BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72160.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219 2008 0.0
Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1 459 4e-128
> Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219
Length=1494
Score = 2008 bits (1087), Expect = 0.0
Identities = 1378/1510 (91%), Gaps = 53/1510 (4%)
Strand=Plus/Plus
Query 56 ATGGCTGAAGAACCTA-CTACTACCACTCTCGTTACACCGGAAAAGCTACC-TTCTCCGA 113
||||| || ||| | | |||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1 ATGGCGGAGGAA-CAACCTACTACCACTCTCGTTACACCGGAAAAGCTACCATCCTCAGA 59
Query 114 GCCTCACGCCTTCTGAAGTATCTGAATCTACTCAAGATGCCCTACCGACAGAGACAGAAA 173
|||||||||| | | || ||| || |||||||||| | |||||| |||| || |
Sbjct 60 -CCTCACGCCTCCGGTAGAATCGGAGCCTACTCAAGAAGTTCTACCG--AGAG--AG--A 112
Query 174 CTCTGGAGAAAGTGACTGAGACTAATCCACCGGAAACTGCAG-ATACCACCACCAAGCCA 232
|| | || | | ||||||||||| |||||| |||||| || ||||||||||||||
Sbjct 113 --CT---GTAACT-CCGGAGACTAATCCGCCGGAATCTGCAGAAT-CCACCACCAAGCCA 165
Query 233 GAAGAAGAAACCGCGGCAGAGCATCATCCACCGACAGTGACGGAAACAGAAACTGCATCG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 166 GAAGAAGAAACCGCGGCAGAGCATCATCCACCGACAGTGACGGAAACAGAAACAGCATCG 225
Query 293 ACGGAGAAACAAGAGGTTAAAGACG----A--AGCATCGCAGAAAGAAGTAGCTGAAGAG 346
||||||||||||||| | ||||| | | |||||||||| |||||||||||||||
Sbjct 226 ACGGAGAAACAAGAGCTCGGAGACGAATCATCATCATCGCAGAAGGAAGTAGCTGAAGAG 285
Query 347 AAAAAGAGTATGATTCCACAGAATCTTGGTTCATTCAAAGAAGAAAGCAGCAAACTTTCT 406
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 286 AAAAAGAGCATGATTCCACAGAATCTTGGTTCGTTCAAAGAAGAAAGCAGCAAACTTTCC 345
Query 407 GATCTATCTAATTCCGAGAAGAAATCACTCGATGAACTAAAACATCTAGTTCGAGAAGCT 466
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 346 GATCTATCAAACTCCGAGAAGAAATCACTCGATGAACTAAAACATCTTGTTCGAGATGCT 405
Query 467 CTAG------A-CAA-TCA-C-CAAT---T-----------CA-C--CAACACACCAGAA 499
||| | ||| ||| | |||| | || | |||||||||||||
Sbjct 406 TTAGACAATCACCAATTCAGCTCAATCCCTAAACCAGAAAACACCAACAACACACCAGAA 465
Query 500 GAAGTCAAGATTTGGGGGATTCCATTACTTGAAGACGATAGAAGCGACGTCGTTTTGTTA 559
|||||||||||||||||||| || || || |||||||||||||||||||||||||| |
Sbjct 466 GAAGTCAAGATTTGGGGGATCCCGTTGCTCGAAGACGATAGAAGCGACGTCGTTTTACTG 525
Query 560 AAATTCCTAAGAGCTAGGGAGTTCAAGGTGAAAGATTCGTTTGCTATGCTCAAGAACACA 619
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 526 AAATTCCTAAGAGCTAGGGATTTCAAGGTGAAAGATTCGTTGGCTATGCTCAAGAACACC 585
Query 620 ATCAAGTGGAGAAAG-GAGTTCAAGATCGATGAATTGGTCGAGGAAGATCTTGTGGATGA 678
| || ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 586 GTTAAATGGAG-AAGAGAGTTCAAGATCGATGAATTGGTTGAGGAAGAACTTGTGGATGA 644
Query 679 TCTTGACAAGGTTGTGTTTATGCATGGACATGACCGAGAAGGTCACCCTGTTTGTTACAA 738
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 645 TCTTGACAAGGTTGTGTTTATGCATGGACACGACCGAGAAGGTCACCCTGTGTGTTACAA 704
Query 739 TGTCTATGGTGAGTTTCAGAACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAA 798
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TGTCTATGGTGAGTTTCAAAACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAA 764
Query 799 GAGGAAACATTTCTTGAGGACTAGGATTCAGTTCTTGGAGAGGAGTATAAGGAAGCTAGA 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GAGGAAACATTTCTTGAAGACTAGGATTCAGTTCTTGGAGAGGAGTATAAGGAAGCTAGA 824
