
Sbjct 960 TGCACAATCCCATACTTTCTTCACAAAGCAAGGAGCCAAAATGGACAGATCAATCTCTCC 1019
Query 1043 AGGACTCTTAGTTCCTGCAGCTACACTTCAAAGTTTCATAAACCTCT-CAGTAGTCGTTT 1101
|||||||||||| ||||| |||||||| ||| ||||||||| ||| | || | ||| |||
Sbjct 1020 AGGACTCTTAGTCCCTGCGGCTACACTCCAATGTTTCATAAGCCT-TACAATGGTCATTT 1078
Query 1102 TCATCCCAATCTACGACCG-CTTACTCGTCCCATTCGCAAGGTCCTTCACTCAAAACTCA 1160
| ||||||||||||||||| || ||||||||| ||||||| || |||||||| ||| |
Sbjct 1079 TTATCCCAATCTACGACCGTCTC-CTCGTCCCAATCGCAAGATCTTTCACTCATAACCCT 1137
Query 1161 TCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTCCTCTCCATTCTTGCTATG 1220
||||| ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1138 TCAGGAATCACAATGCTACAAAGGATTGGCACAGGGATTTTTCTCTCCATCCTTGCTATG 1197
Query 1221 GTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCCCGGGATGAACTCTC-CA- 1278
||| ||||||| ||||| |||| ||||||||||||| ||| | ||| || | || ||
Sbjct 1198 GTAGTAGCCGCCTTGGTAGAGAGAAAAAGGCTCCAAATCGCTCATGAT-AA-TGTCACAA 1255
Query 1279 TACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTT-TGGAGTCTCAGATATG 1337
||| ||||||||||||||| || |||||||||| ||| | || ||||||||| || ||
Sbjct 1256 TACTAATGAGCGTGTGGTGGTTGGTTCCACAGTACGTTCT-TTATGGAGTCTCGGACGTG 1314
Query 1338 TTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCCTAGTGAGCTTAGGAGC 1397
|||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1315 TTCA---TGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTCCCTAGTGAGCTTAGGAGT 1371
Query 1398 GTTGGTATGGCTTTGAACCTAAGCATATACGGGG-CGGGAAACTACCTAAGCAGCTTTAT 1456
|||||||||||| |||| |||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 1372 GTTGGTATGGCTCTGAATCTAAGCATATACGGGGTCGG-AAACTTTCTAAGCAGCTTCAT 1430
Query 1457 GATATCAGTCATTGATAAAATCACGAACCAGTATGGTCAAAGGAGCTGGTTCGATAATGA 1516
||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1431 GATATCAATCATTGATAAAATCACGAGCCAGTCTGGTCAAACGAGCTGGTTCGATAATGA 1490
Query 1517 CTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTTGTCTCGGCTTCATTGG 1576
||| |||| |||||||||||||| |||||||||||||| ||||||||| ||| ||||||
Sbjct 1491 CTTAAACCATGCTCATCTAGATTATTTCTACTGGCTACTCGCTTGTCTCAGCTCCATTGG 1550
Query 1577 TTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACA 1617
||| | || |||||| |||||||||||||| ||| | ||||
Sbjct 1551 TTTAGTCTCCTACTTGTGGTTCGCCAAGTCGTATCTTTACA 1591
> Ahg339433 jgi|Araly1|339433|fgenesh1_pg.C_scaffold_2001532
Length=1350
Score = 695 bits (376), Expect = 0.0
Identities = 539/617 (87%), Gaps = 14/617 (2%)
Strand=Plus/Plus
Query 1028 CAGGTCAATCTCACCAGGACTCTTAGTTCCTGCAGCTACACTTCAAAGT-T-TCATAAAC 1085
||| ||||| ||| ||||||||||||| |||||||||||||| |||||| | || | |
Sbjct 741 CAGTTCAATTTCATCAGGACTCTTAGTCCCTGCAGCTACACTCCAAAGTATCTC-T-AGT 798
Query 1086 CTCTCAGTAGTCGTTTTCATCCCAATCTACGACCG-CTTACTCGTCCCAT-TCGCAAGGT 1143
|| ||| | |||||||||||||||||||||||||| ||| || ||||| | ||||||| |
Sbjct 799 CTATCAATGGTCGTTTTCATCCCAATCTACGACCGTCTT-CTTGTCCC-TATCGCAAGAT 856
Query 1144 CCTTCACTC-AAAACTCATCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTC 1202
