BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72200.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476353 jgi|Araly1|476353|fgenesh2_kg.2__1483__AT1G72200.1 1788 0.0
> Ahg476353 jgi|Araly1|476353|fgenesh2_kg.2__1483__AT1G72200.1
Length=1398
Score = 1788 bits (968), Expect = 0.0
Identities = 1276/1421 (90%), Gaps = 36/1421 (3%)
Strand=Plus/Plus
Query 103 AGAAATATAGAC-AA-GTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACTGACGAA 160
||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 9 AGAAATA-AGACAAAGGTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACCGACGAA 67
Query 161 AGTTTGGTCCTCATGAACCCCAAAGGT-AGAACCAATCTCAACCGTTCAATCATCGGTGG 219
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 68 AGTTTGGTCCTCATGAACCCCAAAGGTAATAA-TAATCTCAACCGTTCAATCATCGGTGG 126
Query 220 TCATGATCATGGCTCGATTCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 279
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCATGATCATGGCTCGATCCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 186
Query 280 TGGATTTAAATTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTTCCGGAGATAG 339
|||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 187 CGGATTTCAGCTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTCCCGGAGATAG 246
Query 340 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGTGTTTTCTTCTT 399
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 247 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGCGTCTTCTTCTT 306
Query 400 TCTTGGGTTTTTCTCAGTCTATATCCGAAGATGTCTCGAGCGAGTCATGGGGATGGACTA 459
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 307 TCTCGGGTTTTTCTCGGTCTATATCCGAAGATGTCTTGAGCGAGTCATGGGGATGGACTA 366
Query 460 TGGAAACCCCAACGACGCCGGAAACTGGCTTGCCACGAACCGGCAACAGGCGCGTGGGCT 519
||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 367 CGGAAACCCCAACGACGCCGGAAACTGGTTTGCCACAAACCTGCAACAGGCGCGTGGGCT 426
Query 520 CGACGCGTCGATCATCGAGACTTTTCCAACTTTCCAATACTCCACCGTGAAGACGCTTAG 579
|||||||||| |||||||||||||||||||||||| |||| | ||||||||| |||||||
Sbjct 427 CGACGCGTCGGTCATCGAGACTTTTCCAACTTTCCGATACGCAACCGTGAAGGCGCTTAG 486
Query 580 GATCGGCAAAGAAGCACTCGAGTGTTCTGTTTGCTTAAACGAGTTCGAAGACGATGAAAC 639
||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 487 GATCGGCAAAGAAGCGCTTGAGTGTCCTGTTTGCTTAAACGAGTTTGAAGACGATGAAAC 546
Query 640 GCTGCGTTTAATTCCTAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 699
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCTGCGTTTAATACCCAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 606
Query 700 CCGCTCTCACACCACGTGTCCTCTTTGCCGCGCTGATCTTATCCCCGTACCGGGTGAATC 759
|| ||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||||| |
Sbjct 607 CCACTCTCACGCCACGTGTCCTCTATGCCGCGCTGATCTTGTACCCGTGCCGGGTGAACC 666
Query 760 CATAGTCTCTATTCAAATACCTGGTTTAGTTAACGATCCTCCTGGTTCTGATCCGAACGG 819
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 667 CATCGTCTCTATTCAAATACCCGGTTTAGTTAACGATCCTCCCGGTTCTGATCCGAGCGG 726
Query 820 TGATCGGATTAGA-TCTTTAGGTTCTCCTGATGCGCGATTGATTGAGTCAGTGGCGTTAA 878
||||||||||||| | |||||||||||| || || ||||||||||| || |||||||| |
Sbjct 727 TGATCGGATTAGAGT-TTTAGGTTCTCCGGACGCACGATTGATTGACTCGGTGGCGTTGA 785
Query 879 CTTGTAACCAGAGCATGCCACGTAGGTCTATGTCGACCGGATGGAATTTAGCTGGAATGT 938
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 786 CTTGTAATCAGAGCATGCCACGTAGGTCTATGTCTACCGGATGGAATTTAGCCGGAATGT 845
Query 939 TCACGAATTCTGACCGGACCGGTCAACATTCAGAGAATCTCGACCGGTTCACGCTTAGAT 998
||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct 846 TCACGAATTCTGATCGGACCGGTCAACATTCAGGGAATCTAGACCGATTCACGCTTAAAT 905
Query 999 TACCACAAGACATACATAATAAGTTAGTGAATCCCAACCTTTCAAAAGTTCATGTGGCCT 1058
|||| |||||||| || |||||| |||||||||||| ||||||||||| || ||| |
Sbjct 906 TACCGCAAGACATTCACAATAAGCTAGTGAATCCCAGCCTTTCAAAAGGCCACGTGTTGT 965
Query 1059 TACCTCAGGTGATGAGTTCAACGAGAGGATATAGAACCGGGAGCTTAGGGAGTGAGAGAA 1118
||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||| |||
Sbjct 966 TACCTCATGTGATGAGTTCAGCGAGAGGATACAGAACCGGAAGCTTAGGAAGTGAGCGAA 1025
Query 1119 ATTATTTTTATTATGAACGGTTCGACCAAGATGGCCGGTTAGATCGAAGACCATTCTCCA 1178
| || ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1026 ACTACTTTTACTATGAACGGTTCGACCAAGATGGCCGGTTAGACCGTAGACCATTCTCAA 1085
Query 1179 TAACTCCTCCGTACCGGACAAGTTCGATCAATCACATGTCTCCAGGTGGCAGTGGTGGTG 1238
|||||||||| ||||||||| |||| |||||| ||| || ||||||| |||| ||| |
Sbjct 1086 TAACTCCTCCATACCGGACAGGTTCAATCAATAACACATCACCAGGTGACAGTAGTGATC 1145
Query 1239 ATAAGGTGCGTGCTAGTTCACCCAAAAGTTTGCTTCTAGCTATGCGATCGCCGTTCGATC 1298
|| | |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1146 AT--G-TGCGTGCTGGTTCACCCAAAAGTTTGCTTCTAGCGATGAAATCACCGTTCGATC 1202
Query 1299 GATTATTTCTTGGAAAGAACAACAACGTCGGGGAAAATTCTTCGGATCACCTTCGTTCCT 1358
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1203 GATTATTTCTTGGAAAGAACAACAACGTCGGTGAGCGTTCGTCGGATCACCTTCGTTCCG 1262
Query 1359 GTGATGCTACTCCGTCAAATACTGTATAATTTGGTTATTGAGAAAGTGTCTCTGTACATA 1418
| |||||||| ||||| |||||||| |||||||||||| |||||||| | |||| |||
Sbjct 1263 GCGATGCTACACCGTCGAATACTGTGTAATTTGGTTATCGAGAAAGT-T-TCTG--CAT- 1317
Query 1419 TCTTTATTTTCTTTCTGCATTTTTCAGTTTCAATTATAATGTCCCGGAACAATCGAACAT 1478
|||| | |||| | | | || ||||||| ||||||||||||||||
Sbjct 1318 TCTTCAGTTTC-------A------A----C--TT-TAATGTCTCGGAACAATCGAACAT 1357
Query 1479 ACGAATTATGGTTTAATACGA-CATTTATGAAATTTTGGGG 1518
|||||||||||||||||| || ||||||||||||||| |||
Sbjct 1358 ACGAATTATGGTTTAATAGGAACATTTATGAAATTTTTGGG 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5