BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72180.1
Length=3593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476351 jgi|Araly1|476351|fgenesh2_kg.2__1481__AT1G72180.1 5238 0.0
> Ahg476351 jgi|Araly1|476351|fgenesh2_kg.2__1481__AT1G72180.1
Length=3539
Score = 5238 bits (2836), Expect = 0.0
Identities = 3319/3552 (93%), Gaps = 33/3552 (1%)
Strand=Plus/Plus
Query 21 tctcctctcttctcaaatctctctctctTTCGTATTTCTTGGAGACATCTTTCTCTGGAA 80
||| || ||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 10 TCT-CTTTCTTCTCTCCTCTCTCTCTCTTTCGTATTTCTTGGAGACATCTTTCTCTGTAA 68
Query 81 CTGTTCTTCATCGAATTCTATCTTTTGAGAGAAACTAAATTAAGTTGATAATCGAAGAAC 140
||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 69 CTGTTCTTCATCGAATTCTATCTTTTGAGAGAAACTAAA-TCAGCTGATAATCGAAGCAC 127
Query 141 TTCCTCGAAATTAGGACTTCTTC-TGCTTTTTGTTGTTTCCTAGAGATTTTCCTAGAACG 199
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 128 TTCCTCGAAATTAGGACTTCTTCTTGCTTTTTGTTGTTACCTAGAGATTTTCCTAGAAAG 187
Query 200 TGGTCCAAGAAAATCACACAAAAAGGTTCATTCCTTTTTTCTTACCAGAAACCACAAATC 259
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 188 TTGTCCAAGAAAATCACACAAAAAGGTTCATT-TTTTTTTCTTACCAGAAACCACAAATC 246
Query 260 AAAATCATCTCCCCTGTCTTTGTTTGAAATCTCTCAAATTTAAGAAGGATCATCCATTCA 319
||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 247 AAAATCATCTCCCCTGTTTTTATCTGAAATCTCTCAAATTTAAGAAGGATCATTCATTCA 306
Query 320 CTAACCTGAGATTTTGGATAGGTT-TCATCTATTTCAGGTGGGAATTCCAGTGCATCGAC 378
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 307 CCAACCTGAGATTTTGGAT-TGTTATCATCTATTTCAGGTGGGAATTCCAGTGCATCGAC 365
Query 379 CATGATCAACACCTAAACTACAAATTGACCGTTTTGCCCTTGGGAATCACTATAAATGTC 438
||||||||| |||||| || | |||||||||||||||||||| ||||||| |||||||||
Sbjct 366 CATGATCAAGACCTAACCTGCGAATTGACCGTTTTGCCCTTGAGAATCACCATAAATGTC 425
Query 439 GAGAAGACCAGACCTCCTACGTGGCAGCGTGGTCGCCACCGTGGCTGCCACGTTTCTCCT 498
|||||||||||||||||||||||||| || |||| ||||||||||||||| |||| |
Sbjct 426 GAGAAGACCAGACCTCCTACGTGGCAAAATGCTCGCTACCGTGGCTGCCACGATTCTGTT 485
Query 499 CTTC-ATTTTCCCGCCGAATGTTGAATCGACCGTTGAGAAACAAGCTCTGTTTCGCTTCA 557
| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 C-TCAATGTTCCCGCCAAATGTTGAATCGACCGTTGAGAAACAAGCTCTGTTTCGCTTCA 544
Query 558 AAAACCGCCTCGACGACTCTCACAACATTCTACAATCTTGGAAGCCTTCCGATTCACCAT 617
|||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 545 AAAACCACCTCGACGACCCTCACAACATTCTACAATCTTGGAAACCTTCGGATTCGCCGT 604
Query 618 GCGTGTTTCGCGGCATCACATGCGACCCGTTATCCGGCGAAGTCATCGGTATTTCTCTAG 677
|||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||
