BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72150.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926577 jgi|Araly1|926577|scaffold_202138.1 1897 0.0
> Ahg926577 jgi|Araly1|926577|scaffold_202138.1
Length=1706
Score = 1897 bits (1027), Expect = 0.0
Identities = 1164/1230 (95%), Gaps = 10/1230 (1%)
Strand=Plus/Plus
Query 633 GAGGAGAAACCTGAAGAGAAAGCAGAGGTAACAACCGAGAAAGCATCCAGTGCCGAAGAA 692
|||||||||||||||||||||||||||||||| |||||||||||||| | ||| || |||
Sbjct 481 GAGGAGAAACCTGAAGAGAAAGCAGAGGTAACCACCGAGAAAGCATCTACTGCTGAGGAA 540
Query 693 GATGGAACCAAGACCGTGGAAGCAATCGAAGAATCTATCGTCTCTGTTTCACCACCTGAA 752
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GATGGAACCAAGACTGTTGAAGCAATCGAAGAATCAATCGTCTCTGTTTCACCACCAGAA 600
Query 753 TCCGCCGT-AGCACCTGTCGTGGTAGAGACTGTCGCCGTTGCTGAGGCAGAGCCAGTGGA 811
|||||||| | |||| ||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 601 TCCGCCGTCA-CACCGGTCGTGGTAGAGACTGTCGCCGTCGCTGAGCCAGAGCCAGTTGA 659
Query 812 GCCGGAAGAAGTCTCGATCTGGGGAGTTCCACTACTCCAAGACGAGAGATCTGACGTGAT 871
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GCCGGAAGAAGTCTCGATCTGGGGCGTTCCACTACTCCAAGACGAGAGATCTGACGTGAT 719
Query 872 CCTCACGAAATTCCTCCGTGCAAGAGACTTTAAGGTCAAAGAAGCTTTAACCATGCTTAA 931
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 CCTCACGAAATTCCTCCGTGCAAGAGACTTCAAGGTCAAAGAAGCTTTAACCATGCTTAA 779
Query 932 AAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAACTCGTTGAATCCG--G-AGA 988
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| | |||
Sbjct 780 AAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAGCTCGTCGAAGCCGCCGGAGA 839
Query 989 AGAAGTGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGGACACGT 1048
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGAAGCGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGGACACGT 899
Query 1049 CGTGATCTACAGTTCTTACGGTGAGTTTCAGAACAAGGAGCTTTTCTCCGACAAGGAGAA 1108
|||||||||||| || |||||||| || |||||||| || ||||||||||||||||||||
Sbjct 900 CGTGATCTACAGCTCCTACGGTGAATTCCAGAACAAAGAACTTTTCTCCGACAAGGAGAA 959
Query 1109 GCTTAACAAGTTCCTCAGCTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAGCTATTGA 1168
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTTAACAAATTCCTCAACTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAGCTATTGA 1019
Query 1169 TTTCAGCAACCCTGAAGCGAAGTCTTCGTTTGTGTTCGTCAGCGACTTCAGGAACGCTCC 1228
|||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1020 TTTCAGCAACCCCGAAGCGAAATCTTCGTTCGTATTCGTCAGCGACTTCAGGAACGCTCC 1079
Query 1229 AGGACTTG-GTAAAAGAGCCTTGTGGCAATTCATCAGACGCGCTGTTAAACAATTCGAGG 1287
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGGACTCAAG-AAAAGAGCGTTGTGGCAATTCATCAGACGCGCTGTTAAACAATTCGAGG 1138
Query 1288 ACAATTATCCTGAATTCGCCGCTAAAGAGCTATTCATCAATGTCCCATGGTGGTACATTC 1347
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAATTACCCCGAATTCGCCGCAAAAGAGCTATTCATCAATGTCCCATGGTGGTACATTC 1198
Query 1348 CATACTACAAAACATTCGGATCTATCATCACATCCCCAAGGACTAGGAGCAAGATGGTCC 1407
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 CTTACTACAAAACATTCGGATCTATCATCACATCGCCAAGGACTAGGAGCAAGATGGTCC 1258
Query 1408 TTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTGAACAAGTTC 1467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 TTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTGAACAAGT-C 1317
