BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72170.1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476349 jgi|Araly1|476349|fgenesh2_kg.2__1479__AT1G72170.1         699    0.0  


> Ahg476349 jgi|Araly1|476349|fgenesh2_kg.2__1479__AT1G72170.1
Length=461

 Score =  699 bits (378),  Expect = 0.0
 Identities = 437/465 (94%), Gaps = 5/465 (1%)
 Strand=Plus/Plus

Query  66   AAAATGGCGGAGAAAAAGGATAGTGTGCCACCGGAATACGATGTGAATGCTAAGTGGGAC  125
            |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| 
Sbjct  1    AAAATGGCAGAGAAAAAGGATAGTTTGCCACCGGAGTACGATGTGAATGCTAAGTGGGAT  60

Query  126  GCATGTCTCGATCTCACTGTCCGCCGCTTCGTTTACTCTTCCCTCGGCGGCGCATTTGCC  185
            |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct  61   GCATGTCTCGATCTCACTGTCCGCCGCTTCGTTTACTCTTCCCTTGGCGGTGCATTCGCC  120

Query  186  GGTCTTCTGTTCTTCAGGAGTCCTGTTACAAGATGGGCATCGATTGCTTTAGGTGCTGGA  245
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GGTCTTCTGTTCTTCAGGAGTCCTGTTACAAGATGGGCATCGATTGCTTTGGGTGCTGGA  180

Query  246  ATTGGTATTGGCTCTGCATATTCAGATTGTTCTCGTGCTTTTGATTCACCTTCTTCATCT  305
            ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||
Sbjct  181  ATTGGTATTGGCTCTGCATACACAGATTGTTCTCGTGCTTTTGATGCACCTTCTTCATCT  240

Query  306  TCAGCTAATTTAGCAGCTCCCAAGAATAATATTACAGAGACTTCTCCTGTATCTCAGGCT  365
            ||||| |||||| ||||||||||||||| ||   ||||||||||| ||||||||||||||
Sbjct  241  TCAGCCAATTTAACAGCTCCCAAGAATACTA---CAGAGACTTCTTCTGTATCTCAGGCT  297

Query  366  GCAGACGAGTAGACAATGTCGATAAAGTG-GAAGTTAGTAACACATCCAATGATCGGGGT  424
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  298  GCAGACGAGTAGACAATGTCGATAAAGTGTGAAGTTAGTAACACATCCAATGATCGGGGT  357

Query  425  GTTCAGAAACAGAGCTATTATCATGCAATGCTTTGTTGAATTGTTTCCTAAACCTGCAAA  484
             |||||||||||||||||||||| |||||| || |||||||||||| ||||||||| |||
Sbjct  358  ATTCAGAAACAGAGCTATTATCACGCAATGATT-GTTGAATTGTTTTCTAAACCTGGAAA  416

Query  485  GACAAGAGTCTATTGAGATAATGTCAAATGTAAAAACCttttttt  529
            ||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct  417  GACAAGACTCTTTTGAGATAATGTCAAATGTAAAAACCTTCTTTT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5