Query 859 TTTTAGCTCTGGTGGGGTTTCTACTATTTTTCAGGTTAATGATATGAAGAATTCTCCGGG 918
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 825 TTTTAGTTCTGGTGGGGTTTCTACTATTTTCCAGGTTAATGATATGAAGAATTCTCCGGG 884
Query 919 GTTAGGGAAGAAAGAGCTTAGATCAGCTACTAAGCAAGCTGTTGAGTTGCTTCAGGACAA 978
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 885 GTTGGGGAAGAAAGAGCTTAGATCAGCTACTAAGCAAGCTGTTGAGTTGCTTCAAGACAA 944
Query 979 TTACCCTGAGTTTGTCTTCAAACAGGCTTTTATCAATGTTCCTTGGTGGTACCTTGTGTT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TTACCCTGAGTTTGTCTTCAAACAGGCTTTTATCAATGTTCCTTGGTGGTACCTTGTGTT 1004
Query 1039 TTATACTGTGATTGGTCCGTTCATGACACCAAGATCAAAGAGCAAGCTTGTGTTTGCTGG 1098
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1005 TTACACTGTGATTGGTCCGTTCATGACACCAAGGTCAAAGAGCAAGCTTGTGTTTGCTGG 1064
Query 1099 TCCTTCGCGTTCAGCTGAAACCCTATTCAAATACATATCACCCGAGCAAGTTCCAGTACA 1158
||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1065 TCCATCACGTTCAGCTGAAACACTTTTCAAATACATATCACCCGAGCAAGTTCCAGTTCA 1124
Query 1159 ATATGGTGGATTGAGTGTTGATCCTTGCGACTGCAATCCAGACTTTTCGTTGGAAGATTC 1218
|| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1125 GTACGGAGGATTGAGTGTAGATCCTTGCGACTGCAACCCAGACTTTTCGTTGGAAGATTC 1184
Query 1219 AGCCTCTGAGATCACTGTTAAGCCCGGAACAAAACAAACTGTTGAGATCATAATCTATGA 1278
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCCTCAGAGATCACTGTTAAGCCTGGAACAAAACAAACTGTTGAGATCATAATCTATGA 1244
Query 1279 GAAATGTGAACTTGTGTGGGAGATAAGGGTAACTGGATGGGAAGTGAGCTACAAGGCTGA 1338
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1245 GAAATGTGAACTTGTGTGGGAGATAAGGGTAATTGGATGGGAAGTGAGCTACAAGGCCGA 1304
Query 1339 ATTTGTGCCGGAAGAGAAAGATGCTTACACGGTGGTTATACAAAAACCGAGGAAGATGAG 1398
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1305 ATTTGTGCCGGAAGAAAAAGATGCTTACACGGTGGTTATACAGAAACCAAGGAAGATGAG 1364
Query 1399 ACCATCCGATGAACCGGTGTTAACCCATAGCTTCAAAGTGAATGAGCTTGGCAAGGTTTT 1458
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACCGTCCGATGAACCGGTGTTAACCCATAGCTTCAAAGTGAATGAGCTTGGCAAGGTTTT 1424
Query 1459 ACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAAGCTCGTTTACAGGTTCAATGTCAA 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAAGCTCGTTTACAGGTTCAATGTCAA 1484
Query 1519 ACCTCTCTAA 1528
||||||||||
Sbjct 1485 ACCTCTCTAA 1494
> Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1
Length=2326
Score = 459 bits (248), Expect = 4e-128
Identities = 784/1032 (76%), Gaps = 80/1032 (8%)
Strand=Plus/Plus
Query 531 AAGACGATAGAAGCGACGTCGTTTTGTTAAAATTCCTAAGAGCTAGGGA-GTTCAAGGTG 589
||||||| |||| |||||||||||||||||| ||||||||||| || || || || |
Sbjct 1093 AAGACGACAGAACCGACGTCGTTTTGTTAAAGTTCCTAAGAGCAAGAGACTTTAAACCT- 1151
Query 590 AAAGATTCGTTTGCT--ATGCTCAAGAACACAAT-CAAGTGGAGAAAGGAGTTCAAGATC 646
|||| | || || |||||||| || ||| | ||| ||||||| || ||||| |||
Sbjct 1152 CAAGA--AGCTTACTCAATGCTCAACAAGACACTCCAA-TGGAGAATCGACTTCAACATC 1208
Query 647 GATGA-ATTGGTCGAGGAAGATCT-TGTGGATGATCTT-GACAAGGTTGTGTTTATGCAT 703
|| || || |||| ||| | || || || ||| || |||||||||||||| |||||
Sbjct 1209 GAAGAGCTT-CTCGATGAAAACCTCGGT-GACGAT-TTAGACAAGGTTGTGTTCATGCAA 1265