Query 1468 CCG-TTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCGAAGAAACCATAACGGAA 1526
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1318 CCGGTTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCCAAGAAACCATAACCGAA 1377
Query 1527 GCCATCGTTAAACCGGCAGCAAACTACACTATTGAATTGCCTGCTTCTGAGGCTTGCACG 1586
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1378 GCCATCGTTAAACCAGCAGCCAACTACACCATTGAATTGCCTGCTTCTGAGGCTTGCACA 1437
Query 1587 CTTTCATGGGAGCTTAGGGTTTTGGGTGCTGATGTGAGCTACGGAGCTCAGTTTGAGCCA 1646
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 CTTTCGTGGGAGCTTAGGGTTTTGGGTGCTGACGTGAGCTACGGAGCTCAGTTTGAGCCA 1497
Query 1647 ACCACCGAAGGAAGCTATGCTGTGATCGTCTCTAAGACACGGAAGATTGGATCAACCGAT 1706
||||| || |||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1498 ACCACTGAGGGAAGCTATGCTGTGATCGTCTCTAAAACCCGGAAGATTGGGTCAACCGAT 1557
Query 1707 GAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGATTGTGATCACAATC 1766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGATTGTGATCACAATT 1617
Query 1767 GACAACCAGACTTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAACTCAATAAAAGGTC 1826
|| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1618 GATAACCAGACTTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAACTCAACCAA-GGTC 1676
Query 1827 TGATCTTTGAAATCCAAATCCAAGGAAGAA 1856
||||||||||||||||||||||||||||||
Sbjct 1677 TGATCTTTGAAATCCAAATCCAAGGAAGAA 1706
Score = 586 bits (317), Expect = 2e-166
Identities = 455/516 (88%), Gaps = 31/516 (6%)
Strand=Plus/Plus
Query 78 ttctAAAATCAGACAAGAAAGATGGCTCAAGAGGAAGTACAGAAATCGGCTGATGTCGCT 137
||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2 TTCGAAGATCAGACAAG-AAGATGGCTCAAGAGGAAGTACAGAAATCAGCTGATGTTGCC 60
Query 138 GCTGCTCCGGTGGTGAAGGAGAAACCTATTACCGATAAGGAGGTTACTATTCCTACCCCT 197
||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GCTCCTCC---GGTGACGGAGAAACCTATTACCGATAAGGAGGTTACGGTTCCTACCCCT 117
Query 198 GTGGCAGAGAAAGAGGAAGTTGCTGCTCCTGTCTCTGATGAGAAGGCGGTTCCAGAGAAG 257
||||| ||||| |||||||| ||| |||||| ||| || ||||||||||| || ||||||
Sbjct 118 GTGGCTGAGAAGGAGGAAGTGGCTACTCCTGCCTCGGACGAGAAGGCGGTGCCGGAGAAG 177
Query 258 GAGGTGACTCCGGAGAAGGAAGCCCCAGCGGCGGAAGCGGAGAAATCTGTTTCGGTGAAG 317
|| | | | | | | | ||||||||||||||||||||||| ||||||||
Sbjct 178 GA-G-G--T---------G--G-CTC--CGGCGGAAGCGGAGAAATCTGTTCCGGTGAAG 219
Query 318 GAGGAAGAGACGGTTGTTGTAGCTGAGAAGGTTGTTGTTTTAACTGCTGAGGAAGTTCAG 377
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 220 GAGGAAGAGACAGTTGTTGTAGCTGAGAAGGTGGTTGTTTTAACGGCTGAGGAAGTTCAG 279
Query 378 AAGAAGGCACTTGAGGAGTTTAAGGAGCTTGTAAGGGAGGCTTTGAACAAACGTGAATTC 437
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 280 AAGAAAGCACTTGAGGAGTTTAAGGAGCTTGTGAGGGAGGCTTTGAACAAACGTGAATTC 339
Query 438 ACTGCTCCGGTGACGCCGGTTaaggaagagaaaacagaggagaagaaaacagaggaggaa 497
||||||||||||| | |||||||||| |||||||||||||| | || ||||||
Sbjct 340 ACTGCTCCGGTGA--------A-GGAAGAGAAACCAGAGGAGAAGAAACCGGAAGAGGAA 390
Query 498 actaaagaggaagagaaaacagaggagaagaaagaagagacaacgactgaggttaaggtt 557
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ACTAAAGCGGAAGAGAAAACAGAGGAGAAGAAAGAAGAGACAACGACTGAGGTTAAGGTT 450
Query 558 gaagaagagaaaCCGGCGGTTCCAGCGGCGGAGGAG 593
||||||||||||||||||||||||||||||||||||
Sbjct 451 GAAGAAGAGAAACCGGCGGTTCCAGCGGCGGAGGAG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5