BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72140.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926576 jgi|Araly1|926576|scaffold_202137.1 2567 0.0
> Ahg926576 jgi|Araly1|926576|scaffold_202137.1
Length=1712
Score = 2567 bits (1390), Expect = 0.0
Identities = 1609/1716 (94%), Gaps = 10/1716 (1%)
Strand=Plus/Plus
Query 40 TCTGAAACGAAATAACAAGAAGCAATGTCGACATCCATCGGCGATAATGAGACTGGAGCT 99
||||||||||||| | |||| ||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1 TCTGAAACGAAATTATAAGAGGCAATGTCGTCATCCATCGCCGATAATGAGACTGGAACT 60
Query 100 A-TAGTTTCAAACGAGAATGTCGAGTTTTCCGTCGATTTCCGAGGCAATCCATCTATCAG 158
| || || ||||||| |||||||| | ||||| ||||| | |||||| |||| |||||
Sbjct 61 ATTA-TTCCAAACGATAATGTCGAATACTCCGTTGATTTTCAAGGCAAGACATCAATCAG 119
Query 159 ATCCTCTTCCGGTGCATGGAAATCTTCTGGCTTCACCATGTGTGCGGAAGTTGCCGAGAA 218
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 120 ATCCTCCTCCGGTGCATGGAAATCCTCTGGCTTCACCATGTGTGCGGAAGTTGCGGAGAA 179
Query 219 ATTCGCCTACTTCGGTATCGCCTCGAATCTGATAACCTACTTCACCGAGGCGTTAGGAGA 278
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCGCCTACTTCGGGATCGCCTCGAATCTGATAACCTACTTCACCGAGGCGTTAGGAGA 239
Query 279 GTCGACGGCTGTTGCAGCGTCAAACGTTAACCTCTGGCTTGGGACGGCAGCTTTCTTGCC 338
||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct 240 GTCGACGGCGGTTGCAGCGTCAAACGTCAACCTTTGGCTCGGAACGGCAGCTTTTTTGCC 299
Query 339 TCTCATATGGGGTTCTATCGCCGACTCTTTTCTTGGCCGTTTCCGTACAATCCTCTTAAC 398
| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 300 TTTGATATGGGGTTCTATCGCCGACTCTTTTCTCGGCCGTTTTCGTACAATCCTCTTAAC 359
Query 399 CTCTTCTTTCTATATCATGGGACTTGGGCTGCTTACGTTTTCAGCAACGATTCCTTCTCT 458
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 360 CTCTTCTTTCTATATCATGGGACTTGGGCTGCTCACGTTTTCAGCGTCGATTCCTTCTCT 419
Query 459 TTGTAATGATCAAGAAACACGTGAGTCGTGCG-TCTCTCAGGTCAAAGTAATAATCTTCT 517
|||||| | |||||||| || ||||||||| | || |||| |||||||||||| ||||||
Sbjct 420 TTGTAAAGGTCAAGAAAAACATGAGTCGTGTGTTC-CTCAAGTCAAAGTAATAGTCTTCT 478
Query 518 TTTGTGCTCTCTACCTAATTGCTTTGGGAGAAGGAGGCTTCAAGGTATGTCTTCGAGCCT 577
||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||| |
Sbjct 479 TTTGTGCTCTCTATCTAATTGCTTTGGGCGAAGGAGGCTTTAAGGTATGTCTTAGAGCTT 538
Query 578 TTGGAGCAGATCAGTTTGATGAACAAGACCC-AAATGAGTCCAAAGCCAAGAGTTCTTAC 636
||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 539 TTGGAGCAGATCAATTTGATGAACACGACCCTAAA-GAGTCCAAAGCCAAGAGTTCTTAC 597
Query 637 TTTAACTGGTTGTATTTTGCTATATCAATCGGCATATTGACCACTC-GTCTGGTCACAAA 695
|||||||||||||| ||||| ||||||||||| ||||||||||||| || || |||||||
Sbjct 598 TTTAACTGGTTGTACTTTGCGATATCAATCGGTATATTGACCACTCGGT-TGATCACAAA 656
Query 696 TTATGTCCAAGAGAATCTGAGCTGGGCTTTAGGATATGCGATTCCATGTCTTTCTATGAT 755
||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 657 TTATGTCCAAGAGAATCTGAGCTGGACTTTAGGATATGGGATTCCATGTCTTTCCATGAT 716
Query 756 GCTTGCTCTATTCTTGTTCTTACTTGGAATCAAAACTTACCGCTTCAGCACCGGAGGAGA 815
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 717 GCTTGCTCTGTTCTTGTTCTTACTTGGAATCAAAACTTACCGCTTTAGCACTGGAGGAGA 776
Query 816 AGGAAGACAGGGCAAAAAACATGATAACCCTTTTGTTAGAATTGGCCGTGTTTTTGTGGC 875
