BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72220.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926585 jgi|Araly1|926585|scaffold_202146.1 1598 0.0
> Ahg926585 jgi|Araly1|926585|scaffold_202146.1
Length=1321
Score = 1598 bits (865), Expect = 0.0
Identities = 1183/1328 (89%), Gaps = 55/1328 (4%)
Strand=Plus/Plus
Query 182 TGTTTTGAGTGTTCTCTTTAATGGCGAGGAAGAAGCATCGAAAGCTCTTCCCTACCTTAG 241
|||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 TGTTTTGATTGTTTTCTTTAATGGCGAAGAAGAAGCATCGCAAGCTCTTCCCTACCTTAG 60
Query 242 CATCAGAGACAAACAAAACGTTAGACTGCTCGAACGGAGTCTGCGACCCGATTTGCCCTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCAGAGACAAACAAAACGTTAGACTGCTCGAACGGAGTCTGCGACCCGATTTGCCCTT 120
Query 302 ACAATTGCTATCCAGAACCCGATTACTACACCATATCACCACAGCTACCTCCATGGTCAT 361
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 121 ACAATTGCTATCCAGAACCCGATTACTCCGCCATATCACCACAGCTCCCTCCATGGTCAT 180
Query 362 CGTCACCA-CAACCATCTCCATGTCCATCTCCATCTATCTCAGCCGTTTATCTACCATCT 420
|||||||| | |||||||||| |||||||||||| |||||||||||||| | |||||||
Sbjct 181 CGTCACCAGCT-CCATCTCCATCTCCATCTCCATCAATCTCAGCCGTTTACCAACCATCT 239
Query 421 CAAGACTCTTCATCTTCCTTAGACGCCATATCCATCATCACCATAACCGGTGCGGTCTTA 480
||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 240 CAAAACTCATCATCTTCCTTGGACGCCATAAGCATCATCACCATAACCGGTGCGGTCTTA 299
Query 481 GCCATCCTTTTAACCGGATTCTTTCTTGTAGCGAAATTCTTTTCAGACAGCGTAAACCGT 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GCCATCCTTTTAACCGGATTCTTTCTTGTAGCGAAATTCGTTTCAGACAGCGTAAACCGT 359
Query 541 GTCAACCAAGGAACATATCAATCCGATAACGAAGACAACGACACGGTAATGG-AGGAAGA 599
| |||||| |||| |||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 360 GACAACCACGGAAGATATCAGTCCGATAACGAAGACAACGACACGGTAATGGGAG-AAGA 418
Query 600 GTTTCAAGATAGGGAACAAGTGGATCACCCAATATGGTTAATAAGAACAACAGGTCTACA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 GTTTCAAGATAGGGAACAAGTGGATCACCCAATATGGTTAATCAGAACAACAGGTCTACA 478
Query 660 ACAATCGATCATTAACTCGATTACAATCTGTAATTACAAGAGAGGAGATGGTTTAATCGA 719
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 ACAATCGATCATAAACTCGATTACGATCTGTAATTACAAGAGAGGAGATGGTTTAATCGA 538
Query 720 GAGAACAGATTGTCCAGTTTGTTTAAACGAGTTTGAAGAAGATGAGAGTCTTAGGTTATT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGAACAGATTGTCCTGTTTGTTTAAACGAGTTTGAAGAAGATGAGAGTCTTAGGTTATT 598
Query 780 GCCTAAATGTAACCACGCTTTTCACATCTCTTGTATTGATACTTGGCTTAGTTCTCACAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCCTAAATGTAACCACGCTTTTCACATCTCTTGTATTGATACTTGGCTTAGTTCTCACAC 658