|||| |||| ||||| ||||||| ||||||| ||| |||||||| | ||||||||||||
Sbjct 857 CCTTAACTCAAAAAC-CATCAGGAATCACAATGCTTCAAAGGATCGACACAGGGATTTTC 915
Query 1203 CTCTCCATTCTTGCTATGGTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCC 1262
||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||| ||||
Sbjct 916 CTCTCCATTCTTGCTATGGTAGTAGCCGCCTTGGTCGAGACCAAAAGGCTACAAACCGCT 975
Query 1263 CGGGATGAACTCTCCATACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTTT 1322
| ||||| || | || | ||||| |||||||||||| |||| ||||||||||||| |
Sbjct 976 CATGATGATGTCACAATTCTAATGAGTGTGTGGTGGCTGGTTCCGCAGTATGTTATCTAT 1035
Query 1323 GGAGTCTCAG-ATATGTTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCC 1381
|||||||| | | | ||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1036 GGAGTCTC-GAACGTCTTCACAATGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTTCC 1094
Query 1382 TAGTGAGCTTAGGAGCGTTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTA 1441
|||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||
Sbjct 1095 TAGTGAGCTTAGGAGCGTTGGTATGGCTCTGAATCTAAGCATATACGGGACCGGAAACTT 1154
Query 1442 CCTAAGCAGCTTTATGATATCAGTCATTGATAAAATCACGAACC-AGTATGGTCAAAGGA 1500
| |||||||||| ||||||||||||||||||||| |||| |||| || |||||||| ||
Sbjct 1155 CGTAAGCAGCTTCATGATATCAGTCATTGATAAAGTCACAAACCAAG-CTGGTCAAACGA 1213
Query 1501 GCTGGTTCGATAATGACTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTT 1560
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1214 GCTGGTTCAATAATGACTTGAACCAAGCTCATCTAGATTACTTCTACTGGCTACTCGCTT 1273
Query 1561 GTCTCGGCTTCATTGGTTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACAGCA 1620
||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1274 GTCTCAGCTTCATTGGTTTAGCCTCCTATTTATGGTTCGCCAAGTCATATGTCTACAACA 1333
Query 1621 GATCAAACACCTTTTAA 1637
|| ||||||||||||||
Sbjct 1334 GACCAAACACCTTTTAA 1350
Score = 385 bits (208), Expect = 7e-106
Identities = 244/261 (93%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 407 TCAGCTGCAAGAGACTATCTTCTTCTTCTCTCTTTATCTTGTAGCAATAGGACAAGGCGG 466
|||||| |||| |||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 387 TCAGCTCCAAGTGACTCTCTTCTTCTGCTCTCTGTATCTTGTAGCAATAGGACAAGGCGG 446
Query 467 TTACAACCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGATGGAAATGATCAT-AAAG 525
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 447 TTACACCCCGTGTATTAAGGTATTTGGAGCGGATCAATTCGATGGAAATGATC-TAAAAG 505
Query 526 AGGC-AAGAGACAAGAGTTCATTCTTCAACTGGTTGATGTTTGGAAACTGTATTAGCATA 584
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 506 AGGCAAAG-GACAAGAGTTCTTTCTTCAACTGGTTGATGTTTGGAAACTGTATTAGCATA 564
Query 585 TTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGAACCTAAGCTGGTCACTAGGGTTT 644
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 565 TTGACGACTCGTTTGGTCTCTACCTACATTCAAGAGAACTTAAGCTGGTCATTAGGATTT 624
Query 645 GGTATTCCTAGTGTTTCCATG 665
||||| || ||||||| ||||
Sbjct 625 GGTATCCCAAGTGTTTTCATG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5