Sbjct 605 GCGTGTTTCGCGGCATAACATGCGATCCGTTATCCGGCGAAGTTATAGGTATTTCTCTAG 664
Query 678 GAAACGTAAATCTCTCCGGCACCATTTCTCCATCAATCTCAGCTCTCACAAAGCTCTCTA 737
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAAACGCAAATCTCTCCGGCACCATTTCTCCATCAATCTCAGCTCTCACAAAGCTCTCTA 724
Query 738 CGCTATCGCTTCCATCTAACTTCATCTCCGGAAGAATCCCGCCAGAGATAGTCAACTGCA 797
| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 CATTGTCACTTCCATCTAACTTCATCTCCGGAAGAATCCCGCCAGAGATAGTCAACTGTA 784
Query 798 AAAACCTTAAAGTTCTCAATCTCACCTCCAACAGACTCTCCGGAACAATCCCAAACCTTT 857
||||||| ||||| |||||||||||||||||| || ||||||| || |||||||||||||
Sbjct 785 AAAACCTGAAAGTCCTCAATCTCACCTCCAACCGAGTCTCCGGGACGATCCCAAACCTTT 844
Query 858 CTCCTCTAAAGTCCCTAGAAATTCTCGACATCTCCGGGAATTTTCTTAACGGAGAGTTTC 917
| ||||||||| | ||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 845 CCCCTCTAAAGAACTTAGAAATTCTCGACATCTCTGGGAACTTTCTTACCGGAGAGTTTC 904
Query 918 AAAGCTGGATTGGGAATATGAATCAGTTGGTTTCTCTCGGTCTTGGCAACAATCACTACG 977
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 905 AAAGTTGGATTGGGAATATGACTCAGTTGGTTTCTCTCGGTCTTGGCAACAATCACTACG 964
Query 978 AAGAAGGTATAATTCCTGAGAGTATTGGAGGTTTAAAGAAACTTACTTGGCTGTTCTTAG 1037
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 965 AAGAAGGTATGATTCCTGAGAGTATTGGAGGTTTAAAGAAACTGACTTGGCTGTTCTTAG 1024
Query 1038 CTCGCTCCAACTTGACCGGGAAGATTCCAAACTCGATCTTTGATCTGAATGCTCTCGACA 1097
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1025 CTCGCTCCAACTTGACCGGGAAGATTCCAAACTCTATCTTTGATCTGAATGCTCTCGACA 1084
Query 1098 CTTTCGACATCGCGAACAACGCAATCTCCGATGATTTCCCAATCTTAATCTCAAGATTGG 1157
||||||||||||| ||||||||||| || | |||||||||| |||| ||| |||||||||
Sbjct 1085 CTTTCGACATCGCAAACAACGCAATTTCTGGTGATTTCCCAGTCTTGATCACAAGATTGG 1144
Query 1158 TAAATCTCACCAAGATTGAGTTGTTCAACAACAGCTTAACAGGTAAAATCCCTCCGGAGA 1217
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1145 TAAATCTCACCAAGATTGAGTTGTTCAACAACAGATTAACCGGTAAAATCCCTCCCGAGA 1204
Query 1218 TAAAGAACTTGACTCGTTTACGCGAATTCGACATCTCTTCGAATCAGTTGAGCGGGGTTT 1277
|||||||||||||||||||||||||| |||| | |||||||||||||||||||| | ||
Sbjct 1205 TAAAGAACTTGACTCGTTTACGCGAAATCGATGTTTCTTCGAATCAGTTGAGCGGTGCTT 1264
Query 1278 TACCTGAAGAACTCGGAGTTTTGAAGGAGCTCAGAGTTTTCCACTGTCATGAAAACAACT 1337
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 TACCTGAAGAACTCGGAGTTTTGAAGGAGCTCAGAGTTTTCCACTGCCATGAAAACAACT 1324
Query 1338 TCACCGGCGAATTTCCTTCTGGTTTCGGCGATCTA-AGTCACCTCACTTCTCTTTCGATT 1396
| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1325 TTACCGGCGAATTCCCTTCTGGTTTCGGCGATCTACA-TCACCTCACTTCTCTTTCGATT 1383