Query 840 CAATTGTCCTCTGTGTCGTGCTGGTATTGCGATGATTAGTGTCACCACTCCACGGTATTC 899
|| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 659 CAGTTGTCCTCTGTGTCGTGCTGGTATTGCGATGATCAGTGTTACCACTCCACGGTGTTC 718
Query 900 TGGTCCGGTTGAAGTAACTCCCGGAGGA-TCAGGTTCACATTTGGAGAACGATGGAGTTG 958
|||||||| || |||||||| |||||| | ||| ||||||||||| |||||||||||||
Sbjct 719 CGGTCCGGTCGATGTAACTCCGGGAGGACT-AGGCTCACATTTGGAAAACGATGGAGTTG 777
Query 959 ATGAAGAAGATCATGGAG-AGATTGAAA-ACAGAGT--TGATTCTGATTTTAAAGAGAGT 1014
|||||||| ||| | | | ||| | | |||| ||| |||||||| ||||||||
Sbjct 778 GTGAAGAAGGTCAAG-ATCATCTTGGGAGAGAGAGGGATGAATCTGATTTCAAAGAGAGG 836
Query 1015 GATGATTCAGACAT-A-AGA----A-TTGAGATTTA----T--AGATT--T-GA--TTC- 1055
||||||||||||| | ||| | || |||| || | ||||| | | ||
Sbjct 837 GATGATTCAGACAACAGAGACCTGAATTCAGATGTAAGAATTGAGATTAATCGGGGTTTG 896
Query 1056 -AG-A---CG--G-TGATGGATCTGAAACAGAGACGAAAGAGAGAGTTAGGGTTTTGA-A 1106
|| | || | |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 897 GAGGAAATCGACGGTGATGGATCTGAAACAGAGAAGAAAGAGAAAGTTAGGGTTTTTAGA 956
Query 1107 GGAGTGTATGGATCCAAATGGAGGAGATTC-AGTAAACTCTCTCTCGCATACGAAAACCC 1165
| ||||||||||| |||||| || |||||| | ||| ||||||||||||| ||||||||
Sbjct 957 G-AGTGTATGGATTCAAATGAAGCAGATTCGATTAAT-TCTCTCTCGCATATGAAAACCC 1014
Query 1166 ATGTAGAAAGTGTAGATTTTCCGGGGAAATCATGCGAGAATCAGAGTGAGGAATTCACTA 1225
|| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 1015 ATAAAGAAAGTGTCGATTTTCCGGGAAAATCATGCGAGAATCAGAGTCAGGAATTCACCA 1074
Query 1226 GACATAACGGAGAAGATGAAGCAAGCTGCTCTGAGGAAAACGGTGGTGGCAG-CAACCAA 1284
||| ||||||||||| |||||||||||||||||||||||||||||| | | | |||||
Sbjct 1075 GACCCAACGGAGAAGACGAAGCAAGCTGCTCTGAGGAAAACGGTGGTCAC-GTCGACCAA 1133
Query 1285 TTACGGAGAAGTTGTGATTC--T-G-----G-TGAATTGAACGGCGAAACAACCGGAGAT 1335
|||||||||||||||||||| | | | ||||||||||||||||| ||||| |||
Sbjct 1134 TTACGGAGAAGTTGTGATTCCATTGATTCTGGTGAATTGAACGGCGAAAGAACCGAAGAA 1193
Query 1336 GA-AGGGAAAAGTCAGTCAGACATTTCGTCGAGTACGTTGAAGACAAATGGAAGCTCCTC 1394
| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1194 -ACAGAGAAAAGCCAGTCAGACATTTCATCGAGCACGTTGAAGACAAATGGAAGCTCCTC 1252
Query 1395 CTCTGTTTCATGTTTCAACAAAAACAAGAGTTCGGTTTTTCCGCTGTAGTAAAGCGTCTC 1454
||| || |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1253 CTCAGTATCATGTTTGTACAAAAACAAGAGTTCGATTTTTCCGCTGTAGTAAAAAGTCTC 1312
Query 1455 TACGAAAA 1462
||| ||||
Sbjct 1313 TACCAAAA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5