BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72210.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339443 jgi|Araly1|339443|fgenesh1_pg.C_scaffold_2001542 765 0.0
Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057 244 1e-63
> Ahg339443 jgi|Araly1|339443|fgenesh1_pg.C_scaffold_2001542
Length=561
Score = 765 bits (414), Expect = 0.0
Identities = 471/499 (94%), Gaps = 1/499 (0%)
Strand=Plus/Plus
Query 740 AAAGGGGAGATCAAGCATCGATAGTAGGCGGAGCCATTAACTACTTAAAGGAGCTTGAGC 799
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 63 AAA-GGGAGATCAAGCGTCGATAGTAGGCGGAGCCATTAATTACTTAAAGGAGCTTGAGC 121
Query 800 ATCATTTACAATCAATGGAACCTCCGGTTAAGACCGCCACAGAAGACACCGGAGCCGGCC 859
||||||||||||||||||| |||||||| |||||| || ||||||| ||||||| |||
Sbjct 122 ATCATTTACAATCAATGGAGCCTCCGGTCAAGACCACCGTAGAAGACGCCGGAGCGGGCT 181
Query 860 ACGACCAGACCAAAACAACCTCGGCTAGTTCGTCGGGACCATTCTCGGATTTCTTTGCAT 919
|||||||| ||| |||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct 182 TCGACCAGATCAACACAACCGCAGCTAGCTCATCGGGACCATTCTCGGATTTCTTTGCAT 241
Query 920 TTCCTCAGTACTCGAACCGGCCTACCTCTGCGGCGGCGGCTGAGGGGATGGCGGAGATAG 979
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 242 TTCCTCAGTACTCGAACCGGCCTACGTCTGCGGCGGCGGCTGAGGGGATGGCGGAGATAG 301
Query 980 AGGTAACGATGGTAGAGAGCCATGCGAGTCTGAAAATACTTGCGAAAAAGAGACCGAGAC 1039
|||| |||||||| |||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 302 AGGTGACGATGGTGGAGAGCCATGCGAGTCTGAAGATACTTGCTAAAAAGCGACCGAGAC 361
Query 1040 AGCTTCTTAAACTGGTCTCATCGATACAGAGCCTAAGGCTCACTCTTCTCCATCTAAACG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 AGCTTCTTAAACTGGTCTCATCGATACAGAGCCTAAGGCTCACTCTTCTCCATCTCAACG 421
Query 1100 TCACAACTCGAGACGACTCCGTCCTCTATTCCATCAGCGTCAAGGTTGAAGAAGGGAGCC 1159
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCACCACTCGAGACGACTCCGTCCTCTATTCCATCAGCGTCAAGGTTGAAGAAGGGAGCC 481
Query 1160 AATTGAATACAGTAGAAGATATTGCAGCAGCTGTGAATCAAATCCTAAGGAGGATCGAAG 1219
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AATTGAATACAGTGGAAGATATTGCAGCAGCTGTGAATCAAATCCTAAGGAGGATCGAAG 541
Query 1220 AAGAGTCATCCTTTAGCTA 1238
|||| ||||||||||||||
Sbjct 542 AAGAATCATCCTTTAGCTA 560
> Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057
Length=939
Score = 244 bits (132), Expect = 1e-63
Identities = 201/233 (86%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 590 ggaggaaaaggaggaggacgag-gagTAGCAAGAACAAAGAAGAGATCGAGAACCAGAGG 648
||||||| |||||||| ||||| | | |||||||||| ||||||||||||||||||||
Sbjct 284 GGAGGAAGAGGAGGAGAACGAGAAACT-GCAAGAACAAGGAAGAGATCGAGAACCAGAGA 342
Query 649 ATGACTCACATCGCCGTTGAAAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCCGTT 708
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 343 ATGACTCACATCGCCGTCGAGAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCTGTG 402
Query 709 CTCCGGTCTCTCATGCCACCTTAT--TATGCTCAAAGGGGAGATCAAGCATCGATAGTAG 766
||||| ||||| ||||| || | ||||||||||| ||||||||||| ||||||||||
Sbjct 403 CTCCGTTCTCTAATGCCG--TTGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAG 460
Query 767 GCGGAGCCATTAACTACTTAAAGGAGCTT-GAGCATCAT-TTACAATCAATGG 817
| ||||| ||||||| | | |||||| || |||||| || |||||||| ||||
Sbjct 461 GAGGAGCTATTAACTTCGTGAAGGAG-TTAGAGCAT-ATCTTACAATCTATGG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5