BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72175.1 Length=860 Score E Sequences producing significant alignments: (Bits) Value Ahg926580 jgi|Araly1|926580|scaffold_202141.1 939 0.0 > Ahg926580 jgi|Araly1|926580|scaffold_202141.1 Length=598 Score = 939 bits (508), Expect = 0.0 Identities = 570/600 (95%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 84 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 60 Query 144 ATTCCCACTTCACCGCTCCTTGTCAAGCCAATTGTTCCCATTGGTTCTGCGGGAACTGCA 203 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||| Sbjct 61 ATTCCCACTTCACCGCTCCATGTCAAGCCAATTGTTCTCATTGGTTCTGCGGAAATTGCA 120 Query 204 TTATGCTGGTGTGGAGGCATGGATCTACATTACAGCCATGTAAATGCCCTTTGTGTCGTC 263 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 TTATGCAGGTGTGGAGGCATGGATCTACATTGCAGCCATGTAAATGCCCTTTGTGTCGTC 180 Query 264 GTCATATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGTAATGAC-GCTACA 322 ||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||| Sbjct 181 GTCCTATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGGAATGACAG-TACA 239 Query 323 GTTAAGGAGGTTCTTGGTAATCTTGAAACTTACAACCGACTCTTTGGCGGGCGTTCAAGT 382 ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| | Sbjct 240 GTTGCGGAGGTTCTTGGTAATCTTGAAACGTATAACCGACTCTTTGGCGGGCGTTCAACT 299 Query 383 AGTTTAGTTCAGAGGATGCAAGACCTGCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 442 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 300 AGTTTACTTCAGAGGATGCAAGACCTTCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 359 Query 443 ATGGATCCACAAAGAACGCTTCCACTTGTCATTAGGGCTCGGGTTTATATCGCAATGATT 502 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 360 ATGGATCCGCAAAGAACGCTTCCACTTGTGATTAGGGCTCGGGTTTATATCGCAATGATT 419 Query 503 CTCAGTGCTGTTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTCTGGGGGTA 562 || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 420 CTGAGTGCTATTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTTTGGGGATA 479 Query 563 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATTTG-TTTCCTCCATGTTGCTGCTCT 621 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | Sbjct 480 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATT-GCTTTCCTCCATGTTGCTGCTTT 538 Query 622 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCGTGAATCAATGAGTGTCTTTGACA 681 |||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||| Sbjct 539 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCATGAATCAGTGAATGTCGTTGACA 598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31832635695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5