BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72200.1 Length=1527 Score E Sequences producing significant alignments: (Bits) Value Ahg476353 jgi|Araly1|476353|fgenesh2_kg.2__1483__AT1G72200.1 1788 0.0 > Ahg476353 jgi|Araly1|476353|fgenesh2_kg.2__1483__AT1G72200.1 Length=1398 Score = 1788 bits (968), Expect = 0.0 Identities = 1276/1421 (90%), Gaps = 36/1421 (3%) Strand=Plus/Plus Query 103 AGAAATATAGAC-AA-GTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACTGACGAA 160 ||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 9 AGAAATA-AGACAAAGGTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACCGACGAA 67 Query 161 AGTTTGGTCCTCATGAACCCCAAAGGT-AGAACCAATCTCAACCGTTCAATCATCGGTGG 219 ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 68 AGTTTGGTCCTCATGAACCCCAAAGGTAATAA-TAATCTCAACCGTTCAATCATCGGTGG 126 Query 220 TCATGATCATGGCTCGATTCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 279 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCATGATCATGGCTCGATCCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 186 Query 280 TGGATTTAAATTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTTCCGGAGATAG 339 |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 187 CGGATTTCAGCTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTCCCGGAGATAG 246 Query 340 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGTGTTTTCTTCTT 399 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 247 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGCGTCTTCTTCTT 306 Query 400 TCTTGGGTTTTTCTCAGTCTATATCCGAAGATGTCTCGAGCGAGTCATGGGGATGGACTA 459 ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 307 TCTCGGGTTTTTCTCGGTCTATATCCGAAGATGTCTTGAGCGAGTCATGGGGATGGACTA 366 Query 460 TGGAAACCCCAACGACGCCGGAAACTGGCTTGCCACGAACCGGCAACAGGCGCGTGGGCT 519 ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 367 CGGAAACCCCAACGACGCCGGAAACTGGTTTGCCACAAACCTGCAACAGGCGCGTGGGCT 426 Query 520 CGACGCGTCGATCATCGAGACTTTTCCAACTTTCCAATACTCCACCGTGAAGACGCTTAG 579 |||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||||||| Sbjct 427 CGACGCGTCGGTCATCGAGACTTTTCCAACTTTCCGATACGCAACCGTGAAGGCGCTTAG 486 Query 580 GATCGGCAAAGAAGCACTCGAGTGTTCTGTTTGCTTAAACGAGTTCGAAGACGATGAAAC 639 ||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||| Sbjct 487 GATCGGCAAAGAAGCGCTTGAGTGTCCTGTTTGCTTAAACGAGTTTGAAGACGATGAAAC 546 Query 640 GCTGCGTTTAATTCCTAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 699 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GCTGCGTTTAATACCCAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 606 Query 700 CCGCTCTCACACCACGTGTCCTCTTTGCCGCGCTGATCTTATCCCCGTACCGGGTGAATC 759 || ||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||||| | Sbjct 607 CCACTCTCACGCCACGTGTCCTCTATGCCGCGCTGATCTTGTACCCGTGCCGGGTGAACC 666 Query 760 CATAGTCTCTATTCAAATACCTGGTTTAGTTAACGATCCTCCTGGTTCTGATCCGAACGG 819 ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| Sbjct 667 CATCGTCTCTATTCAAATACCCGGTTTAGTTAACGATCCTCCCGGTTCTGATCCGAGCGG 726 Query 820 TGATCGGATTAGA-TCTTTAGGTTCTCCTGATGCGCGATTGATTGAGTCAGTGGCGTTAA 878 ||||||||||||| | |||||||||||| || || ||||||||||| || |||||||| | Sbjct 727 TGATCGGATTAGAGT-TTTAGGTTCTCCGGACGCACGATTGATTGACTCGGTGGCGTTGA 785 Query 879 CTTGTAACCAGAGCATGCCACGTAGGTCTATGTCGACCGGATGGAATTTAGCTGGAATGT 938 ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 786 CTTGTAATCAGAGCATGCCACGTAGGTCTATGTCTACCGGATGGAATTTAGCCGGAATGT 845 Query 939 TCACGAATTCTGACCGGACCGGTCAACATTCAGAGAATCTCGACCGGTTCACGCTTAGAT 998 ||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||| || Sbjct 846 TCACGAATTCTGATCGGACCGGTCAACATTCAGGGAATCTAGACCGATTCACGCTTAAAT 905 Query 999 TACCACAAGACATACATAATAAGTTAGTGAATCCCAACCTTTCAAAAGTTCATGTGGCCT 1058 |||| |||||||| || |||||| |||||||||||| ||||||||||| || ||| | Sbjct 906 TACCGCAAGACATTCACAATAAGCTAGTGAATCCCAGCCTTTCAAAAGGCCACGTGTTGT 965 Query 1059 TACCTCAGGTGATGAGTTCAACGAGAGGATATAGAACCGGGAGCTTAGGGAGTGAGAGAA 1118 ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||| ||| Sbjct 966 TACCTCATGTGATGAGTTCAGCGAGAGGATACAGAACCGGAAGCTTAGGAAGTGAGCGAA 1025 Query 1119 ATTATTTTTATTATGAACGGTTCGACCAAGATGGCCGGTTAGATCGAAGACCATTCTCCA 1178 | || ||||| |||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 1026 ACTACTTTTACTATGAACGGTTCGACCAAGATGGCCGGTTAGACCGTAGACCATTCTCAA 1085 Query 1179 TAACTCCTCCGTACCGGACAAGTTCGATCAATCACATGTCTCCAGGTGGCAGTGGTGGTG 1238 |||||||||| ||||||||| |||| |||||| ||| || ||||||| |||| ||| | Sbjct 1086 TAACTCCTCCATACCGGACAGGTTCAATCAATAACACATCACCAGGTGACAGTAGTGATC 1145 Query 1239 ATAAGGTGCGTGCTAGTTCACCCAAAAGTTTGCTTCTAGCTATGCGATCGCCGTTCGATC 1298 || | |||||||| ||||||||||||||||||||||||| ||| ||| |||||||||| Sbjct 1146 AT--G-TGCGTGCTGGTTCACCCAAAAGTTTGCTTCTAGCGATGAAATCACCGTTCGATC 1202 Query 1299 GATTATTTCTTGGAAAGAACAACAACGTCGGGGAAAATTCTTCGGATCACCTTCGTTCCT 1358 ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| Sbjct 1203 GATTATTTCTTGGAAAGAACAACAACGTCGGTGAGCGTTCGTCGGATCACCTTCGTTCCG 1262 Query 1359 GTGATGCTACTCCGTCAAATACTGTATAATTTGGTTATTGAGAAAGTGTCTCTGTACATA 1418 | |||||||| ||||| |||||||| |||||||||||| |||||||| | |||| ||| Sbjct 1263 GCGATGCTACACCGTCGAATACTGTGTAATTTGGTTATCGAGAAAGT-T-TCTG--CAT- 1317 Query 1419 TCTTTATTTTCTTTCTGCATTTTTCAGTTTCAATTATAATGTCCCGGAACAATCGAACAT 1478 |||| | |||| | | | || ||||||| |||||||||||||||| Sbjct 1318 TCTTCAGTTTC-------A------A----C--TT-TAATGTCTCGGAACAATCGAACAT 1357 Query 1479 ACGAATTATGGTTTAATACGA-CATTTATGAAATTTTGGGG 1518 |||||||||||||||||| || ||||||||||||||| ||| Sbjct 1358 ACGAATTATGGTTTAATAGGAACATTTATGAAATTTTTGGG 1398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57173457745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5