BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72175.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926580 jgi|Araly1|926580|scaffold_202141.1 939 0.0
> Ahg926580 jgi|Araly1|926580|scaffold_202141.1
Length=598
Score = 939 bits (508), Expect = 0.0
Identities = 570/600 (95%), Gaps = 4/600 (1%)
Strand=Plus/Plus
Query 84 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 60
Query 144 ATTCCCACTTCACCGCTCCTTGTCAAGCCAATTGTTCCCATTGGTTCTGCGGGAACTGCA 203
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 61 ATTCCCACTTCACCGCTCCATGTCAAGCCAATTGTTCTCATTGGTTCTGCGGAAATTGCA 120
Query 204 TTATGCTGGTGTGGAGGCATGGATCTACATTACAGCCATGTAAATGCCCTTTGTGTCGTC 263
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTATGCAGGTGTGGAGGCATGGATCTACATTGCAGCCATGTAAATGCCCTTTGTGTCGTC 180
Query 264 GTCATATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGTAATGAC-GCTACA 322
||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 181 GTCCTATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGGAATGACAG-TACA 239
Query 323 GTTAAGGAGGTTCTTGGTAATCTTGAAACTTACAACCGACTCTTTGGCGGGCGTTCAAGT 382
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 240 GTTGCGGAGGTTCTTGGTAATCTTGAAACGTATAACCGACTCTTTGGCGGGCGTTCAACT 299
Query 383 AGTTTAGTTCAGAGGATGCAAGACCTGCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 442
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 AGTTTACTTCAGAGGATGCAAGACCTTCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 359
Query 443 ATGGATCCACAAAGAACGCTTCCACTTGTCATTAGGGCTCGGGTTTATATCGCAATGATT 502
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 ATGGATCCGCAAAGAACGCTTCCACTTGTGATTAGGGCTCGGGTTTATATCGCAATGATT 419
Query 503 CTCAGTGCTGTTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTCTGGGGGTA 562
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 420 CTGAGTGCTATTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTTTGGGGATA 479
Query 563 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATTTG-TTTCCTCCATGTTGCTGCTCT 621
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 480 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATT-GCTTTCCTCCATGTTGCTGCTTT 538
Query 622 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCGTGAATCAATGAGTGTCTTTGACA 681
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||
Sbjct 539 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCATGAATCAGTGAATGTCGTTGACA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5