Query 1397 TATAGAAACAACTTCTCCGGTGAATTTCCGGTTAACATCGGCCGGTTCTCGCCGCTCGAC 1456
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 1384 TATAGAAACAACTTCTCCGGTGAATTTCCGGTTAACATCGGTCGGTTCTCGCTGCTTGAC 1443
Query 1457 ACGGTTGATATATCTGAAAACGAGTTTACTGGTCCATTTCCAAGATTCTTATGCCAAAAC 1516
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1444 ACGGTTGACATATCTGAGAACGAGTTTACTGGTCCGTTTCCAAGATTCTTATGCCAAAAC 1503
Query 1517 AAGAAACTACAATTCTTGCTCGCCT-TGCAGAACGAGTTTTCCGGCGAGATTCCGAGATC 1575
||||||||||| |||||||||| || |||||||||| |||||||| ||||||||||||||
Sbjct 1504 AAGAAACTACAGTTCTTGCTCG-CTCTGCAGAACGATTTTTCCGGTGAGATTCCGAGATC 1562
Query 1576 TTACGGC-GAGTGCAAATCTCTATTGAGACTAAGGATTAACAACAACCGTCTAAGTGGTC 1634
||| || || || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1563 CTAC-GCTGATTGTAAATCTCTATTGAGACTAAGGATTAACAAAAACCGTCTAAGTGGTC 1621
Query 1635 AAGTTGTTGAAGGATTCTGGTCTCTACCGCTTGCTAAGATGATTGATCTCAGCGATAACG 1694
| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1622 ATGTTGCTGAAGGATTCTGGTCTCTACCACTTGCTAAGATGCTTGATCTCAGCGATAACG 1681
Query 1695 AACTCACCGGAGAGGTTTCTCCTCAGATTGGACTTTCAACAGAACTGAGTCAGCTCATTT 1754
|||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1682 AACTCACCGGAGAGATTTCTCCTCAGATCGGACTTTCAACGGAATTGAGTCAGCTCATTT 1741
Query 1755 TACAGAACAACAGATTTTCCGGCAAGATTCCTCGTGAGCTCGGAAGATTGACTAATATAG 1814
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1742 TGCAGAACAATAGATTTTCCGGCAAGATTCCTCGTGAACTCGGAAGATTGACGAATATAG 1801
Query 1815 AGAGGATTTATCTGAGCAACAACAATCTTTCCGGCGAAATTCCGATGGAAGTTGGAGATT 1874
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1802 AGAGGATTTATCTGAGCAACAACAAAATTTCCGGCGAAATTCCGACGGAAGTTGGAGATT 1861
Query 1875 TGAAAGAGTTATCATCTCTGCATCTTGAAAACAATTCATTAACAGGATTTATCCCTAAGG 1934
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1862 TGAAAGAGTTATCGTCTCTGCATCTTGAAAACAATTCATTAACAGGATTTATTCCTGTCG 1921
Query 1935 AATTGAAGAATTGTGTCAAACTTGTTGATCTGAATCTCGCTAAGAACTTCTTGACCGGAG 1994
|||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1922 AATTGACGAATTGTGTCAAACTTGTTGATCTAAATCTCGCCAAGAACTTCTTGACAGGAG 1981
Query 1995 AAATCCCTAACAGTTTATCTCAGATTGCTTCTTTAAACTCGTTGGATTTCTCAGGGAATA 2054
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1982 AAATCCCCAATAGTTTATCTCAGATTGCTTCTTTAAACTCGTTGGACTTCTCAGGGAACA 2041
Query 2055 GGCTAACAGGTGAAATCCCGGCGAGTCTTGTGAAGTTGAAGCTGAGTTTCATTGACTTGT 2114
|||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 2042 AGCTAACGGGTGAAATCCCGGCGAGTCTTGTGAAGTTGAAGCTGAGTTTTATCGATTTGT 2101
Query 2115 CTGGAAATCAACTTTCAGGAAGAATACCACCGGATCTTTTAGCGGTGGGAGGATCCACCG 2174
