BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72230.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476354 jgi|Araly1|476354|fgenesh2_kg.2__1484__AT1G72230.1 1360 0.0
Ahg472488 jgi|Araly1|472488|fgenesh2_kg.1__2442__AT1G22480.1 267 1e-70
> Ahg476354 jgi|Araly1|476354|fgenesh2_kg.2__1484__AT1G72230.1
Length=938
Score = 1360 bits (736), Expect = 0.0
Identities = 856/912 (94%), Gaps = 16/912 (2%)
Strand=Plus/Plus
Query 2 TAGAGCAGAAGAGGAACAAGTCCTTATCTCC-AAATATGaaaaaaaGTTTTGAAAACTTA 60
||||||||| |||||||||||| ||||| || ||||||| ||||||||||| ||||||||
Sbjct 1 TAGAGCAGAGGAGGAACAAGTCTTTATC-CCTAAATATG-AAAAAAGTTTTCAAAACTTA 58
Query 61 AATG--ATGAGAGAGCTTTAGTTGGAGGGTAAGTGGACCTAACTCTACTAACTCCAACAT 118
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AATGATATGAGAGAGCTTTAGTTGGAGGGTAAGTGGACCTAACTCTACTAACTCCAACAT 118
Query 119 A-CC-CT--TTTGTTTCCAA--TCTCTATATATCTGCTCACAACTCACAAGGAATTCCCT 172
| || | ||||||||||| ||||||||||| || |||||||| |||||||||| |||
Sbjct 119 ATCCTTTAATTTGTTTCCAATCTCTCTATATATTTGATCACAACTTACAAGGAATTTCCT 178
Query 173 TAGTTACACAATTTTA--A-AATAAATATACCGTTACACAAAATACACAAAAATGGCAAA 229
| || ||||||||||| | |||||| |||| ||||||| || ||||||||||||||||
Sbjct 179 TTGTCACACAATTTTATTAGAATAAAGATACTGTTACACTCAACACACAAAAATGGCAAA 238
Query 230 CTTGTGTACACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCCTC 289
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 CTTGAGTACACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCTTC 298
Query 290 TTCTGCCAGTCACCCCGTCGAATGGTCGCTCGGGAAAGACTATAGCTCGTTGGCTACCGG 349
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 TTCTGCCAGTCACCCCGTCGAATGGTCGCTCGGGAAAGACTATAGCTCATTGGCTACCGG 358
Query 350 AAAGTCCTTCGCGGTCGGCGATACCATCGTGTTCAACTACGGTGCGGGTCACACGGTGGA 409
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 AAAGTCCTTCGCTGTTGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACACGGTGGA 418
Query 410 CGAAGTGAGCGAAAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGAAGTGAGCGAAAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAG 478
Query 470 TAGTGGAACCACAAGTATAGCTCTCAAGACACCTGGTCCTCACTACTTCATCTGCGGTAT 529
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 479 TAGTGGAACCACAAGTATAGCTCTCAAGACATCTGGTCCTCACTACTTCATCTGCAGTAT 538
Query 530 CCCCGGCCACTGCACTGGCGGGATGAAGCTCTCTGTCATTGTTCCAGCAGCTTCATCAGG 589
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 539 CCCCGGCCACTGCACCGGCGGCATGAAGCTCTCTGTCACCGTTCCAGCAGCTTCATCAGG 598
Query 590 CGGCAGTACTGGAGACGGTACCACTGACAAAAATACACCCGTACAAGACGGAAAAACTAC 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGGCAGTACTGGAGACGGTACCACTGACAAAAATACACCCGTACAAGACGGAAAAACTAC 658
Query 650 ACCCTCAGAAGGTAAAAAGGCTAGTCCTTCTGCTTCGGCCACGGCCGTGTTGAAGCCGTT 709
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 659 ACCCTCAGAAGGTAAAAAGGCTAGTCCTTCTGCTTCGGGCACGGCCGAGTTGAAGCCGTT 718
Query 710 GGATGCTTTGGTTGTGACTTGTGTAGTTGCATTGATGTACACTTTGGCTCTCCCTTAATT 769
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 719 GGATGCTTTGGTTGTGACTTGTGTAGTTGCATTGTTGTATGCTTTGGCTCTCTCTTAATT 778
Query 770 AGTTGGTTTCTTTTGTTTTCCTGTGGTTTGACTCGTTTGAAGGACCAGGCTAGAGGCAGT 829
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTTGGTTTCAAGTGTTTTGCTGTGGTTTGACTCGTTTGAAGGACCAGGCTAGAGGCAGT 838
Query 830 GCTGTTATATGCTTCTTATAATTAATTATCTCTCATGATTTTTCCTATGTTTTGTCTCGT 889
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCTATTATATGCTTCTTATTATTAATTATCTCTCATGATTTTTCCTATGTTTTGTCTCGT 898
Query 890 ATTTATCAAttt 901
|||| ||| |||
Sbjct 899 ATTT-TCA-TTT 908
> Ahg472488 jgi|Araly1|472488|fgenesh2_kg.1__2442__AT1G22480.1
Length=801
Score = 267 bits (144), Expect = 1e-70
Identities = 266/325 (82%), Gaps = 8/325 (2%)
Strand=Plus/Plus
Query 239 ACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCCTCTTCTGCCAG 298
|||| |||||| |||||| |||| |||||| | || | ||||||||||| || ||||
Sbjct 262 ACTTCTTGGTTGCCTTGTCCTCATATTCTTCTCTATGGTCGCACCTGCCTCATCCGCCAC 321
Query 299 TCACCCCGTCGAA-TGGTCGCTCGGGAAAGACTATAGCT-CGTTGGCTACCGGAAAGTCC 356
|| | || ||| ||||| || || | ||||| | || || | || || |||||||||
Sbjct 322 TCTTACGGT-GAACTGGTCCCTTGGCACCGACTACA-CTCCGCTCGCCACTGGAAAGTCC 379
Query 357 TTCGCGGTCGGCGATACCATCGTGTTCAACTACGGTGCGGGTCACACGGTGGACGAAGTG 416
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 380 TTCGCTGTCGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACACGGTGGACGAAGTG 439
Query 417 AGCGA-AAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAGTAGTGG 475
||||| || |||||||||||||||||| || |||||| | ||| | || ||||| || ||
Sbjct 440 AGCGAGAA-TGACTACAAGAGTTGCACTTTAGGGAACTCCATTACGTCCGACAGCAGCGG 498
Query 476 AACCACAAGTATAGCTCTCAAGAC-ACCTGGTCCTCACTACTTCATCTGCGGTATCCCCG 534
|||||| | |||||||||| ||| || |||||||| ||||||||| || || |||||||
Sbjct 499 AACCACGACCATAGCTCTCACGACCAC-TGGTCCTCGCTACTTCATATGTGGAATCCCCG 557
Query 535 GCCACTGCACTGGCGGGATGAAGCT 559
|||| ||| | | ||| ||||||||
Sbjct 558 GCCATTGCGCCGCCGGTATGAAGCT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5