Query 704 GGACATGACCGAGA-AGGTCACCCTGTTTGTTACAATGTCTATGGTGAGTTTCAGAACAA 762
||||| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1266 GGACACGACAAAGACA-ATCATCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAA 1324
Query 763 GGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAAGAG-GAAACATTTCTTGAGGACT- 820
|| |||||| | || |||||||||||||| || ||||| ||| | |||||||| | |
Sbjct 1325 AGATCTTTATCAGAAAACGTTTTCTGATGAAGAGAAGAGAGAA-CGGTTCTTGAG-A-TG 1381
Query 821 -AGGATTCAGTT-CTTGGAGAGGAGTATAAGGAAGCTAGATTTT--AGCTCTGGTGGGGT 876
||||||||||| |||| | || ||||||||||| || |||||| |||| ||||| ||
Sbjct 1382 GAGGATTCAGTTTCTTGAAAAG-AGTATAAGGAATCTTGATTTTGTAGCT--GGTGGTGT 1438
Query 877 TTCTACTATTTTTCAGGTTAATGATATGAAGAATTCTCCGGGGT-TAGGGAAGAAAGAGC 935
||| || || | ||| || |||||| | ||||||||||| || | || |||| ||||
Sbjct 1439 TTCCACGATATGTCAAGTAAATGATCTTAAGAATTCTCCAGGACCT-GGTAAGACTGAGC 1497
Query 936 TTAGATCAGCTACTAAGCAAGCTGTTGAG-TTGCTTCAGGACAATTACCCTGAGTTTGTC 994
|||| | |||||||||||||||| || | || ||||| |||||||| ||||||||||||
Sbjct 1498 TTAGGTTAGCTACTAAGCAAGCTCTTCATCTT-CTTCAAGACAATTATCCTGAGTTTGTC 1556
Query 995 T-TCAAACAGGCTTTT-ATCAATGTTCCTTGGTGGTACCTTGTGTTTTATACTG-TGATT 1051
| | |||||| | || ||||||||||| ||||||||||||| ||| |||| | | |||
Sbjct 1557 TCT-AAACAGA-TATTCATCAATGTTCCATGGTGGTACCTTGCGTTCTATAG-GATTATT 1613
Query 1052 GGTCCGTTCATGACACCAAGATCAAAGAGCAAGCTTGTGTTT-GCTGGTCCTTCGCGTTC 1110
|||| || ||| ||| ||||||||||||||| || || ||| || |||||||| | ||
Sbjct 1614 AGTCCTTTTATGTCACAAAGATCAAAGAGCAAACTAGT-TTTCGCAGGTCCTTCAAGATC 1672
Query 1111 AGCTGAAACCCTATTCAAATACATATCACCCGAGCAAGTTCCAGTACAATATGGTGGATT 1170
|| |||||||| ||||| |||||||| || || || ||||| || || ||||||||| |
Sbjct 1673 TGCAGAAACCCTTTTCAAGTACATATCGCCAGAACATGTTCCGGTTCAGTATGGTGGACT 1732
Query 1171 GAGTGTTGATC-CTTGCGACTGCAA-TCCAGACTTTT-CGTTGGAAGAT-TCAGCCT-CT 1225
||||| ||| || |||||||||| ||| || ||| | || ||| || || | |
Sbjct 1733 AAGTGTGGATAACT-GCGACTGCAACTCC-GA-TTTCACACACGATGATATC-GC-TACC 1787
Query 1226 GAGATCACTGTTAAGCCCGGAACAAAACAAACTGTTGAGATCATAATCTATGAGAAATGT 1285
||||| ||| |||| || || |||||||| || ||||| || | || ||||||||
Sbjct 1788 GAGATTACTATTAAACCAACTACTAAACAAACCGTCGAGATTATTGTTTACGAGAAATGC 1847
Query 1286 --GAACTTGTGTGGGAGATAAGGGTAACTGG-ATGGGAAGTGAGC-TACA-AGGCTGAAT 1340
|| | |||||||||||||| ||| ||| |||||| || | || || | || |
Sbjct 1848 ACGATC--GTGTGGGAGATAAGAGTAG-TGGGATGGGAGGTTT-CATATGGAG-CAGAGT 1902
Query 1341 TTGTGCCGGAAGAG-AAAGATGCTTACACGGTGGTTATACAAAAACCGAGGAAGATGAGA 1399
|||||||||| || ||||| | || |||||| | || || ||||||||||||||||
Sbjct 1903 TTGTGCCGGA-GAATAAAGAAGGGTATACGGTGATCATTCAGAAACCGAGGAAGATGACT 1961
Query 1400 CC-ATCCGATGAACCGGT-GT-TAACCCATAGCTTCAAAGT-GAATGA-GCTTGGCAAGG 1454
| | |||||||||| || | | || ||||||||||| | | || | |||||| ||
Sbjct 1962 GCGAAAA-ATGAACCGGTAGTGT--CTCAGAGCTTCAAAGTTGGA-GAAG-TTGGCA-GG 2015
Query 1455 -TTTTACTCACAGTAGACAACCC-AACCTCTAAG-AAGAAGAA-GCTCGTTTACAGGTTC 1510
|||| || || || || ||||| || || || ||||| || ||| | |||||||||
Sbjct 2016 ATTTTGCTAACCGTGGATAACCCGAAT-TC-AACCAAGAA-AATGCTTATCTACAGGTTC 2072
Query 1511 AATGTCAAACCT 1522
|| || || |||
Sbjct 2073 AAGGTTAAGCCT 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5