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 CTGGAAATCAACTTTCAGGGAGAATACCACCGGATCTTTTAGCGGTGGGAGGATCCACCG 2161
Query 2175 CGTTCTCACGTAACGAGAAGCTCTGTGTTGATAAAGAGAACGCTAAAACAAATCAGAACT 2234
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2162 CGTTCTCACGTAACGAGAAGCTCTGTGTTGATAAACAGAACGCTAAAACAAGCCAGAACT 2221
Query 2235 TGGGGTTGAGTATTTGCAGTGGCTACCAAAACGTGAAGAGGAATAGTTCACTCGATGGAA 2294
|||||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct 2222 TGGGGTTGAGCATTTGCAGTGGCGACCAACACGTGCAGAGGAATGGTTCACTCGATGGAA 2281
Query 2295 CACTCTTGTTCTTGGCTCTTGCAATTGTTGTGGTAGTACTAG-TGAGTGGTTTGTTCGCG 2353
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 2282 CACTCTTGTTCTTGGCTCTTGCAATTGTTGTGGTAGTACTCGTTG-CTGGTTTGTTCGCG 2340
Query 2354 TTGCGTTACAGAGTTGTGAAGATACGTGAGCTTGATTCGGAAAACAGAGATATCAACAAG 2413
||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||
Sbjct 2341 TTGCGTTACAGAGTTGTGAAGATGCGCGAGCTTGATTCGGAAAACAGAGATATTAATAAG 2400
Query 2414 GCGGATGCGAAGTGGAAAATCGCGTCTTTTCATCAAATGGAGTTGGACGTTGATGAGATT 2473
||||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 2401 GCGGATGCGAAATGGAAAATCGCGTCTTTTCATCAAATGGAGCTGGACGCTGACGAGATT 2460
Query 2474 TGTAGATTGGATGAAGATCATGTGATTGGATCTGGAAGTGCAGGAAAAGTGTACCGTGTT 2533
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 2461 TGTAGATTGGATGAAGATCATGTGATCGGAGCTGGAAGTGCGGGAAAAGTGTACCGTGTT 2520
Query 2534 GATTTGAAAAAAGGTGGCGGGACAGTGGCGGTTAAGTGGTTGAAGAGAGGAGGAGGAGAA 2593
||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 2521 GATTTGAAAAAGGGTGGCGGGACAGTGGCGGTTAAGTGGTTAAAGCGAGCAGGAGGAGAA 2580
Query 2594 GAAGGTGATGGAACAGAGGTCTCTGTTGCGGAGATGGAGATTCTTGGAAAGATTAGACAC 2653
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2581 GAAGTTGACGGAACAGAGGTCTCTGTTGCGGAGATGGAGATTCTTGGAAAGATCAGACAC 2640
Query 2654 AGAAACGTGTTGAAACTCTACGCTTGTTTGGTTGGAAGAGGTTCTAGATATTTGGTGTTT 2713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 AGAAACGTGTTGAAACTCTACGCTTGTTTGGTTGGAAGAGGTTCTAGATATTTGGTGTTT 2700
Query 2714 GAGTTCATGGAGAATGGGAACTTGTATCAAGCTCTTGGCAACAATATTAAAGGCGGTCTA 2773
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2701 GAGTTCATGGAGAATGGGAACTTGTATCAGGCTCTTCGCAACAATATTAAAGGCGGTCTA 2760
Query 2774 CCAGAACTGGATTGGCTCAAAAGATATAAAATTGCGGTGGGAGCGGCAAAAGGAATCGCA 2833
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2761 CCAGAATTGGATTGGCTCAAAAGATATAAAATCGCGGTGGGAGCGGCTAAAGGAATCGCA 2820
Query 2834 TATTTGCATCATGATTGTTGTCCACCCATCATTCACAGAGATATAAAGTCAAGCAACATT 2893
