BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72190.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476352 jgi|Araly1|476352|fgenesh2_kg.2__1482__AT1G72190.1 1808 0.0
> Ahg476352 jgi|Araly1|476352|fgenesh2_kg.2__1482__AT1G72190.1
Length=1184
Score = 1808 bits (979), Expect = 0.0
Identities = 1103/1163 (95%), Gaps = 7/1163 (1%)
Strand=Plus/Plus
Query 13 ATCTGAGTGATGACGATAATGTTTAAAATCGCAAAAGCTACGTTACGAAGCAGAAACTCA 72
||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||
Sbjct 1 ATCTGAGTGATGACGATAATGTTCAAAATCGCGAAAGCTACACTACGAAACAGAAACTCA 60
Query 73 AGCGTCGCTTCGCTCTTCTACTCTATCCAAGCTCGCTCTATCTCCAGGCAAAGTAAAGTG 132
|||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 61 AGCGTCGCTTCGCTATTCTACTCTCTACAAGCTCGTTCTATCTCCAGGCAAAGTAAGGTG 120
Query 133 GTTAAGATTGAGAGAATAGTTGAGAAAGAAGACATGCATGTAACTCGTGTTC-TAT-TCT 190
||||||| |||||||| ||||||||||||||||||||||||||||||| || ||| | |
Sbjct 121 GTTAAGACAGAGAGAATGGTTGAGAAAGAAGACATGCATGTAACTCGTG-TCTTATGT-T 178
Query 191 GCGGTCC-TCACTTCCCTGATTCCTACAATTTCACCAGAGAATACTTGCAACCTTACCCT 249
||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 GCGGTCCGT-ACTTTCCTGATTCCTACAATTTCACCAGAGAGTACTTGCAACCTTACCCT 237
Query 250 TTTATTAAGGTTGATGTTGTCCATTACCGCGATGTCCCTGAGGTTATTAAGAACTATCAT 309
|||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 238 TTTATTCAGGTCGATGTTGTCCATTACCGTGATGTCCCTGAGGTTATAAAGAATTATCAT 297
Query 310 ATATGTGTGGCAATGACTATGCAAATGGATTCAAATGTTATATCTCGTGCAAGCAACATA 369
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 298 ATATGTGTGGCAATGACTATGCAAATGGATTCAAATGTTATATCTCGTGCGAGCAAGATG 357
Query 370 AAGCTTATTATGCAGTACGGTGTTGGTCTCGACGGTGTTGACATTGATGCTGCTACTAAA 429
||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 358 AAGCTTATTATGCAGTATGGTGTTGGTCTCGATGGTGTTGACGTTGATGCTGCTACTAAA 417
Query 430 CATGGGATTAAGGTCGCTAGAATTCCTAGTGAGGGTACTGGAAATGCTGCATCTTGCTCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CATGGGATTAAGGTCGCTAGAATTCCTAGTGAGGGTACTGGAAATGCTGCATCTTGCTCT 477
Query 490 GAGATGGCTATATATCTAATGCTGGGACTTCTTAAGAAACAGAACGAAATGCAAATATCT 549
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 478 GAGATGGCTATATATCTAATGCTGGGTCTTCTTAAGAAACAGAACGAAATGCAATTATCT 537
Query 550 CTGAGAAATAGACTACTTGGAGAACCAACCGGTGACACGCTTCTTGGTAAAACTGTATTT 609
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 CTGAGAAACAGATTACTTGGAGAACCAACCGGTGACACGCTTCTCGGTAAAACTGTATTT 597
Query 610 ATCTTAGGATATGGAAACATCGGAATAGAGCTGGCTAAACGGTTGAAGCCATTTGGGTCG 669
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 598 ATCTTAGGATATGGAAACATTGGAATAGAGCTGGCTAAACGGTTGAAGCCATTCGGGTCG 657
Query 670 AGAGTAATAGCCACGAAAAGATTCTGGCCTGCTTCTATCGTCGACTCAGACTCCAGGCTA 729
||||||||||||||||||||| |||||||||||| ||||||||||| || |||||| ||
Sbjct 658 AGAGTAATAGCCACGAAAAGAAGCTGGCCTGCTTCAATCGTCGACTCGGATTCCAGGGTA 717
Query 730 GTTGATGAGAAAGGTAGCCATGAAGACATTTACACATTCGCTGGCAAAGCCGATATAGTC 789
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 GTTGATGAGAAAGGTAGCCATGAAGACATTTACACATTCGCTGGCAAAGCTGATATAGTC 777
Query 790 GTTGTTTGTTTGAGGCTCAACAAAGAAACGGCTGAAATAGTGAATAAGGAGTTCATATGC 849
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 778 GTTGTTTGTTTGAGGCTCAACAAAGAAACGGCCGAAATAGTGAACAAGAAGTTCATATGC 837
Query 850 TCAATGAAAAAGGGTGCTCTTCTTGTAAATATTGCCCGAGGTGGTCTTATTAACTATGAA 909
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCAATGAAAAAGGGTACTCTTCTTGTAAATATTGCCCGAGGTGGTCTTATTAACTATGAA 897
Query 910 TCAGCTTTCCAGAATCTGGAGTCCGGTCATCTAGGAGGCCTTGGGATTGATGTGGCGTGG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCAGCTTTCCAGAATCTGGAGTCCGGTCATCTAGGAGGCCTTGGGATTGATGTGGCGTGG 957
Query 970 TCTGAGCCGTTTGATCCAAATGATCCTATTTTGAAGTTCAAAAACGTTATAATAACCCCT 1029
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 958 TCTGAGCCGTTTGATCCAAATGATCCGATTTTGAAGTTCAAAAACTTTATTATAACCCCT 1017
Query 1030 CATGTCGCTGGAGTTACCGAATATTCATATAGGTCCATGGCCAAGATTGTCGGAGACCTC 1089
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CACGTTGCTGGAGTTACCGAATATTCATATAGGTCCATGGCCAAGATTGTCGGAGACCTC 1077
Query 1090 GCGCTTCAGTTGCATGAAGGACTTCCTCTCACCGGAATCGAATTCGTCAATTAA-GAGGT 1148
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1078 GCACTTCAGTTGCATGAAGGACTTCCTCTCACCGGAATCGAATTTGTCAATTAATGAGGT 1137
Query 1149 AACATTTTCGTGTATTATCGTCA 1171
|||||||| ||||| ||||||||
Sbjct 1138 AACATTTTGGTGTAATATCGTCA 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5