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGGAAGACAAGGCAGAAAACATGATAACCCTTTTGTTAGAATTGGCCGTGTTTTTGTGGC 836
Query 876 TGCAGCTAGAAACCGGCGACAAACTCCTTCTGATACTTGTCTTCTTCTGCCTAAC-GAAA 934
|||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||
Sbjct 837 TGCAGCTAGAAACCGGCGACAAACTCCTGATGATACTTGCCTTCTTCTGCC-AACAAAAA 895
Query 935 GCACCAAGAAATTCAGATTCTTGGACAGAGCGGTGATTTCATGCGATTCATATGAAGTTG 994
| ||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||
Sbjct 896 GTTCCAAGAAATTCAGATTCCTAGACAGAGCGGTGATTTCGTGCGATTCATCTGAAGTTG 955
Query 995 AGGAAGCAAAAGCTGTGTTGAGTCTCATTCCAATTTGGTTGTGTAGTTTGGTGTTTGGCA 1054
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 956 AGGAAGCAAAAGCTGTGTTGAGTCTCGTTCCAATTTGGTTGTGTAGTTTGGTGTTTGGCA 1015
Query 1055 TTGTGTTTGCGCAATCTCCTACTTTCTTTACAAAGCAAGGATCTACAATGGATAGATCAA 1114
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 TTGTGTATGCGCAATCCCCTACTTTCTTCACAAAGCAAGGATCTACAATGGATAGATCAA 1075
Query 1115 TCTCATCAACACTCCAAGTCCCTGCAGCTACACTCCAATGCTTCATAAGCCTAGCAATCC 1174
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1076 TATCATCAACACTCCTAGTCCCTGCAGCTACACTCCAATGCTTCATAAGTCTAGCAATCC 1135
Query 1175 TCGTCTTCATCCCAATCTACGACCGTTTATTCGTCCCAATCGCACGATCAATCACTCGTA 1234
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1136 TCGTCTTCATCCCAATCTACGACCGTGTATTCGTCCCAATCGCACGATCAATCACTCGTA 1195
Query 1235 AACCAGCAGGAATTACAACCCTTCAGAGAATTTCCACCGGCATTTTCCTCTCAATTATTT 1294
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1196 AACCAGCAGGAATTACAACGCTTCAGAGAATTTCCACCGGCATTTTCCTCTCAATAATTT 1255
Query 1295 CAATGGTAATAGCTGCTTTGGTCGAGATGAAAAGACTCAAGACTGCTCGAGATCATGGAT 1354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1256 CAATGGTAATAGCTGCTTTGGTCGAGATGAAAAGACTCAAGACCGCTCGAGATCACGGAC 1315
Query 1355 TAGTTGATTCGCCTAAAGCCACGGTCCCGATGAGCGTTTGCTGGCTGATTCCACAATACA 1414
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1316 TAGTTGATTCGCCTAAAGCCACGGTTCCAATGAGCGTTTGCTGGCTGATTCCACAATACA 1375
Query 1415 TTCTCTTTGGAGTCTCTGACGTTTTCACTATGGTTGGTTTGCAAGAGTTTTTCTACGGAG 1474
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTCTCTTTGGAGTCTCCGACGTTTTCACTATGGTTGGTTTGCAAGAGTTTTTCTACGGAC 1435
Query 1475 AAGTCCCGCCACAGCTTAGGAGCATGGGACTGGCTCTATATCTAAGCATAATCGGCATAG 1534
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1436 AAGTCCCGCCAGAGCTTAGGAGCATGGGACTGGCTCTATATCTAAGCATAATCGGTATAG 1495
Query 1535 GAAACTTCTTGAGTAGCTTCATGGTATCAGTCATCGAGGAAGCCACAAGCCAGTCCGGTC 1594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1496 GAAACTTCTTGAGTAGCTTCATGGTATCGGTCATCGAGGAAGCCACAAGCCAGTCCGGTC 1555
Query 1595 AAGTGAGCTGGTTCTCTAATAACCTGAACCAGGCACATCTTGATTACTTCTACTGGCTAC 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AAGTGAGCTGGTTCTCTAATAACCTGAACCAGGCACATCTTGATTACTTCTACTGGCTAC 1615
Query 1655 TTGCTTGTCTCAGCTCCCTCGCCTTTATTTTTACTGTCTATTTTGCCAAGTCCTATCTCT 1714
||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||
Sbjct 1616 TTGCTTGTCTCAGCTCCCTCGCCTTCATTTTTATTGTCTATTTCGCCAAGTCTTATGTCT 1675
Query 1715 ACAACAGCCCAAAGTAGTCTCTCTAGCGATCTTGAG 1750
|||||||||||||||| ||||||||||||||||||
Sbjct 1676 ACAACAGCCCAAAGTAAACTCTCTAGCGATCTTGAG 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5