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 2821 TATTTGCATCATGATTGTTGTCCTCCAATCATTCACAGAGATATAAAGTCGAGCAACATT 2880
Query 2894 TTACTTGACGGAGATTATGAGTCGAAAATCGCAGATTTTGGAGTTGCAAAAGTTGCAGAC 2953
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2881 TTGCTTGATGGAGATTATGAGTCGAAAATTGCAGATTTTGGAGTTGCAAAAGTTGCAGAC 2940
Query 2954 AAAGGATATGAATGGAGCTGCGTTGCTGGAACTCATGGCTATATGGCTCCTGAGCTGGCT 3013
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2941 AAAGGATATGAATGGAGCTGTGTTGCTGGAACTCATGGCTATATGGCTCCTGAACTGGCT 3000
Query 3014 TACTCCTTCAAGGCAACGGAAAAGAGTGATGTGTACAGCTTCGGTGTGGTTCTTCTAGAG 3073
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 3001 TACTCCTTCAAGGCGACGGAGAAGAGTGACGTGTACAGCTTTGGTGTGGTTCTTCTAGAG 3060
Query 3074 CTAGTTACCGGTCTTCGGCCTATGGAAGACGAGTTTGGAGAGGGGAAAGACATTGTTGAC 3133
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 3061 CTAGTTACCGGTCTTCGGCCTATGGAAGATGAGTTCGGAGAGGGGAAAGACATTGTTGAC 3120
Query 3134 TATGTCTACTCTCAGATTCAACAAGATCCGA-GGAACCTTCAAAATGTTTTGGACAAGCA 3192
|||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||
Sbjct 3121 TATGTCTACTCTCAGATTCAGCAAGATC-GAAGGAACCTTCGAAATGTTTTGGACAAGCA 3179
Query 3193 AGTTTTGTCCACTTATATAGAAGAAAGCATGATTAGAGTTCTGAAGATGGGTCTTCTCTG 3252
||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 3180 AGTTTTGTCTTCTTATGTAGAAGAAAGCATGATTAGGGTTCTGAAGATGGGTCTTCTTTG 3239
Query 3253 CACTACGAAGCTCCCGAATCTCAGACCGAGTATGAGAGAGGTCGTGAGAAAGCTTGACGA 3312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3240 CACTACGAAGCTCCCGAATCTCAGACCGAGTATGAGAGAGGTCGTGAGAAAGCTTGACGA 3299
Query 3313 CGCTGATCCCTGTGTCTCCAATTCTCAAGACACAACTGGAAAGATTACAGTATAGATTGA 3372
||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 3300 TGCTGATCCCTGCGTCTCCAATTCTCTAGACAGAACCGGAAAGATTACAGTATAGATTGA 3359
Query 3373 TGA-TTCACCTACCACGTTTTAGTTATGGTTAAGACTAGTCACTGGTCAAAGAAGTATCA 3431
| | |||| || | | || ||||||||||||||||||||||| |||||||||
Sbjct 3360 T-ACTTCA---AC----T---A-TT-TGGTTAAGACTAGTCACTGGTCACAGAAGTATCG 3406
Query 3432 GTTTGTTCGAGACTTGAGTAAAAGTACGAGAGATTGGTTTTTGCTTATTTACTAATCCGT 3491
|||||||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 3407 GTTTGTTCGAAACTCGAGTAAAAGTACGAGAGATTAGTTTTTGTTTATTTACTAATCCGT 3466
Query 3492 TGTACTAAAAAGTTTGCAGTGAAAGGTCGGAGTTATCAGAAAGAGAC-TTGGATTAATTT 3550
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 3467 TGTACTAAAAAGTTTGCAGTGAAAGGTCGGAGTTATTAGAAAGAGACATTGGATTAATTT 3526
Query 3551 ATATTAACTACT 3562
||||||||||||
Sbjct 3527 ATATTAACTACT 3538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135713305318
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5